Wall clock time and date at job start Mon Mar 30 2020 00:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00264 * 2 1 4 4 C 1.53009 * 109.47034 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46859 * 64.99710 * 4 3 2 6 6 C 1.36937 * 120.00174 * 264.42735 * 5 4 3 7 7 H 1.07995 * 119.99960 * 146.16535 * 6 5 4 8 8 C 1.38812 * 119.99601 * 326.16386 * 6 5 4 9 9 N 1.31622 * 120.00254 * 337.63308 * 8 6 5 10 10 Si 1.86800 * 119.99910 * 157.63461 * 8 6 5 11 11 H 1.48495 * 109.47236 * 89.99664 * 10 8 6 12 12 H 1.48503 * 109.47315 * 210.00224 * 10 8 6 13 13 H 1.48506 * 109.47113 * 329.99861 * 10 8 6 14 14 C 1.46506 * 119.99692 * 84.43147 * 5 4 3 15 15 C 1.50699 * 109.46835 * 89.99725 * 14 5 4 16 16 C 1.38237 * 120.00187 * 269.72050 * 15 14 5 17 17 C 1.38235 * 120.00072 * 179.76914 * 16 15 14 18 18 C 1.50696 * 119.99890 * 180.25349 * 17 16 15 19 19 C 1.38236 * 119.99871 * 0.48603 * 17 16 15 20 20 C 1.38231 * 119.99995 * 359.79246 * 19 17 16 21 21 C 1.50707 * 119.99804 * 179.97438 * 20 19 17 22 22 C 1.38234 * 119.99846 * 90.00051 * 15 14 5 23 23 H 1.09000 * 109.47412 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46771 * 300.00161 * 1 2 3 25 25 H 1.08998 * 109.47220 * 60.00186 * 1 2 3 26 26 H 1.08997 * 109.47603 * 59.99966 * 3 2 1 27 27 H 1.09006 * 109.46844 * 299.99777 * 3 2 1 28 28 H 1.09003 * 109.46603 * 184.99697 * 4 3 2 29 29 H 1.08994 * 109.47058 * 304.99691 * 4 3 2 30 30 H 0.96997 * 119.99891 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.46826 * 209.99479 * 14 5 4 32 32 H 1.08998 * 109.47346 * 329.99408 * 14 5 4 33 33 H 1.08002 * 119.99695 * 0.02562 * 16 15 14 34 34 H 1.08999 * 109.47037 * 270.23147 * 18 17 16 35 35 H 1.09001 * 109.47261 * 30.23479 * 18 17 16 36 36 H 1.09003 * 109.46876 * 150.23165 * 18 17 16 37 37 H 1.08002 * 120.00049 * 179.76406 * 19 17 16 38 38 H 1.09000 * 109.46617 * 269.97341 * 21 20 19 39 39 H 1.08997 * 109.47299 * 29.97511 * 21 20 19 40 40 H 1.09003 * 109.47086 * 149.97894 * 21 20 19 41 41 H 1.07998 * 120.00576 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5641 -1.2528 6 6 4.2065 -0.7846 -1.3045 7 1 3.9949 -1.3343 -2.2097 8 6 4.7127 -1.4452 -0.1935 9 7 5.3732 -0.7746 0.7266 10 14 4.4565 -3.2858 -0.0043 11 1 5.5856 -4.0108 -0.6405 12 1 4.3966 -3.6315 1.4387 13 1 3.1836 -3.6785 -0.6605 14 6 4.1688 1.3869 -2.4495 15 6 5.5899 1.8867 -2.4914 16 6 5.9163 3.0922 -1.8987 17 6 7.2208 3.5483 -1.9330 18 6 7.5778 4.8597 -1.2819 19 6 8.1969 2.8039 -2.5687 20 6 7.8693 1.6013 -3.1663 21 6 8.9333 0.7900 -3.8598 22 6 6.5658 1.1425 -3.1275 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6887 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.9786 2.1764 0.0889 29 1 3.8515 0.5681 0.8409 30 1 5.7272 -1.2363 1.5027 31 1 3.9678 0.7885 -3.3381 32 1 3.4857 2.2358 -2.4210 33 1 5.1530 3.6755 -1.4053 34 1 7.4651 5.6671 -2.0055 35 1 6.9159 5.0365 -0.4341 36 1 8.6106 4.8239 -0.9353 37 1 9.2153 3.1621 -2.5988 38 1 8.9905 1.0858 -4.9073 39 1 9.8956 0.9664 -3.3793 40 1 8.6832 -0.2689 -3.7944 41 1 6.3100 0.2027 -3.5941 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317159513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:24 Heat of formation + Delta-G solvation = -26.988183 kcal Electronic energy + Delta-G solvation = -20352.154900 eV Core-core repulsion = 17424.736977 eV Total energy + Delta-G solvation = -2927.417924 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33587 -38.78580 -37.09430 -34.23977 -34.02079 -32.54698 -30.33422 -28.27348 -27.44842 -27.18714 -27.02817 -24.83968 -22.60390 -21.44437 -20.98905 -18.64833 -17.31476 -17.05206 -16.74943 -16.49761 -16.35227 -15.62245 -15.44315 -15.24319 -14.98952 -14.61846 -13.99064 -13.93061 -13.69716 -13.45520 -13.31234 -13.27834 -12.90608 -12.76091 -12.65434 -12.45673 -12.32441 -12.26810 -11.96510 -11.92064 -11.63664 -11.60834 -11.51283 -10.44919 -10.34359 -9.32132 -9.23507 -8.53125 -7.76229 -5.27569 0.66867 0.69789 1.44222 1.47934 1.57748 2.56578 2.98915 3.20505 3.37682 3.84636 4.04029 4.05567 4.18755 4.39406 4.41305 4.54274 4.56515 4.61139 4.61638 4.65176 4.73466 4.80800 4.81064 4.86651 4.87024 4.88968 4.91558 4.99492 5.08982 5.12254 5.13316 5.46698 5.51171 5.71332 5.79013 5.82901 5.86204 6.03277 6.38479 6.46380 6.66031 7.23476 7.92742 8.42178 9.22615 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.007044 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.819645 B = 3974.277964 C = 4942.117760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.055 3.945 4 C 0.143 3.857 5 N -0.577 5.577 6 C -0.234 4.234 7 H 0.049 0.951 8 C -0.030 4.030 9 N -0.915 5.915 10 Si 0.946 3.054 11 H -0.288 1.288 12 H -0.295 1.295 13 H -0.277 1.277 14 C 0.177 3.823 15 C -0.085 4.085 16 C -0.137 4.137 17 C -0.095 4.095 18 C -0.104 4.104 19 C -0.146 4.146 20 C -0.097 4.097 21 C -0.105 4.105 22 C -0.130 4.130 23 H 0.082 0.918 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.246 0.754 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 9.334 -5.124 10.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.023 4.023 4 C 0.017 3.983 5 N -0.296 5.296 6 C -0.365 4.365 7 H 0.066 0.934 8 C -0.227 4.227 9 N -0.560 5.560 10 Si 0.776 3.224 11 H -0.215 1.215 12 H -0.221 1.221 13 H -0.202 1.202 14 C 0.051 3.949 15 C -0.088 4.088 16 C -0.155 4.155 17 C -0.095 4.095 18 C -0.160 4.160 19 C -0.164 4.164 20 C -0.097 4.097 21 C -0.162 4.162 22 C -0.149 4.149 23 H 0.101 0.899 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.155 0.845 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.299 9.095 -4.980 10.373 hybrid contribution -0.388 -1.084 0.434 1.231 sum -0.089 8.010 -4.546 9.211 Atomic orbital electron populations 1.22828 0.81431 1.02685 1.00115 1.88120 1.19765 1.28795 1.95208 1.23216 0.96555 0.83995 0.98568 1.20933 0.89566 0.96297 0.91509 1.43932 1.75106 1.03549 1.06972 1.18988 1.34538 0.83945 0.99026 0.93377 1.25499 0.97347 1.00467 0.99340 1.70110 1.37143 1.36126 1.12670 0.85614 0.77774 0.82654 0.76382 1.21520 1.22097 1.20222 1.20064 0.90247 0.93993 0.90565 1.20969 0.98871 0.93690 0.95246 1.20931 0.96579 0.96536 1.01503 1.20201 0.93115 0.97986 0.98232 1.20750 1.02302 0.92869 1.00114 1.21006 0.99605 0.95098 1.00666 1.20190 0.94678 0.96050 0.98830 1.20751 0.96457 0.98494 1.00487 1.20878 0.93386 0.99074 1.01535 0.89907 0.93455 0.93794 0.93295 0.94082 0.93776 0.91058 0.94486 0.93477 0.92039 0.86586 0.89813 0.91780 0.90789 0.84535 0.89785 0.90573 0.92641 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -17.43 10.44 -148.98 -1.56 -18.98 16 3 C 0.06 2.19 6.28 71.99 0.45 2.64 16 4 C 0.14 6.79 5.63 86.38 0.49 7.28 16 5 N -0.58 -28.75 2.39 -706.32 -1.69 -30.44 16 6 C -0.23 -13.09 9.28 84.03 0.78 -12.31 16 7 H 0.05 2.73 7.92 -2.91 -0.02 2.71 16 8 C -0.03 -1.72 4.91 84.86 0.42 -1.30 16 9 N -0.92 -54.83 11.34 21.65 0.25 -54.58 16 10 Si 0.95 47.09 29.61 68.60 2.03 49.12 16 11 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 13 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 14 C 0.18 7.54 5.82 85.63 0.50 8.04 16 15 C -0.08 -3.54 5.46 -19.87 -0.11 -3.65 16 16 C -0.14 -5.13 9.36 22.27 0.21 -4.92 16 17 C -0.10 -3.15 5.88 -19.87 -0.12 -3.26 16 18 C -0.10 -2.51 10.01 71.23 0.71 -1.80 16 19 C -0.15 -4.74 9.36 22.27 0.21 -4.53 16 20 C -0.10 -3.46 5.88 -19.86 -0.12 -3.58 16 21 C -0.11 -2.94 10.01 71.24 0.71 -2.22 16 22 C -0.13 -5.36 9.36 22.27 0.21 -5.16 16 23 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.04 1.50 8.11 -2.38 -0.02 1.48 16 28 H 0.04 1.97 8.11 -2.39 -0.02 1.95 16 29 H 0.07 3.99 5.34 -2.39 -0.01 3.98 16 30 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.05 2.00 7.98 -2.39 -0.02 1.99 16 32 H 0.06 2.32 7.99 -2.39 -0.02 2.30 16 33 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.53 8.09 -2.39 -0.02 1.51 16 36 H 0.07 1.58 8.09 -2.39 -0.02 1.56 16 37 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 40 H 0.05 1.63 8.09 -2.39 -0.02 1.61 16 41 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -66.93 342.50 5.60 -61.34 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.97 Total: 16.26 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 5.59 Total: -22.71 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -1.44 Total: -85.02 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.56 Total: -18.98 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -66.93 5.60 -61.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317159513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.349 kcal (2) G-P(sol) polarization free energy of solvation -66.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds