Wall clock time and date at job start Mon Mar 30 2020 00:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32746 * 124.63311 * 2 1 4 4 C 1.46950 * 124.63165 * 0.02562 * 3 2 1 5 5 O 1.21661 * 120.00191 * 297.67192 * 4 3 2 6 6 N 1.34782 * 119.99979 * 117.66530 * 4 3 2 7 7 C 1.36824 * 119.99767 * 182.06494 * 6 4 3 8 8 H 1.08003 * 119.99732 * 254.57143 * 7 6 4 9 9 C 1.39070 * 119.99778 * 74.57378 * 7 6 4 10 10 N 1.31343 * 120.00234 * 58.08707 * 9 7 6 11 11 Si 1.86799 * 120.00013 * 238.08251 * 9 7 6 12 12 H 1.48507 * 109.46885 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.47226 * 120.00360 * 11 9 7 14 14 H 1.48503 * 109.47220 * 240.00379 * 11 9 7 15 15 C 1.46499 * 120.00140 * 2.06613 * 6 4 3 16 16 C 1.54263 * 110.03264 * 183.04535 * 15 6 4 17 17 C 1.54964 * 104.15582 * 95.75621 * 16 15 6 18 18 C 1.54892 * 102.77881 * 37.88784 * 17 16 15 19 19 C 1.53870 * 110.03194 * 300.26906 * 15 6 4 20 20 C 1.51109 * 110.73652 * 179.73872 * 3 2 1 21 21 C 1.54575 * 104.84775 * 16.85478 * 20 3 2 22 22 C 1.51110 * 124.62939 * 180.14652 * 2 1 3 23 23 H 1.08999 * 109.47527 * 89.99442 * 1 2 3 24 24 H 1.08999 * 109.47112 * 209.99745 * 1 2 3 25 25 H 1.08999 * 109.47031 * 329.99894 * 1 2 3 26 26 H 0.97006 * 120.00411 * 130.66815 * 10 9 7 27 27 H 1.09003 * 110.01527 * 61.65632 * 15 6 4 28 28 H 1.09003 * 110.48606 * 214.39954 * 16 15 6 29 29 H 1.08997 * 110.48503 * 337.04744 * 16 15 6 30 30 H 1.08997 * 110.72389 * 279.56972 * 17 16 15 31 31 H 1.09002 * 110.91957 * 156.29767 * 17 16 15 32 32 H 1.09001 * 110.48731 * 203.40405 * 18 17 16 33 33 H 1.09003 * 110.59671 * 80.81518 * 18 17 16 34 34 H 1.09000 * 110.03312 * 359.94805 * 19 15 6 35 35 H 1.08999 * 110.03726 * 121.33454 * 19 15 6 36 36 H 1.09006 * 110.36275 * 135.69756 * 20 3 2 37 37 H 1.08996 * 110.36384 * 258.01430 * 20 3 2 38 38 H 1.09001 * 110.97646 * 93.05180 * 21 20 3 39 39 H 1.09001 * 110.98074 * 216.80225 * 21 20 3 40 40 H 1.09007 * 110.50664 * 44.68775 * 22 2 1 41 41 H 1.08996 * 110.16878 * 282.41008 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2614 1.0922 0.0000 4 6 1.7411 2.4666 0.0005 5 8 1.0678 2.8625 -0.9322 6 7 2.0098 3.2884 1.0345 7 6 1.4904 4.5541 1.0551 8 1 2.1264 5.4022 0.8485 9 6 0.1436 4.7484 1.3421 10 7 -0.3546 4.3174 2.4784 11 14 -0.9570 5.6223 0.1115 12 1 -0.1593 6.0057 -1.0810 13 1 -2.0574 4.7144 -0.3006 14 1 -1.5293 6.8413 0.7376 15 6 2.8579 2.8266 2.1361 16 6 2.9509 3.9164 3.2240 17 6 1.8642 3.5171 4.2542 18 6 1.9621 1.9714 4.2738 19 6 2.2292 1.5906 2.8029 20 6 3.7283 0.7293 0.0064 21 6 3.7710 -0.7550 -0.4228 22 6 2.3657 -1.2434 -0.0032 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 -0.8922 4.9092 3.0278 27 1 3.8535 2.5844 1.7642 28 1 3.9372 3.9090 3.6880 29 1 2.7345 4.8973 2.8009 30 1 0.8780 3.8375 3.9183 31 1 2.0891 3.9310 5.2372 32 1 1.0245 1.5341 4.6168 33 1 2.7876 1.6475 4.9076 34 1 1.2926 1.3349 2.3074 35 1 2.9193 0.7483 2.7540 36 1 4.2748 1.3463 -0.7069 37 1 4.1437 0.8468 1.0073 38 1 3.9102 -0.8459 -1.5000 39 1 4.5495 -1.2949 0.1162 40 1 1.9854 -1.9683 -0.7230 41 1 2.3983 -1.6801 0.9949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334390075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:06 Heat of formation + Delta-G solvation = 0.320207 kcal Electronic energy + Delta-G solvation = -21740.344199 eV Core-core repulsion = 18814.110456 eV Total energy + Delta-G solvation = -2926.233743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.52017 -37.46273 -36.26564 -33.23782 -31.80951 -30.91093 -28.81841 -27.47941 -26.59606 -25.38401 -24.45034 -21.30642 -20.29574 -19.52831 -19.15593 -17.56998 -16.21986 -15.52887 -15.34395 -14.98195 -14.40001 -14.01586 -13.95979 -13.41829 -13.13021 -12.84816 -12.49612 -12.20577 -12.11346 -11.84143 -11.47872 -11.35024 -11.01733 -10.97423 -10.85868 -10.78716 -10.64754 -10.55873 -10.23884 -10.10724 -10.06236 -9.88792 -9.72380 -9.34262 -8.69544 -8.35270 -7.96010 -6.90575 -5.67095 -3.91741 2.43197 3.12725 3.47411 3.61239 3.94349 4.18163 4.61660 4.81953 5.03347 5.13549 5.23621 5.54451 5.59617 5.70656 5.72472 5.87958 5.90383 5.94111 5.98369 6.11922 6.17644 6.22856 6.30901 6.33738 6.43766 6.49415 6.55671 6.57282 6.59524 6.72016 6.83693 6.90052 7.04198 7.09777 7.27988 7.33442 7.52954 7.83637 8.06188 8.45557 9.01725 9.15009 9.45361 10.23555 10.62751 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017820 B = 0.010063 C = 0.007817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.922595 B = 2781.866802 C = 3581.275065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.114 4.114 3 C -0.147 4.147 4 C 0.534 3.466 5 O -0.564 6.564 6 N -0.432 5.432 7 C -0.400 4.400 8 H 0.084 0.916 9 C 0.154 3.846 10 N -0.855 5.855 11 Si 0.878 3.122 12 H -0.265 1.265 13 H -0.280 1.280 14 H -0.294 1.294 15 C 0.125 3.875 16 C -0.108 4.108 17 C -0.141 4.141 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.085 4.085 21 C -0.122 4.122 22 C -0.086 4.086 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.302 0.698 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.030 0.970 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.696 -7.938 2.216 10.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.150 4.150 4 C 0.322 3.678 5 O -0.446 6.446 6 N -0.153 5.153 7 C -0.524 4.524 8 H 0.101 0.899 9 C -0.059 4.059 10 N -0.493 5.493 11 Si 0.706 3.294 12 H -0.190 1.190 13 H -0.206 1.206 14 H -0.222 1.222 15 C 0.022 3.978 16 C -0.145 4.145 17 C -0.178 4.178 18 C -0.152 4.152 19 C -0.160 4.160 20 C -0.122 4.122 21 C -0.159 4.159 22 C -0.124 4.124 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.155 0.845 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.846 -8.127 1.606 9.598 hybrid contribution -0.312 0.470 -0.238 0.612 sum 4.534 -7.657 1.368 9.003 Atomic orbital electron populations 1.20461 0.91187 1.02114 1.01961 1.22282 0.95255 0.93849 1.00166 1.21969 0.95679 0.94482 1.02870 1.18101 0.82140 0.84259 0.83333 1.90623 1.41538 1.76264 1.36139 1.43347 1.44586 1.12235 1.15145 1.18844 0.89472 0.84106 1.59983 0.89866 1.25697 0.95047 0.90110 0.95060 1.67841 1.38410 1.31246 1.11815 0.86830 0.80746 0.77251 0.84595 1.18955 1.20595 1.22200 1.21889 0.92533 0.93735 0.89605 1.22362 0.95942 1.00958 0.95227 1.23097 1.05261 0.93327 0.96140 1.22221 0.98956 0.98282 0.95768 1.22589 1.00515 0.96842 0.96094 1.21248 0.93589 0.95586 1.01777 1.22389 0.96638 0.95873 1.01023 1.21207 0.93980 0.95957 1.01209 0.91466 0.92493 0.91245 0.88037 0.94034 0.94758 0.88759 0.84491 0.95083 0.93254 0.94111 0.91411 0.93907 0.91402 0.90238 0.91342 0.91173 0.91437 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 10.03 36.01 0.36 -1.48 16 2 C -0.11 -2.07 5.66 -101.03 -0.57 -2.64 16 3 C -0.15 -2.96 3.31 -102.77 -0.34 -3.30 16 4 C 0.53 13.44 6.00 -12.73 -0.08 13.36 16 5 O -0.56 -16.31 16.73 5.22 0.09 -16.22 16 6 N -0.43 -10.68 2.65 -107.92 -0.29 -10.97 16 7 C -0.40 -10.64 5.80 -15.02 -0.09 -10.73 16 8 H 0.08 2.26 7.91 -52.48 -0.41 1.84 16 9 C 0.15 4.06 5.16 -17.45 -0.09 3.97 16 10 N -0.85 -21.83 10.46 55.50 0.58 -21.25 16 11 Si 0.88 22.05 29.75 -169.99 -5.06 17.00 16 12 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.13 2.64 2.89 -66.82 -0.19 2.45 16 16 C -0.11 -2.19 6.01 -25.03 -0.15 -2.34 16 17 C -0.14 -2.84 6.91 -24.70 -0.17 -3.01 16 18 C -0.11 -2.13 6.83 -25.07 -0.17 -2.30 16 19 C -0.12 -2.39 4.79 -25.62 -0.12 -2.52 16 20 C -0.08 -1.38 5.93 -26.86 -0.16 -1.54 16 21 C -0.12 -1.59 7.16 -25.08 -0.18 -1.77 16 22 C -0.09 -1.20 6.75 -26.86 -0.18 -1.38 16 23 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.52 7.62 -51.93 -0.40 1.12 16 26 H 0.30 7.18 8.81 -40.82 -0.36 6.82 16 27 H 0.04 0.82 6.29 -51.93 -0.33 0.50 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.13 5.97 -51.93 -0.31 1.82 16 30 H 0.14 3.15 4.61 -51.93 -0.24 2.91 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.51 6.40 -51.93 -0.33 1.18 16 35 H 0.04 0.74 7.30 -51.93 -0.38 0.36 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.08 1.24 5.53 -51.93 -0.29 0.95 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 314.13 15.07 4.73 4.73 Total: -1.00 -29.33 314.13 -8.56 -37.89 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.49 Total: 2.05 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -2.13 Total: -13.23 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.29 Total: -32.22 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.09 Total: -16.22 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.06 Total: 17.00 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.33 -8.56 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334390075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.212 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds