Wall clock time and date at job start Mon Mar 30 2020 00:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29176 * 118.04233 * 2 1 4 4 C 1.50704 * 117.75527 * 359.56222 * 3 2 1 5 5 C 1.50059 * 124.28227 * 179.54525 * 3 2 1 6 6 C 1.53026 * 110.03709 * 17.05302 * 5 3 2 7 7 H 1.09008 * 109.64078 * 70.31267 * 6 5 3 8 8 C 1.50701 * 109.64537 * 190.73166 * 6 5 3 9 9 O 1.21295 * 119.99690 * 119.99663 * 8 6 5 10 10 N 1.34770 * 119.99896 * 300.00191 * 8 6 5 11 11 C 1.37106 * 120.00036 * 179.97438 * 10 8 6 12 12 H 1.08000 * 120.00337 * 223.70922 * 11 10 8 13 13 C 1.38948 * 119.99521 * 43.70931 * 11 10 8 14 14 N 1.31408 * 120.00240 * 18.39991 * 13 11 10 15 15 Si 1.86804 * 119.99978 * 198.40274 * 13 11 10 16 16 H 1.48500 * 109.46515 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47368 * 119.99793 * 15 13 11 18 18 H 1.48503 * 109.46897 * 240.00325 * 15 13 11 19 19 C 1.46498 * 120.00359 * 359.97438 * 10 8 6 20 20 C 1.53002 * 117.50159 * 187.52436 * 19 10 8 21 21 C 1.53004 * 117.50205 * 118.86682 * 19 10 8 22 22 C 1.53392 * 108.43778 * 310.63470 * 6 5 3 23 23 C 1.50063 * 117.96270 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47458 * 270.05751 * 1 2 3 25 25 H 1.09000 * 109.47478 * 30.05588 * 1 2 3 26 26 H 1.09010 * 109.47133 * 150.05566 * 1 2 3 27 27 H 1.09002 * 109.46557 * 269.98880 * 4 3 2 28 28 H 1.08998 * 109.47130 * 29.98349 * 4 3 2 29 29 H 1.08993 * 109.47305 * 149.99152 * 4 3 2 30 30 H 1.08995 * 109.36307 * 256.91579 * 5 3 2 31 31 H 1.09000 * 109.35859 * 137.18557 * 5 3 2 32 32 H 0.97004 * 120.00141 * 174.83441 * 14 13 11 33 33 H 1.09003 * 115.54844 * 333.19835 * 19 10 8 34 34 H 1.09001 * 117.49917 * 0.02562 * 20 19 10 35 35 H 1.09002 * 117.49807 * 145.02003 * 20 19 10 36 36 H 1.08997 * 117.49832 * 214.98668 * 21 19 10 37 37 H 1.09007 * 117.49547 * 359.97438 * 21 19 10 38 38 H 1.09002 * 109.63925 * 187.12212 * 22 6 5 39 39 H 1.09005 * 109.63683 * 307.74444 * 22 6 5 40 40 H 1.08997 * 109.36142 * 76.94598 * 23 2 1 41 41 H 1.09003 * 109.35882 * 317.35933 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1143 1.1401 0.0000 4 6 1.2672 2.3865 -0.0102 5 6 3.6059 1.3032 0.0098 6 6 4.2794 -0.0076 -0.4022 7 1 4.1059 -0.1912 -1.4626 8 6 5.7607 0.0793 -0.1389 9 8 6.2884 -0.7042 0.6220 10 7 6.4990 1.0275 -0.7489 11 6 7.8466 1.1069 -0.5090 12 1 8.3100 2.0683 -0.3437 13 6 8.6161 -0.0497 -0.4785 14 7 8.1606 -1.1564 -1.0212 15 14 10.2981 -0.0313 0.3340 16 1 10.5764 1.3273 0.8649 17 1 10.3204 -1.0128 1.4482 18 1 11.3347 -0.3936 -0.6657 19 6 5.8618 1.9734 -1.6683 20 6 6.7742 2.9102 -2.4626 21 6 5.9286 3.4597 -1.3111 22 6 3.6702 -1.1469 0.4247 23 6 2.2106 -1.3254 0.0006 24 1 -0.3634 0.0010 1.0276 25 1 -0.3634 0.8895 -0.5147 26 1 -0.3634 -0.8906 -0.5130 27 1 1.0701 2.6833 -1.0403 28 1 0.3233 2.1885 0.4977 29 1 1.7954 3.1890 0.5044 30 1 3.9328 1.5777 1.0127 31 1 3.8880 2.0898 -0.6901 32 1 8.7266 -1.9429 -1.0667 33 1 4.9580 1.6142 -2.1605 34 1 7.8486 2.8223 -2.3015 35 1 6.4705 3.1675 -3.4774 36 1 5.0689 4.0783 -1.5687 37 1 6.4463 3.7337 -0.3918 38 1 4.2209 -2.0691 0.2395 39 1 3.7162 -0.8956 1.4844 40 1 2.1749 -1.7540 -1.0010 41 1 1.7119 -1.9990 0.6975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335356417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:45 Heat of formation + Delta-G solvation = 3.936276 kcal Electronic energy + Delta-G solvation = -20983.792582 eV Core-core repulsion = 18057.715643 eV Total energy + Delta-G solvation = -2926.076938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.53200 -37.81575 -36.01854 -33.29845 -32.46906 -31.57090 -30.60365 -27.32180 -26.13054 -24.75206 -22.79685 -21.77724 -21.49125 -20.79388 -18.84484 -16.78093 -16.25315 -15.99038 -14.97437 -14.71059 -14.47018 -14.27196 -13.82574 -13.61386 -13.42161 -13.26470 -12.65223 -12.43061 -12.23221 -11.89192 -11.67395 -11.55021 -11.49134 -11.34662 -11.07382 -10.87753 -10.81038 -10.55701 -10.37974 -10.22274 -10.07012 -9.82282 -9.78015 -9.59120 -8.65105 -8.23366 -7.86785 -6.94580 -6.05919 -3.80536 2.45891 3.31972 3.41678 3.43742 4.18803 4.31320 4.79953 4.85156 4.99519 5.06079 5.29386 5.37022 5.49291 5.52326 5.61934 5.63233 5.67052 5.68627 5.74873 5.82315 5.88335 5.94005 6.01185 6.06460 6.09813 6.12235 6.24701 6.27262 6.29587 6.40602 6.46452 6.58644 6.76095 6.80948 6.92236 6.98303 7.02665 7.36526 7.67042 8.33427 9.13322 9.24223 9.73815 10.38708 11.03359 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.024738 B = 0.006679 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.609281 B = 4191.298645 C = 4994.475687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 C -0.122 4.122 4 C -0.122 4.122 5 C -0.076 4.076 6 C -0.099 4.099 7 H 0.077 0.923 8 C 0.490 3.510 9 O -0.532 6.532 10 N -0.429 5.429 11 C -0.348 4.348 12 H 0.076 0.924 13 C 0.073 3.927 14 N -0.834 5.834 15 Si 0.910 3.090 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.286 1.286 19 C 0.080 3.920 20 C -0.179 4.179 21 C -0.208 4.208 22 C -0.093 4.093 23 C -0.079 4.079 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.262 0.738 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.747 5.225 -1.175 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.138 4.138 3 C -0.122 4.122 4 C -0.179 4.179 5 C -0.113 4.113 6 C -0.121 4.121 7 H 0.095 0.905 8 C 0.277 3.723 9 O -0.410 6.410 10 N -0.150 5.150 11 C -0.475 4.475 12 H 0.094 0.906 13 C -0.137 4.137 14 N -0.467 5.467 15 Si 0.738 3.262 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.213 1.213 19 C -0.027 4.027 20 C -0.216 4.216 21 C -0.247 4.247 22 C -0.131 4.131 23 C -0.116 4.116 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.452 4.573 -0.742 13.286 hybrid contribution 0.828 -0.002 0.137 0.839 sum -11.624 4.571 -0.605 12.505 Atomic orbital electron populations 1.20986 0.93321 1.01912 1.01439 1.20607 0.95051 0.94847 1.03287 1.20705 0.95675 0.94358 1.01506 1.21016 0.99061 0.96216 1.01605 1.20546 0.90533 0.97723 1.02494 1.21256 0.94769 0.95638 1.00417 0.90518 1.19719 0.86437 0.83510 0.82621 1.90515 1.72604 1.40468 1.37371 1.42788 1.06652 1.28414 1.37111 1.18873 0.82430 0.93680 1.52518 0.90615 1.25222 0.98222 0.95396 0.94873 1.69837 1.36317 1.02248 1.38335 0.86182 0.82297 0.78336 0.79414 1.19635 1.20703 1.21260 1.21711 0.97714 0.86787 0.96460 1.23118 0.99785 1.04077 0.94666 1.23329 1.02501 0.98618 1.00293 1.21325 0.93313 0.98870 0.99604 1.20403 0.95677 0.94333 1.01208 0.92094 0.91819 0.92514 0.91880 0.91885 0.92196 0.90990 0.89794 0.92752 0.87838 0.87533 0.89962 0.89901 0.89102 0.90918 0.91881 0.91429 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 8.83 36.00 0.32 -0.98 16 2 C -0.14 -1.91 5.83 -100.88 -0.59 -2.49 16 3 C -0.12 -1.75 5.82 -100.88 -0.59 -2.34 16 4 C -0.12 -1.40 8.83 36.01 0.32 -1.08 16 5 C -0.08 -1.28 4.60 -28.18 -0.13 -1.41 16 6 C -0.10 -1.97 1.77 -91.55 -0.16 -2.13 16 7 H 0.08 1.51 7.58 -51.92 -0.39 1.11 16 8 C 0.49 12.53 6.35 -10.99 -0.07 12.46 16 9 O -0.53 -15.88 13.62 5.54 0.08 -15.81 16 10 N -0.43 -10.79 2.85 -107.72 -0.31 -11.10 16 11 C -0.35 -9.59 7.80 -14.93 -0.12 -9.71 16 12 H 0.08 2.03 7.43 -52.49 -0.39 1.64 16 13 C 0.07 2.09 4.38 -17.47 -0.08 2.01 16 14 N -0.83 -25.05 11.70 55.50 0.65 -24.41 16 15 Si 0.91 22.23 29.59 -169.99 -5.03 17.20 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 C 0.08 1.60 4.35 -67.93 -0.30 1.31 16 20 C -0.18 -3.27 9.81 -26.70 -0.26 -3.53 16 21 C -0.21 -3.57 9.62 -26.69 -0.26 -3.82 16 22 C -0.09 -1.74 4.71 -26.51 -0.12 -1.86 16 23 C -0.08 -1.17 5.77 -28.17 -0.16 -1.33 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.62 6.14 -51.93 -0.32 0.31 16 26 H 0.06 0.57 8.08 -51.92 -0.42 0.15 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.64 6.12 -51.93 -0.32 0.32 16 29 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 31 H 0.08 1.36 4.80 -51.93 -0.25 1.11 16 32 H 0.26 7.54 8.32 -40.82 -0.34 7.20 16 33 H 0.10 1.91 6.11 -51.93 -0.32 1.59 16 34 H 0.11 2.17 6.84 -51.93 -0.36 1.81 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 38 H 0.07 1.49 7.90 -51.93 -0.41 1.08 16 39 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -32.22 318.16 -8.54 -40.76 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.53 Total: 3.47 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.20 Total: -14.92 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.34 Total: -35.50 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.08 Total: -15.81 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.22 -8.54 -40.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335356417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.695 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds