Wall clock time and date at job start Sun Mar 29 2020 23:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86799 * 120.00040 * 2 1 4 4 H 1.48504 * 109.47265 * 269.99789 * 3 2 1 5 5 H 1.48499 * 109.47194 * 29.99854 * 3 2 1 6 6 H 1.48503 * 109.47392 * 149.99912 * 3 2 1 7 7 C 1.38950 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00542 * 157.61091 * 7 2 1 9 9 N 1.37096 * 119.99879 * 337.60992 * 7 2 1 10 10 C 1.34775 * 120.00301 * 319.06636 * 9 7 2 11 11 O 1.21304 * 119.99631 * 3.71322 * 10 9 7 12 12 C 1.50700 * 120.00562 * 183.71370 * 10 9 7 13 13 C 1.52997 * 119.29499 * 257.41324 * 12 10 9 14 14 C 1.53005 * 60.37769 * 248.68787 * 13 12 10 15 15 H 1.09005 * 119.75041 * 111.11948 * 14 13 12 16 16 C 1.54266 * 118.19999 * 266.38498 * 14 13 12 17 17 C 1.54893 * 104.19497 * 87.78698 * 16 14 13 18 18 C 1.54261 * 117.40848 * 53.06058 * 12 10 9 19 19 C 1.46496 * 120.00047 * 139.06571 * 9 7 2 20 20 C 1.54268 * 110.48863 * 60.62646 * 19 9 7 21 21 C 1.53875 * 106.59908 * 217.71506 * 20 19 9 22 22 C 1.54260 * 106.59898 * 359.97438 * 21 20 19 23 23 C 1.54892 * 104.19806 * 23.61552 * 22 21 20 24 24 H 0.97004 * 120.00129 * 0.02562 * 1 2 3 25 25 H 1.08994 * 117.46498 * 356.28286 * 13 12 10 26 26 H 1.09003 * 117.45943 * 141.09224 * 13 12 10 27 27 H 1.08997 * 110.48550 * 206.46413 * 16 14 13 28 28 H 1.08996 * 110.48396 * 328.97991 * 16 14 13 29 29 H 1.09006 * 110.75383 * 80.36920 * 17 16 14 30 30 H 1.08999 * 110.75365 * 203.55871 * 17 16 14 31 31 H 1.09004 * 110.48780 * 235.04599 * 18 12 10 32 32 H 1.08996 * 110.49482 * 357.69771 * 18 12 10 33 33 H 1.09002 * 110.54365 * 183.23747 * 19 9 7 34 34 H 1.08998 * 110.03280 * 98.42861 * 20 19 9 35 35 H 1.08999 * 110.02917 * 336.99613 * 20 19 9 36 36 H 1.09000 * 110.03586 * 119.28176 * 21 20 19 37 37 H 1.09006 * 110.03058 * 240.66340 * 21 20 19 38 38 H 1.08998 * 110.48692 * 142.29175 * 22 21 20 39 39 H 1.08999 * 110.49373 * 264.93157 * 22 21 20 40 40 H 1.08997 * 110.75559 * 80.36535 * 23 22 21 41 41 H 1.09001 * 110.75592 * 203.74488 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0278 -1.2388 -0.3557 9 7 1.4009 -2.3457 0.4533 10 6 0.6194 -2.3037 1.5506 11 8 0.3995 -1.2439 2.0983 12 6 0.0188 -3.5732 2.0971 13 6 -1.4556 -3.8802 1.8279 14 6 -1.0003 -3.5448 3.2496 15 1 -1.3099 -2.6062 3.7094 16 6 -0.6331 -4.7101 4.1914 17 6 0.8680 -4.9676 3.9096 18 6 0.9786 -4.7457 2.3862 19 6 1.6006 -3.6120 -0.2556 20 6 3.0944 -3.9971 -0.2626 21 6 3.3804 -4.6239 -1.6386 22 6 2.0502 -4.5984 -2.4194 23 6 1.2409 -3.4575 -1.7541 24 1 -0.4850 0.8401 -0.0004 25 1 -2.0368 -3.1274 1.2955 26 1 -1.7231 -4.9157 1.6169 27 1 -0.7818 -4.4210 5.2318 28 1 -1.2250 -5.5938 3.9535 29 1 1.4900 -4.2479 4.4419 30 1 1.1423 -5.9874 4.1797 31 1 0.6537 -5.6434 1.8602 32 1 1.9977 -4.4837 2.1020 33 1 1.0049 -4.4033 0.1996 34 1 3.2972 -4.7209 0.5268 35 1 3.7097 -3.1084 -0.1220 36 1 4.1344 -4.0394 -2.1657 37 1 3.7227 -5.6516 -1.5168 38 1 2.2295 -4.3756 -3.4712 39 1 1.5274 -5.5489 -2.3136 40 1 1.5621 -2.4861 -2.1299 41 1 0.1718 -3.5998 -1.9114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335534558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:25 Heat of formation + Delta-G solvation = -8.270192 kcal Electronic energy + Delta-G solvation = -21475.343412 eV Core-core repulsion = 18548.737161 eV Total energy + Delta-G solvation = -2926.606251 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79419 -37.84975 -36.27312 -33.23159 -31.49905 -31.14293 -28.27130 -27.94186 -26.70905 -24.87630 -22.45816 -21.16694 -20.09915 -19.79201 -19.50842 -18.31574 -16.36809 -15.95753 -15.08488 -14.78005 -14.60110 -13.95941 -13.94184 -13.29192 -13.07802 -12.69896 -12.65309 -12.52685 -12.30826 -11.56600 -11.26800 -11.06200 -10.85079 -10.77179 -10.73333 -10.65688 -10.55907 -10.48639 -10.44477 -10.39927 -10.11731 -9.92130 -9.68919 -9.60705 -9.01621 -8.64054 -7.86508 -6.96133 -6.01676 -3.71781 3.35014 3.45195 3.47656 3.94378 4.32132 4.53811 4.84537 5.02087 5.14130 5.20476 5.28530 5.28973 5.38109 5.51612 5.67270 5.78798 5.86640 5.88730 5.95015 6.02285 6.05550 6.11444 6.14949 6.15598 6.22079 6.26753 6.28917 6.37846 6.45810 6.47225 6.47663 6.63082 6.69022 6.72790 6.82064 6.91275 7.00720 7.24431 7.72665 8.37917 9.18625 9.32117 9.81094 10.46474 11.06905 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.010063 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.275908 B = 2781.752460 C = 3997.201734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.346 4.346 8 H 0.077 0.923 9 N -0.441 5.441 10 C 0.511 3.489 11 O -0.534 6.534 12 C -0.152 4.152 13 C -0.132 4.132 14 C -0.145 4.145 15 H 0.112 0.888 16 C -0.092 4.092 17 C -0.123 4.123 18 C -0.086 4.086 19 C 0.130 3.870 20 C -0.136 4.136 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.122 4.122 24 H 0.261 0.739 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 -11.888 0.861 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.136 4.136 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.473 4.473 8 H 0.095 0.905 9 N -0.161 5.161 10 C 0.298 3.702 11 O -0.412 6.412 12 C -0.156 4.156 13 C -0.169 4.169 14 C -0.164 4.164 15 H 0.130 0.870 16 C -0.129 4.129 17 C -0.161 4.161 18 C -0.123 4.123 19 C 0.025 3.975 20 C -0.175 4.175 21 C -0.156 4.156 22 C -0.162 4.162 23 C -0.160 4.160 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.023 -11.199 1.161 11.306 hybrid contribution 0.331 0.856 -0.125 0.926 sum 1.354 -10.344 1.036 10.483 Atomic orbital electron populations 1.69904 1.06592 1.26993 1.42184 1.25093 0.94563 0.99093 0.94873 0.86388 0.80035 0.83187 0.77444 1.21098 1.21161 1.19790 1.18781 0.96324 0.85185 1.47003 0.90487 1.43139 1.45149 1.06164 1.21644 1.18718 0.83019 0.87119 0.81372 1.90520 1.60311 1.30617 1.59732 1.22491 0.90574 0.97691 1.04799 1.22974 0.95049 1.01455 0.97451 1.23175 1.03945 1.00013 0.89273 0.87039 1.21928 0.95788 0.96727 0.98493 1.22591 0.96397 1.00654 0.96419 1.21941 0.99322 0.95677 0.95381 1.21927 0.94274 0.88629 0.92664 1.22527 0.98682 1.00481 0.95799 1.22038 0.97530 0.99537 0.96463 1.22315 0.96295 0.98833 0.98772 1.22704 0.98633 0.99080 0.95609 0.92926 0.88217 0.89513 0.91667 0.91833 0.91455 0.91785 0.91882 0.90521 0.90436 0.92926 0.90602 0.92357 0.92894 0.92443 0.92537 0.89614 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.64 11.62 55.50 0.64 -24.00 16 2 C 0.07 2.12 4.25 -17.47 -0.07 2.04 16 3 Si 0.90 22.30 29.61 -169.99 -5.03 17.26 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.35 -9.43 7.51 -14.93 -0.11 -9.55 16 8 H 0.08 2.04 6.86 -52.49 -0.36 1.68 16 9 N -0.44 -10.94 2.56 -105.98 -0.27 -11.21 16 10 C 0.51 13.18 6.63 -10.99 -0.07 13.11 16 11 O -0.53 -16.18 14.19 5.54 0.08 -16.10 16 12 C -0.15 -3.04 1.61 -154.55 -0.25 -3.29 16 13 C -0.13 -2.37 9.87 -26.73 -0.26 -2.64 16 14 C -0.15 -2.63 6.55 -89.50 -0.59 -3.22 16 15 H 0.11 2.24 8.14 -51.93 -0.42 1.81 16 16 C -0.09 -1.30 6.63 -25.07 -0.17 -1.47 16 17 C -0.12 -1.75 6.88 -25.03 -0.17 -1.92 16 18 C -0.09 -1.39 4.58 -25.37 -0.12 -1.51 16 19 C 0.13 2.59 2.27 -66.28 -0.15 2.44 16 20 C -0.14 -2.37 6.11 -25.61 -0.16 -2.52 16 21 C -0.12 -1.72 6.80 -25.62 -0.17 -1.90 16 22 C -0.12 -1.85 6.83 -25.07 -0.17 -2.02 16 23 C -0.12 -2.33 6.40 -24.75 -0.16 -2.49 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 26 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.90 7.93 -51.93 -0.41 0.49 16 32 H 0.08 1.32 5.80 -51.93 -0.30 1.02 16 33 H 0.08 1.45 4.86 -51.93 -0.25 1.19 16 34 H 0.05 0.82 7.11 -51.93 -0.37 0.45 16 35 H 0.08 1.48 6.53 -51.93 -0.34 1.14 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.88 7.12 -51.93 -0.37 1.51 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -31.95 314.45 -9.08 -41.03 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.61 Total: 3.21 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.62 Total: -14.92 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.37 Total: -35.21 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.08 Total: -16.10 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.95 -9.08 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335534558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.757 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds