Wall clock time and date at job start Mon Mar 30 2020 00:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99893 * 2 1 4 4 H 1.48494 * 109.47116 * 264.77678 * 3 2 1 5 5 H 1.48497 * 109.46761 * 24.77682 * 3 2 1 6 6 H 1.48498 * 109.46765 * 144.77617 * 3 2 1 7 7 C 1.37882 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99593 * 6.16062 * 7 2 1 9 9 C 1.50699 * 120.00123 * 186.16461 * 7 2 1 10 10 C 1.53039 * 109.45759 * 215.08458 * 9 7 2 11 11 C 1.53193 * 109.30969 * 178.61335 * 10 9 7 12 12 N 1.46931 * 108.77468 * 54.63412 * 11 10 9 13 13 C 1.34780 * 120.62535 * 126.36592 * 12 11 10 14 14 O 1.21276 * 120.00219 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99475 * 179.97438 * 13 12 11 16 16 H 1.08996 * 115.51925 * 325.48590 * 15 13 12 17 17 C 1.55329 * 117.16156 * 111.55937 * 15 13 12 18 18 H 1.08999 * 119.85650 * 356.67847 * 17 15 13 19 19 C 1.54272 * 118.38828 * 200.67890 * 17 15 13 20 20 C 1.54885 * 104.31371 * 273.02303 * 19 17 15 21 21 C 1.54894 * 102.75145 * 37.87305 * 20 19 17 22 22 C 1.53000 * 117.45975 * 179.97438 * 15 13 12 23 23 H 1.09001 * 119.29552 * 4.64920 * 22 15 13 24 24 C 1.46914 * 118.73927 * 306.64314 * 12 11 10 25 25 C 1.52761 * 109.01038 * 53.31048 * 24 12 11 26 26 H 0.97000 * 120.00002 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.44528 * 335.05151 * 9 7 2 28 28 H 1.08996 * 109.49999 * 58.66380 * 10 9 7 29 29 H 1.09000 * 109.49858 * 298.56735 * 10 9 7 30 30 H 1.09005 * 109.58739 * 294.84844 * 11 10 9 31 31 H 1.08996 * 109.58546 * 174.42167 * 11 10 9 32 32 H 1.09000 * 110.48674 * 154.27663 * 19 17 15 33 33 H 1.09001 * 110.48164 * 31.76322 * 19 17 15 34 34 H 1.08997 * 110.75716 * 156.18468 * 20 19 17 35 35 H 1.09002 * 110.75839 * 279.56064 * 20 19 17 36 36 H 1.08997 * 110.48331 * 80.73481 * 21 20 19 37 37 H 1.08992 * 110.48943 * 203.37919 * 21 20 19 38 38 H 1.09002 * 109.59019 * 173.14258 * 24 12 11 39 39 H 1.09004 * 109.59052 * 293.57013 * 24 12 11 40 40 H 1.09004 * 109.56636 * 185.55425 * 25 24 12 41 41 H 1.08997 * 109.36051 * 65.49831 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6070 1.9828 -1.3942 5 1 1.3957 2.6820 0.5867 6 1 3.4871 1.4746 0.8075 7 6 2.0046 -1.1941 -0.0005 8 1 1.4693 -2.1266 -0.1013 9 6 3.5051 -1.1979 0.1396 10 6 4.0928 -2.3333 -0.7015 11 6 5.6200 -2.3126 -0.5841 12 7 5.9857 -2.3634 0.8381 13 6 6.8381 -3.3022 1.2947 14 8 7.3115 -4.1153 0.5294 15 6 7.2039 -3.3409 2.7561 16 1 7.2687 -2.3713 3.2498 17 6 6.6861 -4.5482 3.5850 18 1 6.0407 -5.2912 3.1165 19 6 6.6065 -4.4046 5.1190 20 6 8.0157 -4.8128 5.6154 21 6 8.9465 -4.2160 4.5307 22 6 8.1759 -4.4312 3.2116 23 1 8.6276 -5.0876 2.4678 24 6 5.3998 -1.3752 1.7538 25 6 3.8793 -1.4030 1.6093 26 1 -0.4850 0.8400 0.0004 27 1 3.9043 -0.2447 -0.2072 28 1 3.8062 -2.1993 -1.7446 29 1 3.7129 -3.2886 -0.3393 30 1 6.0083 -1.3962 -1.0287 31 1 6.0379 -3.1770 -1.1000 32 1 5.8495 -5.0749 5.5261 33 1 6.3890 -3.3727 5.3947 34 1 8.2250 -4.3711 6.5896 35 1 8.1126 -5.8979 5.6531 36 1 9.1078 -3.1529 4.7095 37 1 9.8971 -4.7486 4.5086 38 1 5.6724 -1.6213 2.7801 39 1 5.7697 -0.3808 1.5038 40 1 3.4408 -0.6068 2.2109 41 1 3.5016 -2.3670 1.9498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334222055.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:54 Heat of formation + Delta-G solvation = -42.563747 kcal Electronic energy + Delta-G solvation = -20311.083046 eV Core-core repulsion = 17382.989715 eV Total energy + Delta-G solvation = -2928.093331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.57362 -39.80162 -38.31151 -35.27652 -33.52820 -32.70223 -31.81766 -29.11865 -28.44705 -25.77402 -24.21792 -23.58780 -21.70666 -21.15355 -20.58126 -19.79677 -18.99269 -18.38326 -17.26767 -16.38771 -16.15050 -15.92561 -15.68427 -15.05239 -14.81904 -14.68321 -14.29264 -14.22514 -13.97544 -13.73655 -13.62639 -13.17637 -12.83290 -12.57644 -12.41379 -12.25577 -12.08925 -11.95772 -11.83402 -11.66536 -11.50917 -11.24168 -11.08295 -11.04209 -10.82238 -10.62996 -10.58060 -9.60599 -8.26703 -6.31285 1.37600 1.39338 1.40136 1.51283 1.96094 2.38039 2.69795 3.08569 3.32936 3.69612 3.74777 3.87215 4.07711 4.13630 4.20895 4.26593 4.27397 4.31510 4.49365 4.50520 4.54700 4.60797 4.70788 4.78537 4.82655 4.84010 4.94488 4.99464 5.12737 5.16432 5.18950 5.23904 5.24343 5.30201 5.43851 5.52217 5.57110 5.68906 5.76939 6.33780 6.43473 6.75860 7.11983 7.34740 8.90725 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.004867 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.428062 B = 5752.173250 C = 6131.356998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.231 1.231 7 C -0.517 4.517 8 H 0.021 0.979 9 C 0.013 3.987 10 C -0.111 4.111 11 C 0.114 3.886 12 N -0.602 5.602 13 C 0.537 3.463 14 O -0.591 6.591 15 C -0.168 4.168 16 H 0.146 0.854 17 C -0.139 4.139 18 H 0.095 0.905 19 C -0.093 4.093 20 C -0.117 4.117 21 C -0.091 4.091 22 C -0.131 4.131 23 H 0.098 0.902 24 C 0.108 3.892 25 C -0.121 4.121 26 H 0.265 0.735 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.587 -3.476 11.890 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.154 1.154 7 C -0.555 4.555 8 H 0.040 0.960 9 C -0.006 4.006 10 C -0.149 4.149 11 C -0.009 4.009 12 N -0.333 5.333 13 C 0.327 3.673 14 O -0.473 6.473 15 C -0.188 4.188 16 H 0.163 0.837 17 C -0.158 4.158 18 H 0.113 0.887 19 C -0.131 4.131 20 C -0.154 4.154 21 C -0.129 4.129 22 C -0.150 4.150 23 H 0.116 0.884 24 C -0.013 4.013 25 C -0.159 4.159 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.673 -3.786 11.492 22.250 hybrid contribution -0.847 0.480 -0.791 1.254 sum 17.826 -3.306 10.700 21.052 Atomic orbital electron populations 1.70086 1.08577 1.28102 1.52652 1.26018 0.95408 1.03257 0.93990 0.85767 0.79762 0.78065 0.79540 1.19556 1.21792 1.15422 1.21258 0.92041 0.92730 1.49494 0.96022 1.19128 0.93411 0.95108 0.92932 1.21819 0.93549 0.98909 1.00650 1.21661 0.95132 1.02672 0.81406 1.48166 1.44035 1.31450 1.09617 1.20204 0.77733 0.79373 0.89994 1.90617 1.55913 1.41266 1.59458 1.22760 1.07361 0.97675 0.91042 0.83675 1.23703 0.98399 0.97477 0.96191 0.88723 1.22048 0.98510 1.02845 0.89672 1.22694 0.92832 1.01222 0.98691 1.22049 0.98247 1.02171 0.90399 1.23355 0.92262 0.99588 0.99786 0.88392 1.21945 0.93232 0.91878 0.94290 1.21965 0.94110 1.01114 0.98732 0.92628 0.94169 0.91637 0.94527 0.90122 0.90452 0.90341 0.90063 0.89157 0.91073 0.90113 0.89991 0.87360 0.90134 0.91633 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 2 C 0.01 0.55 5.47 84.66 0.46 1.02 16 3 Si 0.95 41.90 27.02 68.60 1.85 43.76 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.23 -8.93 6.77 99.48 0.67 -8.26 16 7 C -0.52 -28.80 8.85 25.60 0.23 -28.57 16 8 H 0.02 1.37 8.06 -2.91 -0.02 1.35 16 9 C 0.01 0.57 1.75 -11.51 -0.02 0.55 16 10 C -0.11 -4.42 5.34 30.67 0.16 -4.26 16 11 C 0.11 3.85 6.43 86.36 0.56 4.41 16 12 N -0.60 -19.26 2.98 -819.74 -2.44 -21.70 16 13 C 0.54 17.37 7.48 87.66 0.66 18.02 16 14 O -0.59 -23.23 15.74 -3.02 -0.05 -23.28 16 15 C -0.17 -4.00 4.62 -10.74 -0.05 -4.05 16 16 H 0.15 2.70 6.84 -2.39 -0.02 2.69 16 17 C -0.14 -3.06 6.75 -9.21 -0.06 -3.12 16 18 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 19 C -0.09 -1.44 6.64 31.67 0.21 -1.23 16 20 C -0.12 -1.43 6.91 31.89 0.22 -1.21 16 21 C -0.09 -1.30 6.62 31.68 0.21 -1.09 16 22 C -0.13 -2.83 6.31 -10.01 -0.06 -2.89 16 23 H 0.10 2.53 7.79 -2.39 -0.02 2.51 16 24 C 0.11 3.07 6.27 86.22 0.54 3.61 16 25 C -0.12 -4.49 5.33 30.53 0.16 -4.33 16 26 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.04 1.69 5.24 -2.39 -0.01 1.68 16 28 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 30 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.08 2.72 7.00 -2.39 -0.02 2.70 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 38 H 0.11 2.40 5.69 -2.39 -0.01 2.38 16 39 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -69.52 320.22 3.84 -65.68 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.96 Total: 17.35 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.21 Total: -23.14 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.14 Total: -80.36 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.05 Total: -23.28 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.85 Total: 43.76 kcal Total: -69.52 3.84 -65.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334222055.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.113 kcal (2) G-P(sol) polarization free energy of solvation -69.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds