Wall clock time and date at job start Mon Mar 30 2020 00:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99868 * 2 1 4 4 H 1.48497 * 109.47016 * 269.99643 * 3 2 1 5 5 H 1.48497 * 109.46744 * 29.99987 * 3 2 1 6 6 H 1.48504 * 109.47016 * 150.00047 * 3 2 1 7 7 C 1.37877 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99567 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00245 * 180.02562 * 7 2 1 10 10 C 1.53045 * 109.46018 * 179.97438 * 9 7 2 11 11 C 1.53187 * 109.31323 * 181.38223 * 10 9 7 12 12 N 1.46927 * 108.77856 * 305.36837 * 11 10 9 13 13 C 1.34774 * 120.63299 * 233.58366 * 12 11 10 14 14 O 1.21284 * 119.99810 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00159 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47320 * 180.02562 * 15 13 12 17 17 H 1.09005 * 110.34587 * 307.29545 * 16 15 13 18 18 C 1.51100 * 110.48430 * 69.63892 * 16 15 13 19 19 C 1.30724 * 111.14096 * 135.39640 * 18 16 15 20 20 C 1.51106 * 110.98690 * 359.84700 * 19 18 16 21 21 C 1.54630 * 110.39024 * 185.00318 * 16 15 13 22 22 C 1.46927 * 118.73716 * 53.85848 * 12 11 10 23 23 C 1.53039 * 109.45964 * 300.06490 * 9 7 2 24 24 H 0.96996 * 120.00306 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.44657 * 60.03312 * 9 7 2 26 26 H 1.08999 * 109.49469 * 61.43009 * 10 9 7 27 27 H 1.09002 * 109.52251 * 301.35372 * 10 9 7 28 28 H 1.08997 * 109.58624 * 185.57890 * 11 10 9 29 29 H 1.09004 * 109.58437 * 65.15275 * 11 10 9 30 30 H 1.08998 * 109.46960 * 60.00682 * 15 13 12 31 31 H 1.08994 * 109.47434 * 300.00383 * 15 13 12 32 32 H 1.08004 * 124.45196 * 315.31945 * 18 16 15 33 33 H 1.08003 * 124.56566 * 179.97438 * 19 18 16 34 34 H 1.09002 * 110.38747 * 224.83749 * 20 19 18 35 35 H 1.09000 * 110.38500 * 102.57217 * 20 19 18 36 36 H 1.09003 * 111.03946 * 98.41034 * 21 16 15 37 37 H 1.09001 * 111.07005 * 334.48878 * 21 16 15 38 38 H 1.09003 * 109.58658 * 65.92814 * 22 12 11 39 39 H 1.08995 * 109.58437 * 186.35514 * 22 12 11 40 40 H 1.08998 * 109.49516 * 298.56405 * 23 9 7 41 41 H 1.08994 * 109.49602 * 58.63238 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6370 -0.0001 11 6 5.5529 -2.6332 0.0354 12 7 6.0499 -1.8175 -1.0810 13 6 6.9444 -2.3208 -1.9544 14 8 7.3466 -3.4575 -1.8231 15 6 7.4441 -1.4718 -3.0947 16 6 8.4422 -2.2760 -3.9302 17 1 9.2228 -2.6909 -3.2924 18 6 7.7346 -3.3797 -4.6814 19 6 8.1445 -3.4442 -5.9210 20 6 9.1909 -2.3905 -6.2006 21 6 9.0630 -1.3861 -5.0318 22 6 5.5576 -0.4405 -1.2237 23 6 4.0219 -0.4702 -1.2481 24 1 -0.4850 0.8400 -0.0004 25 1 3.8741 -0.6812 0.8910 26 1 3.6797 -3.1435 -0.9027 27 1 3.6385 -3.1587 0.8770 28 1 5.9233 -3.6534 -0.0643 29 1 5.8955 -2.2084 0.9790 30 1 7.9349 -0.5831 -2.6980 31 1 6.6036 -1.1736 -3.7212 32 1 6.9887 -4.0312 -4.2505 33 1 7.7825 -4.1542 -6.6499 34 1 8.9874 -1.8959 -7.1503 35 1 10.1854 -2.8364 -6.2109 36 1 10.0410 -1.0125 -4.7282 37 1 8.3966 -0.5641 -5.2934 38 1 5.9006 0.1594 -0.3807 39 1 5.9310 -0.0136 -2.1545 40 1 3.6802 -0.9968 -2.1392 41 1 3.6388 0.5501 -1.2591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334250363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:34 Heat of formation + Delta-G solvation = -28.099257 kcal Electronic energy + Delta-G solvation = -20268.325245 eV Core-core repulsion = 17340.859142 eV Total energy + Delta-G solvation = -2927.466103 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12711 -38.53320 -36.91888 -33.56708 -32.08207 -31.23293 -30.35978 -28.98522 -26.75875 -25.29171 -22.70579 -22.63716 -20.69608 -19.97917 -18.80091 -18.31313 -17.01622 -16.65253 -16.03193 -15.69010 -15.08804 -14.91475 -14.58110 -13.63105 -13.57160 -13.14952 -13.05862 -12.60625 -12.37469 -12.09992 -12.08203 -11.96285 -11.90506 -11.76939 -11.34813 -11.18693 -11.03747 -10.82336 -10.73924 -10.20895 -10.17076 -9.78227 -9.47556 -9.31745 -9.10722 -8.91722 -8.59685 -8.17993 -6.12081 -4.11530 2.27644 2.88122 3.18268 3.28795 3.29482 3.36078 4.34213 4.45783 4.53098 4.74983 4.87634 5.13098 5.15263 5.25349 5.34463 5.41906 5.46513 5.55770 5.60240 5.64397 5.68170 5.77272 5.80179 5.84574 5.87324 5.97889 6.09263 6.17792 6.19655 6.28589 6.54817 6.61612 6.62810 6.74646 6.87815 6.90408 7.16245 7.45585 7.69452 7.75491 8.44370 8.47608 8.92366 9.49713 11.01383 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.004768 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.553147 B = 5871.125485 C = 6206.508667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.113 4.113 11 C 0.108 3.892 12 N -0.603 5.603 13 C 0.512 3.488 14 O -0.552 6.552 15 C -0.133 4.133 16 C -0.053 4.053 17 H 0.089 0.911 18 C -0.136 4.136 19 C -0.188 4.188 20 C -0.097 4.097 21 C -0.123 4.123 22 C 0.101 3.899 23 C -0.135 4.135 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.310 -0.415 -8.434 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.091 0.909 9 C -0.004 4.004 10 C -0.151 4.151 11 C -0.014 4.014 12 N -0.336 5.336 13 C 0.301 3.699 14 O -0.430 6.430 15 C -0.173 4.173 16 C -0.072 4.072 17 H 0.107 0.893 18 C -0.154 4.154 19 C -0.205 4.205 20 C -0.135 4.135 21 C -0.161 4.161 22 C -0.022 4.022 23 C -0.173 4.173 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.352 -0.895 -8.346 19.276 hybrid contribution 0.090 1.056 -0.013 1.060 sum 17.442 0.161 -8.359 19.342 Atomic orbital electron populations 1.69897 1.06317 1.26949 1.50721 1.25050 0.94697 0.99054 0.94527 0.86865 0.80006 0.83676 0.77804 1.20540 1.22449 1.18994 1.21057 0.88755 0.94504 1.50835 0.90856 1.19127 0.96792 0.91732 0.92779 1.21819 0.91881 0.99497 1.01894 1.21749 0.95961 0.95777 0.87888 1.48180 1.42414 1.14604 1.28429 1.20599 0.78736 0.87622 0.82963 1.90646 1.58562 1.19107 1.74717 1.21744 1.00447 0.99083 0.96015 1.20822 0.96685 0.93804 0.95861 0.89291 1.23377 0.98964 0.98205 0.94828 1.23274 0.99362 1.00544 0.97364 1.21313 0.98281 0.95246 0.98611 1.22568 1.00919 0.97652 0.94914 1.22017 0.96966 0.81897 1.01297 1.22451 0.91476 1.01070 1.02315 0.92640 0.95425 0.92353 0.91402 0.89878 0.92163 0.89001 0.88715 0.85716 0.86106 0.91483 0.91080 0.90959 0.90865 0.91775 0.90701 0.91595 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 2 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 3 Si 0.89 20.90 24.38 -169.99 -4.14 16.75 16 4 H -0.28 -6.30 6.86 56.52 0.39 -5.92 16 5 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -5.86 6.53 56.52 0.37 -5.49 16 7 C -0.51 -13.97 9.14 -34.44 -0.31 -14.28 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C 0.01 0.32 1.65 -91.73 -0.15 0.17 16 10 C -0.11 -2.19 5.30 -26.61 -0.14 -2.33 16 11 C 0.11 1.84 6.43 -3.71 -0.02 1.82 16 12 N -0.60 -9.88 2.97 -172.51 -0.51 -10.39 16 13 C 0.51 8.08 7.50 -10.99 -0.08 8.00 16 14 O -0.55 -10.16 14.33 5.55 0.08 -10.08 16 15 C -0.13 -1.59 3.44 -27.89 -0.10 -1.69 16 16 C -0.05 -0.62 2.51 -90.72 -0.23 -0.84 16 17 H 0.09 1.13 7.90 -51.93 -0.41 0.72 16 18 C -0.14 -1.72 9.27 -35.75 -0.33 -2.05 16 19 C -0.19 -2.03 10.79 -35.75 -0.39 -2.42 16 20 C -0.10 -0.88 6.80 -26.82 -0.18 -1.07 16 21 C -0.12 -1.12 6.71 -25.01 -0.17 -1.28 16 22 C 0.10 1.59 6.37 -3.49 -0.02 1.56 16 23 C -0.14 -2.68 4.86 -26.39 -0.13 -2.81 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.42 7.01 -51.93 -0.36 1.06 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 31 H 0.09 1.09 7.69 -51.93 -0.40 0.69 16 32 H 0.12 1.79 7.59 -52.48 -0.40 1.39 16 33 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.62 7.92 -51.93 -0.41 0.21 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.96 5.93 -51.93 -0.31 0.65 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.20 3.24 -51.93 -0.17 1.03 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -30.60 314.26 -8.07 -38.67 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.65 Total: 2.01 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -2.35 Total: -15.40 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.26 Total: -36.69 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.14 Total: 16.75 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.60 -8.07 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334250363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.576 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds