Wall clock time and date at job start Mon Mar 30 2020 00:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99868 * 2 1 4 4 H 1.48497 * 109.47016 * 269.99643 * 3 2 1 5 5 H 1.48497 * 109.46744 * 29.99987 * 3 2 1 6 6 H 1.48504 * 109.47016 * 150.00047 * 3 2 1 7 7 C 1.37877 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99567 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00245 * 180.02562 * 7 2 1 10 10 C 1.53045 * 109.46018 * 179.97438 * 9 7 2 11 11 C 1.53187 * 109.31323 * 181.38223 * 10 9 7 12 12 N 1.46927 * 108.77856 * 305.36837 * 11 10 9 13 13 C 1.34774 * 120.63299 * 233.58366 * 12 11 10 14 14 O 1.21284 * 119.99810 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00159 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47320 * 180.02562 * 15 13 12 17 17 H 1.09005 * 110.34587 * 307.29545 * 16 15 13 18 18 C 1.51100 * 110.48430 * 69.63892 * 16 15 13 19 19 C 1.30724 * 111.14096 * 135.39640 * 18 16 15 20 20 C 1.51106 * 110.98690 * 359.84700 * 19 18 16 21 21 C 1.54630 * 110.39024 * 185.00318 * 16 15 13 22 22 C 1.46927 * 118.73716 * 53.85848 * 12 11 10 23 23 C 1.53039 * 109.45964 * 300.06490 * 9 7 2 24 24 H 0.96996 * 120.00306 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.44657 * 60.03312 * 9 7 2 26 26 H 1.08999 * 109.49469 * 61.43009 * 10 9 7 27 27 H 1.09002 * 109.52251 * 301.35372 * 10 9 7 28 28 H 1.08997 * 109.58624 * 185.57890 * 11 10 9 29 29 H 1.09004 * 109.58437 * 65.15275 * 11 10 9 30 30 H 1.08998 * 109.46960 * 60.00682 * 15 13 12 31 31 H 1.08994 * 109.47434 * 300.00383 * 15 13 12 32 32 H 1.08004 * 124.45196 * 315.31945 * 18 16 15 33 33 H 1.08003 * 124.56566 * 179.97438 * 19 18 16 34 34 H 1.09002 * 110.38747 * 224.83749 * 20 19 18 35 35 H 1.09000 * 110.38500 * 102.57217 * 20 19 18 36 36 H 1.09003 * 111.03946 * 98.41034 * 21 16 15 37 37 H 1.09001 * 111.07005 * 334.48878 * 21 16 15 38 38 H 1.09003 * 109.58658 * 65.92814 * 22 12 11 39 39 H 1.08995 * 109.58437 * 186.35514 * 22 12 11 40 40 H 1.08998 * 109.49516 * 298.56405 * 23 9 7 41 41 H 1.08994 * 109.49602 * 58.63238 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6370 -0.0001 11 6 5.5529 -2.6332 0.0354 12 7 6.0499 -1.8175 -1.0810 13 6 6.9444 -2.3208 -1.9544 14 8 7.3466 -3.4575 -1.8231 15 6 7.4441 -1.4718 -3.0947 16 6 8.4422 -2.2760 -3.9302 17 1 9.2228 -2.6909 -3.2924 18 6 7.7346 -3.3797 -4.6814 19 6 8.1445 -3.4442 -5.9210 20 6 9.1909 -2.3905 -6.2006 21 6 9.0630 -1.3861 -5.0318 22 6 5.5576 -0.4405 -1.2237 23 6 4.0219 -0.4702 -1.2481 24 1 -0.4850 0.8400 -0.0004 25 1 3.8741 -0.6812 0.8910 26 1 3.6797 -3.1435 -0.9027 27 1 3.6385 -3.1587 0.8770 28 1 5.9233 -3.6534 -0.0643 29 1 5.8955 -2.2084 0.9790 30 1 7.9349 -0.5831 -2.6980 31 1 6.6036 -1.1736 -3.7212 32 1 6.9887 -4.0312 -4.2505 33 1 7.7825 -4.1542 -6.6499 34 1 8.9874 -1.8959 -7.1503 35 1 10.1854 -2.8364 -6.2109 36 1 10.0410 -1.0125 -4.7282 37 1 8.3966 -0.5641 -5.2934 38 1 5.9006 0.1594 -0.3807 39 1 5.9310 -0.0136 -2.1545 40 1 3.6802 -0.9968 -2.1392 41 1 3.6388 0.5501 -1.2591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334250363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:34 Heat of formation + Delta-G solvation = -46.285663 kcal Electronic energy + Delta-G solvation = -20269.113867 eV Core-core repulsion = 17340.859142 eV Total energy + Delta-G solvation = -2928.254725 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32405 -39.52545 -38.30429 -35.30921 -33.60845 -32.69088 -31.64160 -29.75234 -28.36702 -26.44981 -24.24343 -24.12745 -21.74010 -21.20244 -19.97935 -19.41415 -18.86935 -18.06755 -17.07925 -16.75567 -16.49038 -16.26525 -15.77309 -15.20365 -14.98993 -14.67516 -14.40812 -14.16989 -13.71117 -13.57122 -13.44728 -12.92086 -12.77396 -12.70560 -12.64469 -12.28592 -12.15085 -12.04180 -11.96608 -11.75313 -11.67327 -11.49894 -11.17667 -11.02417 -10.69480 -10.60522 -9.76237 -9.55367 -8.27904 -6.33553 1.32595 1.39375 1.40477 1.51213 1.68536 2.09898 2.35689 3.07171 3.50623 3.75122 3.85579 3.99523 4.05013 4.13476 4.22697 4.28284 4.38068 4.44881 4.47914 4.58330 4.63603 4.69162 4.74654 4.77944 4.82021 4.95305 5.00069 5.01424 5.06246 5.11374 5.14898 5.31619 5.39418 5.45738 5.58851 5.67470 5.70830 5.75110 5.99724 6.31380 6.51108 6.73573 7.22694 7.32199 8.89425 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.004768 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.553147 B = 5871.125485 C = 6206.508667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.005 3.995 3 Si 0.954 3.046 4 H -0.257 1.257 5 H -0.304 1.304 6 H -0.234 1.234 7 C -0.524 4.524 8 H 0.023 0.977 9 C 0.014 3.986 10 C -0.106 4.106 11 C 0.116 3.884 12 N -0.609 5.609 13 C 0.508 3.492 14 O -0.584 6.584 15 C -0.127 4.127 16 C -0.052 4.052 17 H 0.073 0.927 18 C -0.171 4.171 19 C -0.175 4.175 20 C -0.099 4.099 21 C -0.115 4.115 22 C 0.107 3.893 23 C -0.134 4.134 24 H 0.265 0.735 25 H 0.033 0.967 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.052 0.948 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.757 2.160 -9.644 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.191 4.191 3 Si 0.779 3.221 4 H -0.183 1.183 5 H -0.232 1.232 6 H -0.157 1.157 7 C -0.562 4.562 8 H 0.041 0.959 9 C -0.005 4.005 10 C -0.145 4.145 11 C -0.006 4.006 12 N -0.342 5.342 13 C 0.298 3.702 14 O -0.465 6.465 15 C -0.167 4.167 16 C -0.070 4.070 17 H 0.091 0.909 18 C -0.189 4.189 19 C -0.193 4.193 20 C -0.136 4.136 21 C -0.152 4.152 22 C -0.015 4.015 23 C -0.172 4.172 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.142 0.858 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.070 0.930 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.826 1.665 -9.567 22.979 hybrid contribution -1.088 0.057 0.347 1.144 sum 19.738 1.722 -9.221 21.853 Atomic orbital electron populations 1.70080 1.08640 1.28133 1.52751 1.26045 0.95495 1.03620 0.93964 0.85773 0.79508 0.77631 0.79156 1.18313 1.23208 1.15697 1.21396 0.91785 0.92732 1.50283 0.95861 1.19088 0.93257 0.93688 0.94426 1.21696 0.94201 0.97830 1.00741 1.21570 0.93440 0.96266 0.89353 1.48282 1.42632 1.14941 1.28316 1.21350 0.78021 0.87564 0.83234 1.90637 1.59638 1.20792 1.75422 1.21828 1.00996 0.99358 0.94500 1.20810 0.96079 0.93861 0.96285 0.90869 1.23327 1.00007 0.99533 0.96007 1.23586 0.98652 1.00394 0.96667 1.21390 0.97902 0.94756 0.99506 1.22581 1.01870 0.97318 0.93476 1.22074 0.93404 0.81710 1.04300 1.22300 0.95000 0.99943 0.99928 0.92625 0.94899 0.94358 0.91935 0.90348 0.90335 0.85804 0.87754 0.88693 0.85436 0.89829 0.90123 0.89169 0.89652 0.89832 0.86795 0.92961 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.61 13.96 21.45 0.30 -59.31 16 2 C 0.01 0.29 5.45 84.66 0.46 0.75 16 3 Si 0.95 42.10 24.38 68.60 1.67 43.77 16 4 H -0.26 -10.47 6.86 99.48 0.68 -9.79 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.23 -9.08 6.53 99.48 0.65 -8.43 16 7 C -0.52 -29.53 9.14 25.60 0.23 -29.30 16 8 H 0.02 1.48 7.99 -2.91 -0.02 1.46 16 9 C 0.01 0.63 1.65 -11.51 -0.02 0.61 16 10 C -0.11 -4.20 5.30 30.67 0.16 -4.03 16 11 C 0.12 3.82 6.43 86.36 0.56 4.37 16 12 N -0.61 -18.40 2.97 -818.09 -2.43 -20.82 16 13 C 0.51 15.00 7.50 87.66 0.66 15.66 16 14 O -0.58 -21.29 14.33 -3.04 -0.04 -21.33 16 15 C -0.13 -2.61 3.44 29.85 0.10 -2.50 16 16 C -0.05 -1.08 2.51 -10.86 -0.03 -1.10 16 17 H 0.07 1.74 7.90 -2.38 -0.02 1.72 16 18 C -0.17 -4.20 9.27 26.06 0.24 -3.95 16 19 C -0.18 -3.48 10.79 26.06 0.28 -3.20 16 20 C -0.10 -1.45 6.80 30.53 0.21 -1.24 16 21 C -0.12 -1.62 6.71 31.71 0.21 -1.41 16 22 C 0.11 2.90 6.37 86.51 0.55 3.45 16 23 C -0.13 -4.98 4.86 30.82 0.15 -4.83 16 24 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 25 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.08 2.66 7.01 -2.39 -0.02 2.64 16 29 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.12 1.77 7.93 -2.39 -0.02 1.75 16 31 H 0.10 1.99 7.69 -2.39 -0.02 1.97 16 32 H 0.09 2.85 7.59 -2.91 -0.02 2.83 16 33 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.02 7.92 -2.39 -0.02 1.00 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.11 2.24 5.93 -2.39 -0.01 2.23 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 2.06 3.24 -2.39 -0.01 2.05 16 Total: -1.00 -70.51 314.26 4.19 -66.32 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.91 Total: 18.11 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 3.77 Total: -26.73 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -2.13 Total: -80.14 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.04 Total: -21.33 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.67 Total: 43.77 kcal Total: -70.51 4.19 -66.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334250363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.036 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds