Wall clock time and date at job start Sun Mar 29 2020 23:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00270 * 2 1 4 4 H 1.48503 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47249 * 299.99711 * 3 2 1 6 6 H 1.48498 * 109.47290 * 60.00341 * 3 2 1 7 7 C 1.37886 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46951 * 179.97438 * 9 7 2 11 11 C 1.53356 * 109.41769 * 295.13022 * 10 9 7 12 12 C 1.53188 * 109.15001 * 178.67721 * 11 10 9 13 13 N 1.46922 * 108.89305 * 54.57113 * 12 11 10 14 14 C 1.34780 * 120.62539 * 126.34718 * 13 12 11 15 15 O 1.21616 * 119.99704 * 173.70150 * 14 13 12 16 16 C 1.47101 * 120.00191 * 353.69729 * 14 13 12 17 17 C 1.32619 * 124.62040 * 204.49476 * 16 14 13 18 18 C 1.51115 * 110.75624 * 180.02562 * 17 16 14 19 19 C 1.54572 * 104.84095 * 16.59663 * 18 17 16 20 20 C 1.51106 * 124.61937 * 24.19246 * 16 14 13 21 21 C 1.46920 * 118.74263 * 306.32405 * 13 12 11 22 22 C 1.53034 * 109.46087 * 175.00153 * 10 9 7 23 23 H 0.96998 * 119.99487 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47331 * 60.00055 * 9 7 2 25 25 H 1.08995 * 109.47281 * 299.99879 * 9 7 2 26 26 H 1.08995 * 109.45857 * 55.02667 * 10 9 7 27 27 H 1.09005 * 109.68615 * 58.70839 * 11 10 9 28 28 H 1.09007 * 109.46953 * 298.51168 * 11 10 9 29 29 H 1.09001 * 109.58343 * 294.71479 * 12 11 10 30 30 H 1.09001 * 109.58893 * 174.43821 * 12 11 10 31 31 H 1.08000 * 124.62146 * 0.02562 * 17 16 14 32 32 H 1.08994 * 110.36330 * 135.44089 * 18 17 16 33 33 H 1.08995 * 110.35955 * 257.75505 * 18 17 16 34 34 H 1.09001 * 110.98521 * 93.07641 * 19 18 17 35 35 H 1.09000 * 110.98243 * 216.87196 * 19 18 17 36 36 H 1.09002 * 110.36639 * 282.23976 * 20 16 14 37 37 H 1.09003 * 110.37163 * 44.56182 * 20 16 14 38 38 H 1.09007 * 109.58681 * 173.39478 * 21 13 12 39 39 H 1.08999 * 109.58773 * 293.67930 * 21 13 12 40 40 H 1.08999 * 109.49729 * 61.43433 * 22 10 9 41 41 H 1.08997 * 109.52221 * 301.35205 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 3.0432 -3.6506 -1.3089 12 6 4.0591 -4.7971 -1.2883 13 7 3.3501 -6.0562 -1.0229 14 6 3.4919 -7.1115 -1.8493 15 8 2.9932 -8.1821 -1.5594 16 6 4.2499 -6.9681 -3.1018 17 6 4.0838 -7.7302 -4.1744 18 6 5.0241 -7.3105 -5.2804 19 6 6.0944 -6.4414 -4.5816 20 6 5.3193 -5.9284 -3.3439 21 6 2.4841 -6.1434 0.1607 22 6 1.4837 -4.9838 0.1263 23 1 -0.4849 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8902 26 1 2.9288 -3.5554 0.8426 27 1 3.5684 -2.7009 -1.4104 28 1 2.3629 -3.7825 -2.1503 29 1 4.7946 -4.6194 -0.5038 30 1 4.5619 -4.8572 -2.2536 31 1 3.3734 -8.5404 -4.2475 32 1 5.4856 -8.1853 -5.7383 33 1 4.4909 -6.7258 -6.0300 34 1 6.9545 -7.0428 -4.2874 35 1 6.4001 -5.6114 -5.2186 36 1 4.8659 -4.9590 -3.5511 37 1 5.9846 -5.8607 -2.4831 38 1 1.9454 -7.0911 0.1504 39 1 3.0914 -6.0782 1.0635 40 1 0.8180 -5.1029 -0.7286 41 1 0.8983 -4.9808 1.0457 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335502282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:23 Heat of formation + Delta-G solvation = -20.397171 kcal Electronic energy + Delta-G solvation = -20194.301231 eV Core-core repulsion = 17267.169115 eV Total energy + Delta-G solvation = -2927.132116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40883 -38.09420 -37.14893 -34.00500 -32.19712 -31.10615 -29.52922 -28.50342 -27.94311 -24.82836 -22.96332 -22.46621 -21.17440 -20.53887 -19.23181 -18.22582 -16.66934 -16.30360 -15.93572 -15.91393 -14.80644 -14.59200 -14.28551 -13.72164 -13.64105 -13.00270 -12.93132 -12.74318 -12.60682 -12.29302 -12.08835 -11.84762 -11.77063 -11.42329 -11.19830 -11.14589 -10.94977 -10.71208 -10.67331 -10.35840 -10.07289 -9.78675 -9.51547 -9.23929 -9.00883 -8.95944 -8.36863 -8.27156 -6.01132 -4.03086 1.41043 3.13424 3.28714 3.35248 3.36785 3.39440 4.30552 4.39087 4.43917 4.73146 4.78429 5.05671 5.21134 5.34077 5.39020 5.42537 5.45840 5.52425 5.55216 5.57544 5.58742 5.72220 5.73565 5.89138 5.94974 6.02650 6.11731 6.16393 6.39144 6.42414 6.43311 6.54507 6.72971 6.97621 7.00093 7.11301 7.63563 7.66560 7.81133 7.98882 8.32721 8.41373 9.03694 9.60748 11.10219 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.004708 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.409739 B = 5946.373786 C = 6727.333872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.118 4.118 12 C 0.057 3.943 13 N -0.596 5.596 14 C 0.563 3.437 15 O -0.555 6.555 16 C -0.184 4.184 17 C -0.085 4.085 18 C -0.105 4.105 19 C -0.126 4.126 20 C -0.096 4.096 21 C 0.112 3.888 22 C -0.129 4.129 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.062 -12.122 -8.052 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.100 4.100 11 C -0.156 4.156 12 C -0.064 4.064 13 N -0.327 5.327 14 C 0.353 3.647 15 O -0.435 6.435 16 C -0.187 4.187 17 C -0.105 4.105 18 C -0.142 4.142 19 C -0.164 4.164 20 C -0.132 4.132 21 C -0.010 4.010 22 C -0.167 4.167 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.153 0.847 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.656 -12.541 -7.866 18.240 hybrid contribution 0.234 1.135 0.172 1.172 sum 10.890 -11.406 -7.694 17.547 Atomic orbital electron populations 1.69978 1.06063 1.26407 1.51027 1.25028 0.94791 0.99182 0.95484 0.86594 0.80106 0.84075 0.77562 1.19758 1.21096 1.21098 1.21274 0.92946 0.90933 1.50186 0.92555 1.19132 0.93632 0.91076 0.97170 1.21247 0.97967 0.94575 0.96186 1.21938 0.97580 0.97154 0.98915 1.23086 0.95723 0.83540 1.04043 1.48010 1.46128 1.12863 1.25699 1.18025 0.79947 0.83543 0.83186 1.90751 1.50617 1.26747 1.75398 1.21824 1.01417 1.00465 0.95030 1.23947 0.96908 0.96150 0.93484 1.21454 0.95712 0.99999 0.97046 1.22548 0.97660 0.99565 0.96617 1.21656 0.95472 0.97361 0.98692 1.21673 0.92566 1.00185 0.86612 1.22017 0.97587 0.94880 1.02193 0.93111 0.96668 0.96626 0.92423 0.89808 0.92414 0.91854 0.86609 0.84740 0.90405 0.89694 0.90843 0.90389 0.88474 0.90253 0.89818 0.91857 0.92143 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -13.92 8.39 -34.44 -0.29 -14.21 16 8 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 9 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 10 C -0.08 -1.59 2.10 -90.42 -0.19 -1.78 16 11 C -0.12 -2.04 5.21 -26.45 -0.14 -2.18 16 12 C 0.06 0.81 5.77 -3.71 -0.02 0.78 16 13 N -0.60 -9.28 2.97 -174.17 -0.52 -9.80 16 14 C 0.56 9.10 7.60 -12.66 -0.10 9.00 16 15 O -0.55 -10.63 16.34 5.26 0.09 -10.54 16 16 C -0.18 -2.34 5.83 -102.73 -0.60 -2.94 16 17 C -0.09 -0.94 10.51 -36.01 -0.38 -1.32 16 18 C -0.11 -0.83 6.80 -26.85 -0.18 -1.02 16 19 C -0.13 -0.96 7.17 -24.97 -0.18 -1.14 16 20 C -0.10 -0.93 4.45 -26.75 -0.12 -1.05 16 21 C 0.11 1.77 6.41 -3.72 -0.02 1.74 16 22 C -0.13 -2.23 5.36 -26.62 -0.14 -2.38 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.08 1.52 6.93 -51.93 -0.36 1.16 16 28 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.12 1.36 2.04 -72.00 -0.15 1.22 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.92 6.47 -51.93 -0.34 0.58 16 37 H 0.08 0.74 7.49 -51.93 -0.39 0.35 16 38 H 0.08 1.36 7.05 -51.93 -0.37 0.99 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 320.08 15.07 4.82 4.82 Total: -1.00 -31.69 320.08 -9.07 -40.77 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.60 Total: -1.08 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.58 Total: -14.46 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.22 Total: -35.62 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.69 -9.07 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335502282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.369 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds