Wall clock time and date at job start Sun Mar 29 2020 23:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 120.00370 * 2 1 4 4 H 1.48501 * 109.47178 * 87.03191 * 3 2 1 5 5 H 1.48500 * 109.47160 * 207.03399 * 3 2 1 6 6 H 1.48500 * 109.47299 * 327.03652 * 3 2 1 7 7 C 1.38951 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00148 * 343.09505 * 7 2 1 9 9 N 1.37100 * 119.99739 * 163.10171 * 7 2 1 10 10 C 1.34771 * 119.99704 * 306.28729 * 9 7 2 11 11 O 1.21294 * 119.99840 * 175.23182 * 10 9 7 12 12 C 1.50695 * 120.00432 * 355.22853 * 10 9 7 13 13 C 1.52999 * 119.29795 * 105.32192 * 12 10 9 14 14 C 1.53001 * 60.37724 * 111.30818 * 13 12 10 15 15 H 1.09003 * 119.30168 * 248.69457 * 14 13 12 16 16 C 1.54273 * 118.19588 * 93.61685 * 14 13 12 17 17 C 1.54890 * 104.19206 * 272.21082 * 16 14 13 18 18 C 1.54261 * 117.41340 * 309.67039 * 12 10 9 19 19 C 1.46500 * 120.00022 * 126.29242 * 9 7 2 20 20 C 1.54266 * 110.03547 * 57.90158 * 19 9 7 21 21 C 1.54965 * 104.16400 * 217.13912 * 20 19 9 22 22 C 1.54889 * 102.77629 * 37.88805 * 21 20 19 23 23 C 1.53880 * 110.03158 * 300.68682 * 19 9 7 24 24 H 0.97003 * 119.99342 * 0.02562 * 1 2 3 25 25 H 1.08999 * 117.45975 * 218.90619 * 13 12 10 26 26 H 1.09001 * 117.45847 * 3.71560 * 13 12 10 27 27 H 1.09000 * 110.48625 * 30.88864 * 16 14 13 28 28 H 1.08996 * 110.48375 * 153.40038 * 16 14 13 29 29 H 1.09005 * 110.75192 * 156.25947 * 17 16 14 30 30 H 1.09003 * 110.75904 * 279.43831 * 17 16 14 31 31 H 1.09003 * 110.49038 * 2.30787 * 18 12 10 32 32 H 1.09001 * 110.48706 * 124.94777 * 18 12 10 33 33 H 1.09000 * 110.01982 * 179.29530 * 19 9 7 34 34 H 1.09006 * 110.48886 * 335.78958 * 20 19 9 35 35 H 1.09000 * 110.48259 * 98.42334 * 20 19 9 36 36 H 1.08998 * 110.71312 * 279.57154 * 21 20 19 37 37 H 1.09004 * 110.92203 * 156.29931 * 21 20 19 38 38 H 1.08997 * 110.48518 * 203.40893 * 22 21 20 39 39 H 1.08997 * 110.59896 * 80.81995 * 22 21 20 40 40 H 1.08998 * 110.03317 * 238.56797 * 23 19 9 41 41 H 1.08995 * 110.02976 * 359.95090 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4330 2.0826 1.3982 5 1 3.5757 1.4227 -0.6364 6 1 1.4785 2.6338 -0.7618 7 6 2.0088 -1.2034 0.0005 8 1 1.5038 -2.1183 0.2729 9 7 3.3354 -1.2292 -0.3446 10 6 3.7376 -0.6957 -1.5150 11 8 4.9196 -0.6405 -1.7820 12 6 2.7191 -0.1679 -2.4922 13 6 2.5428 1.3440 -2.6463 14 6 3.1469 0.5322 -3.7939 15 1 4.1989 0.6662 -4.0461 16 6 2.2022 0.0201 -4.9008 17 6 1.7005 -1.3457 -4.3699 18 6 1.5387 -1.0920 -2.8563 19 6 4.3156 -1.8368 0.5589 20 6 3.9419 -3.3084 0.8318 21 6 4.3117 -3.5236 2.3212 22 6 3.9095 -2.1768 2.9721 23 6 4.2955 -1.1175 1.9191 24 1 -0.4849 0.8401 -0.0004 25 1 1.5284 1.7211 -2.7769 26 1 3.2140 1.9888 -2.0790 27 1 1.3667 0.7067 -5.0371 28 1 2.7457 -0.1085 -5.8368 29 1 0.7465 -1.6105 -4.8259 30 1 2.4414 -2.1252 -4.5478 31 1 1.5969 -2.0245 -2.2948 32 1 0.5895 -0.5906 -2.6676 33 1 5.3122 -1.7797 0.1211 34 1 2.8743 -3.4658 0.6774 35 1 4.5228 -3.9742 0.1936 36 1 5.3814 -3.7015 2.4310 37 1 3.7388 -4.3461 2.7496 38 1 4.4668 -2.0178 3.8952 39 1 2.8371 -2.1495 3.1654 40 1 5.2825 -0.7122 2.1418 41 1 3.5571 -0.3160 1.9067 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335534563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:27 Heat of formation + Delta-G solvation = 0.528473 kcal Electronic energy + Delta-G solvation = -21781.900282 eV Core-core repulsion = 18855.675571 eV Total energy + Delta-G solvation = -2926.224712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02321 -38.16602 -36.32637 -34.10366 -31.74819 -31.18783 -28.18213 -28.07750 -26.81676 -24.58404 -22.83213 -21.55096 -20.22595 -19.96015 -19.10042 -18.44849 -16.72573 -15.93632 -15.71648 -14.82861 -14.62531 -14.32638 -14.04937 -13.43551 -13.28172 -12.91277 -12.72459 -12.45454 -12.20780 -11.94591 -11.35860 -11.12709 -10.94159 -10.90956 -10.73772 -10.56475 -10.51552 -10.49338 -10.28818 -10.24801 -9.96738 -9.83707 -9.68909 -9.35980 -8.93713 -8.74845 -8.50379 -7.47464 -6.41022 -4.17354 3.09966 3.25461 3.33824 3.66002 4.17507 4.25309 4.49187 4.95823 5.08547 5.23781 5.29358 5.30639 5.44689 5.52237 5.75477 5.88674 5.94762 6.00869 6.07851 6.14395 6.16048 6.16513 6.22055 6.24850 6.27648 6.32164 6.36887 6.42123 6.45612 6.50044 6.60583 6.75796 6.81395 6.87155 6.94586 7.02587 7.09845 7.20952 7.76619 7.83691 8.51326 9.06290 9.35183 9.78624 10.66893 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.009466 C = 0.008362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.837442 B = 2957.240736 C = 3347.511279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.088 3.912 3 Si 0.870 3.130 4 H -0.293 1.293 5 H -0.256 1.256 6 H -0.284 1.284 7 C -0.333 4.333 8 H 0.098 0.902 9 N -0.464 5.464 10 C 0.533 3.467 11 O -0.598 6.598 12 C -0.113 4.113 13 C -0.174 4.174 14 C -0.147 4.147 15 H 0.110 0.890 16 C -0.091 4.091 17 C -0.129 4.129 18 C -0.061 4.061 19 C 0.131 3.869 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.128 4.128 24 H 0.273 0.727 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -2.078 -1.748 3.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.120 4.120 3 Si 0.700 3.300 4 H -0.221 1.221 5 H -0.181 1.181 6 H -0.210 1.210 7 C -0.460 4.460 8 H 0.115 0.885 9 N -0.184 5.184 10 C 0.323 3.677 11 O -0.483 6.483 12 C -0.115 4.115 13 C -0.211 4.211 14 C -0.166 4.166 15 H 0.128 0.872 16 C -0.128 4.128 17 C -0.166 4.166 18 C -0.099 4.099 19 C 0.027 3.973 20 C -0.165 4.165 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.166 4.166 24 H 0.083 0.917 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.986 -1.988 -1.866 4.043 hybrid contribution 0.253 1.167 0.247 1.220 sum 3.239 -0.821 -1.619 3.713 Atomic orbital electron populations 1.69708 1.06071 1.27844 1.45850 1.25499 0.94948 0.97931 0.93574 0.87214 0.81793 0.84385 0.76628 1.22143 1.18091 1.21050 1.18720 0.82547 0.95358 1.49395 0.88491 1.43700 1.07463 1.53393 1.13835 1.19418 0.87344 0.79321 0.81594 1.90507 1.18261 1.61550 1.77950 1.21889 0.99011 0.92951 0.97693 1.23570 1.02202 0.93566 1.01746 1.23266 0.99682 1.04004 0.89617 0.87205 1.21924 0.97681 0.96742 0.96491 1.22679 1.00160 0.96673 0.97097 1.21632 0.95945 0.99633 0.92697 1.21661 0.93585 0.91990 0.90098 1.22653 1.02668 0.96056 0.95156 1.22425 1.00035 0.97296 0.96059 1.22251 1.01353 0.94668 0.97096 1.22392 1.00578 0.99024 0.94623 0.91708 0.88467 0.88056 0.91771 0.91850 0.91809 0.92022 0.89718 0.90624 0.90119 0.89979 0.92690 0.92325 0.92159 0.92826 0.91214 0.92970 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.44 13.96 55.50 0.77 -21.66 16 2 C 0.09 2.23 3.92 -17.47 -0.07 2.16 16 3 Si 0.87 21.01 20.70 -169.99 -3.52 17.49 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 5 H -0.26 -6.42 4.22 56.52 0.24 -6.18 16 6 H -0.28 -6.66 6.74 56.52 0.38 -6.28 16 7 C -0.33 -8.19 5.91 -14.93 -0.09 -8.28 16 8 H 0.10 2.53 6.92 -52.49 -0.36 2.17 16 9 N -0.46 -10.95 1.87 -106.54 -0.20 -11.14 16 10 C 0.53 13.14 4.90 -10.99 -0.05 13.09 16 11 O -0.60 -15.94 16.15 5.55 0.09 -15.85 16 12 C -0.11 -2.49 1.01 -154.55 -0.16 -2.64 16 13 C -0.17 -3.67 6.01 -26.73 -0.16 -3.83 16 14 C -0.15 -2.86 6.55 -89.50 -0.59 -3.44 16 15 H 0.11 2.16 8.14 -51.93 -0.42 1.74 16 16 C -0.09 -1.46 6.63 -25.07 -0.17 -1.63 16 17 C -0.13 -2.15 6.88 -25.04 -0.17 -2.32 16 18 C -0.06 -1.26 4.81 -25.38 -0.12 -1.38 16 19 C 0.13 2.74 3.29 -66.81 -0.22 2.52 16 20 C -0.13 -2.30 6.42 -25.03 -0.16 -2.46 16 21 C -0.12 -1.83 6.91 -24.70 -0.17 -2.00 16 22 C -0.12 -1.91 6.83 -25.07 -0.17 -2.08 16 23 C -0.13 -2.49 6.27 -25.61 -0.16 -2.65 16 24 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.10 1.98 7.73 -51.93 -0.40 1.58 16 26 H 0.10 2.24 5.01 -51.93 -0.26 1.98 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.86 6.89 -51.93 -0.36 1.51 16 32 H 0.08 1.64 8.03 -51.93 -0.42 1.22 16 33 H 0.08 1.77 6.96 -51.93 -0.36 1.41 16 34 H 0.08 1.60 6.39 -51.93 -0.33 1.27 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.65 5.97 -51.93 -0.31 1.34 16 LS Contribution 298.83 15.07 4.50 4.50 Total: -1.00 -27.58 298.83 -7.58 -35.15 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.77 Total: 6.45 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -2.46 Total: -14.94 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.58 Total: -32.81 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.09 Total: -15.85 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -3.52 Total: 17.49 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.58 -7.58 -35.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335534563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.682 kcal (2) G-P(sol) polarization free energy of solvation -27.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds