Wall clock time and date at job start Mon Mar 30 2020 00:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99893 * 2 1 4 4 H 1.48494 * 109.47116 * 264.77678 * 3 2 1 5 5 H 1.48497 * 109.46761 * 24.77682 * 3 2 1 6 6 H 1.48498 * 109.46765 * 144.77617 * 3 2 1 7 7 C 1.37882 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99593 * 6.16062 * 7 2 1 9 9 C 1.50699 * 120.00123 * 186.16461 * 7 2 1 10 10 C 1.53039 * 109.45759 * 215.08458 * 9 7 2 11 11 C 1.53193 * 109.30969 * 178.61335 * 10 9 7 12 12 N 1.46931 * 108.77468 * 54.63412 * 11 10 9 13 13 C 1.34780 * 120.62535 * 126.36592 * 12 11 10 14 14 O 1.21276 * 120.00219 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99475 * 179.97438 * 13 12 11 16 16 H 1.08996 * 115.51925 * 325.48590 * 15 13 12 17 17 C 1.55329 * 117.16156 * 111.55937 * 15 13 12 18 18 H 1.08999 * 119.85650 * 356.67847 * 17 15 13 19 19 C 1.54272 * 118.38828 * 200.67890 * 17 15 13 20 20 C 1.54885 * 104.31371 * 273.02303 * 19 17 15 21 21 C 1.54894 * 102.75145 * 37.87305 * 20 19 17 22 22 C 1.53000 * 117.45975 * 179.97438 * 15 13 12 23 23 H 1.09001 * 119.29552 * 4.64920 * 22 15 13 24 24 C 1.46914 * 118.73927 * 306.64314 * 12 11 10 25 25 C 1.52761 * 109.01038 * 53.31048 * 24 12 11 26 26 H 0.97000 * 120.00002 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.44528 * 335.05151 * 9 7 2 28 28 H 1.08996 * 109.49999 * 58.66380 * 10 9 7 29 29 H 1.09000 * 109.49858 * 298.56735 * 10 9 7 30 30 H 1.09005 * 109.58739 * 294.84844 * 11 10 9 31 31 H 1.08996 * 109.58546 * 174.42167 * 11 10 9 32 32 H 1.09000 * 110.48674 * 154.27663 * 19 17 15 33 33 H 1.09001 * 110.48164 * 31.76322 * 19 17 15 34 34 H 1.08997 * 110.75716 * 156.18468 * 20 19 17 35 35 H 1.09002 * 110.75839 * 279.56064 * 20 19 17 36 36 H 1.08997 * 110.48331 * 80.73481 * 21 20 19 37 37 H 1.08992 * 110.48943 * 203.37919 * 21 20 19 38 38 H 1.09002 * 109.59019 * 173.14258 * 24 12 11 39 39 H 1.09004 * 109.59052 * 293.57013 * 24 12 11 40 40 H 1.09004 * 109.56636 * 185.55425 * 25 24 12 41 41 H 1.08997 * 109.36051 * 65.49831 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6070 1.9828 -1.3942 5 1 1.3957 2.6820 0.5867 6 1 3.4871 1.4746 0.8075 7 6 2.0046 -1.1941 -0.0005 8 1 1.4693 -2.1266 -0.1013 9 6 3.5051 -1.1979 0.1396 10 6 4.0928 -2.3333 -0.7015 11 6 5.6200 -2.3126 -0.5841 12 7 5.9857 -2.3634 0.8381 13 6 6.8381 -3.3022 1.2947 14 8 7.3115 -4.1153 0.5294 15 6 7.2039 -3.3409 2.7561 16 1 7.2687 -2.3713 3.2498 17 6 6.6861 -4.5482 3.5850 18 1 6.0407 -5.2912 3.1165 19 6 6.6065 -4.4046 5.1190 20 6 8.0157 -4.8128 5.6154 21 6 8.9465 -4.2160 4.5307 22 6 8.1759 -4.4312 3.2116 23 1 8.6276 -5.0876 2.4678 24 6 5.3998 -1.3752 1.7538 25 6 3.8793 -1.4030 1.6093 26 1 -0.4850 0.8400 0.0004 27 1 3.9043 -0.2447 -0.2072 28 1 3.8062 -2.1993 -1.7446 29 1 3.7129 -3.2886 -0.3393 30 1 6.0083 -1.3962 -1.0287 31 1 6.0379 -3.1770 -1.1000 32 1 5.8495 -5.0749 5.5261 33 1 6.3890 -3.3727 5.3947 34 1 8.2250 -4.3711 6.5896 35 1 8.1126 -5.8979 5.6531 36 1 9.1078 -3.1529 4.7095 37 1 9.8971 -4.7486 4.5086 38 1 5.6724 -1.6213 2.7801 39 1 5.7697 -0.3808 1.5038 40 1 3.4408 -0.6068 2.2109 41 1 3.5016 -2.3670 1.9498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334222055.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:54 Heat of formation + Delta-G solvation = -25.334923 kcal Electronic energy + Delta-G solvation = -20310.335948 eV Core-core repulsion = 17382.989715 eV Total energy + Delta-G solvation = -2927.346233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40515 -38.69086 -36.85230 -33.47853 -32.04360 -31.36263 -30.45022 -28.39483 -26.72054 -24.42796 -22.65905 -22.21501 -20.82386 -19.87774 -19.58320 -18.43258 -17.19390 -16.86760 -16.04497 -15.14887 -14.86477 -14.62978 -14.32654 -13.57250 -13.43347 -13.33826 -13.04227 -12.87614 -12.62405 -12.47567 -11.97740 -11.72753 -11.60210 -11.42860 -11.31142 -11.03656 -11.00438 -10.81671 -10.54763 -10.13210 -10.03803 -9.85931 -9.72958 -9.49110 -9.31627 -9.14794 -8.55382 -8.17113 -6.11538 -4.10603 2.60273 3.20977 3.24399 3.32833 3.33676 3.68725 4.31119 4.37530 4.55789 4.59222 4.91364 5.02518 5.06484 5.15795 5.25678 5.29903 5.37624 5.45838 5.54336 5.62313 5.66930 5.69808 5.81033 5.84723 5.89320 5.95768 5.96998 6.03519 6.15906 6.22544 6.28836 6.31377 6.66583 6.73088 6.80742 6.93240 7.27282 7.41206 7.70916 7.76525 8.43508 8.49208 8.94342 9.51622 11.01968 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.004867 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.428062 B = 5752.173250 C = 6131.356998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.072 0.928 9 C 0.015 3.985 10 C -0.117 4.117 11 C 0.107 3.893 12 N -0.597 5.597 13 C 0.542 3.458 14 O -0.555 6.555 15 C -0.161 4.161 16 H 0.121 0.879 17 C -0.136 4.136 18 H 0.115 0.885 19 C -0.097 4.097 20 C -0.123 4.123 21 C -0.097 4.097 22 C -0.133 4.133 23 H 0.119 0.881 24 C 0.101 3.899 25 C -0.124 4.124 26 H 0.264 0.736 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.677 -5.067 9.809 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.090 0.910 9 C -0.004 4.004 10 C -0.155 4.155 11 C -0.015 4.015 12 N -0.329 5.329 13 C 0.331 3.669 14 O -0.434 6.434 15 C -0.181 4.181 16 H 0.138 0.862 17 C -0.154 4.154 18 H 0.133 0.867 19 C -0.134 4.134 20 C -0.160 4.160 21 C -0.134 4.134 22 C -0.152 4.152 23 H 0.137 0.863 24 C -0.021 4.021 25 C -0.163 4.163 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.740 -5.363 9.396 19.100 hybrid contribution 0.158 1.132 -0.078 1.145 sum 15.899 -4.231 9.317 18.907 Atomic orbital electron populations 1.69916 1.06357 1.26972 1.50571 1.25081 0.94660 0.98956 0.94403 0.86859 0.80104 0.83734 0.78780 1.20229 1.21668 1.19007 1.20985 0.89259 0.94583 1.50124 0.91013 1.19129 0.96824 0.94004 0.90480 1.21958 0.91531 1.00723 1.01324 1.21807 0.97479 1.01852 0.80336 1.48059 1.43949 1.31021 1.09826 1.19528 0.78473 0.80399 0.88540 1.90637 1.54587 1.40073 1.58096 1.22729 1.05997 0.96011 0.93411 0.86166 1.23606 0.98471 0.98773 0.94570 0.86689 1.21997 0.97321 1.02003 0.92088 1.22695 0.94234 1.00958 0.98140 1.22010 0.98074 1.01127 0.92227 1.23278 0.91973 1.00876 0.99029 0.86303 1.21918 0.96452 0.91131 0.92630 1.22137 0.91002 1.01935 1.01237 0.92656 0.95043 0.91283 0.92534 0.92133 0.89969 0.90799 0.91074 0.91238 0.91203 0.91311 0.91012 0.90656 0.92099 0.91607 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.96 55.43 0.77 -26.16 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.76 27.02 -169.99 -4.59 16.16 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -5.86 6.77 56.52 0.38 -5.48 16 7 C -0.51 -13.83 8.85 -34.44 -0.30 -14.13 16 8 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 9 C 0.01 0.33 1.75 -91.73 -0.16 0.16 16 10 C -0.12 -2.32 5.34 -26.61 -0.14 -2.46 16 11 C 0.11 1.89 6.43 -3.71 -0.02 1.86 16 12 N -0.60 -10.16 2.98 -173.03 -0.52 -10.68 16 13 C 0.54 9.14 7.48 -10.98 -0.08 9.06 16 14 O -0.55 -10.93 15.74 5.56 0.09 -10.85 16 15 C -0.16 -2.11 4.62 -90.54 -0.42 -2.53 16 16 H 0.12 1.39 6.84 -51.93 -0.36 1.03 16 17 C -0.14 -1.60 6.75 -88.18 -0.60 -2.20 16 18 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 19 C -0.10 -0.90 6.64 -25.07 -0.17 -1.06 16 20 C -0.12 -0.98 6.91 -24.74 -0.17 -1.15 16 21 C -0.10 -0.86 6.62 -25.06 -0.17 -1.02 16 22 C -0.13 -1.56 6.31 -89.41 -0.56 -2.12 16 23 H 0.12 1.55 7.79 -51.93 -0.40 1.15 16 24 C 0.10 1.61 6.27 -3.94 -0.02 1.59 16 25 C -0.12 -2.42 5.33 -26.83 -0.14 -2.57 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.03 0.70 5.24 -51.93 -0.27 0.43 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.46 7.00 -51.93 -0.36 1.09 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.00 5.69 -51.93 -0.30 0.71 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -30.68 320.22 -9.24 -39.92 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.76 Total: 1.47 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -3.06 Total: -14.69 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.26 Total: -36.84 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.59 Total: 16.16 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.68 -9.24 -39.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334222055.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.586 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds