Wall clock time and date at job start Sun Mar 29 2020 23:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00100 * 2 1 4 4 H 1.48505 * 109.46949 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47332 * 119.99776 * 3 2 1 6 6 H 1.48502 * 109.47331 * 240.00196 * 3 2 1 7 7 C 1.37881 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99847 * 172.57485 * 7 2 1 9 9 C 1.50697 * 120.00074 * 352.57915 * 7 2 1 10 10 C 1.53034 * 109.46119 * 209.17679 * 9 7 2 11 11 C 1.53198 * 109.31195 * 178.61192 * 10 9 7 12 12 N 1.46931 * 108.77215 * 54.64289 * 11 10 9 13 13 C 1.34767 * 120.63001 * 126.41302 * 12 11 10 14 14 O 1.21285 * 120.00215 * 179.97438 * 13 12 11 15 15 C 1.50699 * 120.00459 * 359.97438 * 13 12 11 16 16 H 1.09001 * 115.54747 * 325.71493 * 15 13 12 17 17 C 1.52997 * 117.50443 * 111.39174 * 15 13 12 18 18 C 1.53001 * 117.50015 * 180.02562 * 15 13 12 19 19 H 1.09004 * 117.49958 * 145.02070 * 18 15 13 20 20 C 1.52998 * 117.50128 * 359.97438 * 18 15 13 21 21 C 1.52997 * 117.49890 * 128.74852 * 20 18 15 22 22 C 1.53001 * 117.49690 * 60.08959 * 20 18 15 23 23 C 1.46925 * 118.73332 * 306.38549 * 12 11 10 24 24 C 1.53044 * 109.45911 * 89.11137 * 9 7 2 25 25 H 0.97002 * 119.99790 * 174.51472 * 1 2 3 26 26 H 1.09000 * 109.45869 * 329.14268 * 9 7 2 27 27 H 1.08996 * 109.50218 * 298.56478 * 10 9 7 28 28 H 1.09003 * 109.49736 * 58.66927 * 10 9 7 29 29 H 1.08994 * 109.58795 * 294.84803 * 11 10 9 30 30 H 1.09002 * 109.58220 * 174.42440 * 11 10 9 31 31 H 1.08997 * 117.50003 * 214.98092 * 17 15 13 32 32 H 1.09004 * 117.49475 * 359.97438 * 17 15 13 33 33 H 1.09003 * 115.55099 * 274.42374 * 20 18 15 34 34 H 1.08998 * 117.49755 * 0.02562 * 21 20 18 35 35 H 1.08995 * 117.49677 * 145.02186 * 21 20 18 36 36 H 1.09000 * 117.50072 * 214.98185 * 22 20 18 37 37 H 1.08998 * 117.49932 * 0.02562 * 22 20 18 38 38 H 1.08995 * 109.59053 * 293.81892 * 23 12 11 39 39 H 1.09007 * 109.58217 * 173.40238 * 23 12 11 40 40 H 1.09000 * 109.49963 * 301.33755 * 24 9 7 41 41 H 1.09003 * 109.49826 * 61.39986 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0777 -1.1979 -0.1214 9 6 1.2605 -2.4938 0.1674 10 6 2.1740 -3.5209 0.8402 11 6 1.4035 -4.8297 1.0407 12 7 0.8605 -5.2619 -0.2544 13 6 1.1077 -6.5008 -0.7236 14 8 0.6534 -6.8459 -1.7939 15 6 1.9487 -7.4577 0.0816 16 1 2.7563 -7.0045 0.6564 17 6 1.2491 -8.6768 0.6859 18 6 2.1936 -8.8492 -0.5056 19 1 3.1625 -9.3117 -0.3169 20 6 1.5655 -9.1630 -1.8649 21 6 2.4806 -9.7304 -2.9519 22 6 1.9761 -8.2887 -3.0515 23 6 0.0424 -4.3178 -1.0278 24 6 0.8282 -3.0148 -1.2051 25 1 -0.4850 -0.8362 -0.0803 26 1 0.3794 -2.3302 0.7878 27 1 3.0433 -3.7036 0.2086 28 1 2.5003 -3.1391 1.8076 29 1 0.5866 -4.6688 1.7441 30 1 2.0768 -5.5944 1.4281 31 1 1.5966 -9.0258 1.6583 32 1 0.1804 -8.7865 0.5015 33 1 0.5364 -9.5211 -1.8359 34 1 3.5300 -9.8806 -2.6983 35 1 2.0535 -10.4616 -3.6381 36 1 1.2172 -8.0719 -3.8034 37 1 2.6939 -7.4902 -2.8638 38 1 -0.8855 -4.1152 -0.4932 39 1 -0.1825 -4.7448 -2.0052 40 1 0.1966 -2.2727 -1.6935 41 1 1.7102 -3.2017 -1.8177 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335823964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:33 Heat of formation + Delta-G solvation = -7.066614 kcal Electronic energy + Delta-G solvation = -20428.007039 eV Core-core repulsion = 17501.452980 eV Total energy + Delta-G solvation = -2926.554059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.48405 -39.40141 -37.80807 -36.01436 -35.47868 -32.80850 -32.06034 -27.85952 -26.05561 -24.67751 -24.27440 -23.60943 -23.12661 -21.73286 -21.00522 -19.47117 -18.97277 -18.09930 -16.84353 -16.56531 -16.08277 -15.73098 -15.68790 -15.60051 -14.97121 -14.74182 -14.47007 -14.19238 -13.86394 -13.43194 -13.23421 -12.99183 -12.63749 -12.61462 -12.35671 -12.22683 -12.16306 -11.96332 -11.92810 -11.76568 -11.49921 -11.25337 -10.89781 -10.69795 -10.58617 -10.41292 -10.01572 -9.50162 -8.57993 -6.29942 1.53511 1.57422 1.60097 1.79440 2.04168 2.58288 2.72275 3.14567 3.19381 3.48748 3.75761 3.88253 3.97302 4.04225 4.19172 4.23720 4.26567 4.29815 4.30860 4.44163 4.47364 4.57739 4.59864 4.76495 4.80444 4.85020 4.87218 4.96783 4.98698 5.05642 5.13880 5.15641 5.25945 5.33830 5.39976 5.45768 5.57341 5.73824 6.12332 6.25929 6.54049 6.67519 7.27446 7.49091 8.80195 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037612 B = 0.004378 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.268766 B = 6394.763956 C = 6575.956443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.029 4.029 3 Si 1.108 2.892 4 H -0.287 1.287 5 H -0.269 1.269 6 H -0.276 1.276 7 C -0.606 4.606 8 H 0.041 0.959 9 C 0.026 3.974 10 C -0.111 4.111 11 C 0.113 3.887 12 N -0.605 5.605 13 C 0.529 3.471 14 O -0.560 6.560 15 C -0.200 4.200 16 H 0.142 0.858 17 C -0.127 4.127 18 C -0.090 4.090 19 H 0.137 0.863 20 C -0.113 4.113 21 C -0.178 4.178 22 C -0.138 4.138 23 C 0.121 3.879 24 C -0.108 4.108 25 H 0.260 0.740 26 H 0.009 0.991 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.205 -18.568 2.518 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.227 4.227 3 Si 0.930 3.070 4 H -0.212 1.212 5 H -0.194 1.194 6 H -0.202 1.202 7 C -0.644 4.644 8 H 0.060 0.940 9 C 0.007 3.993 10 C -0.150 4.150 11 C -0.009 4.009 12 N -0.338 5.338 13 C 0.319 3.681 14 O -0.439 6.439 15 C -0.220 4.220 16 H 0.159 0.841 17 C -0.164 4.164 18 C -0.108 4.108 19 H 0.154 0.846 20 C -0.131 4.131 21 C -0.214 4.214 22 C -0.175 4.175 23 C -0.002 4.002 24 C -0.146 4.146 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.763 -17.105 2.034 17.872 hybrid contribution -0.221 -0.840 -0.440 0.974 sum 4.542 -17.945 1.594 18.579 Atomic orbital electron populations 1.70906 1.07844 1.30334 1.48405 1.27115 0.96554 1.06116 0.92914 0.83052 0.74242 0.71946 0.77734 1.21222 1.19429 1.20185 1.22322 0.94698 0.93540 1.53865 0.94046 1.18844 0.94858 0.93675 0.91953 1.21818 0.98012 0.94542 1.00584 1.21940 0.98306 0.96984 0.83700 1.48187 1.51330 1.12846 1.21391 1.20315 0.80473 0.81680 0.85619 1.90696 1.53374 1.76632 1.23225 1.22333 1.03841 0.90189 1.05683 0.84065 1.23118 0.98453 0.96101 0.98719 1.21952 1.01159 0.95026 0.92696 0.84561 1.21486 0.98052 1.04329 0.89249 1.23307 0.99839 0.96595 1.01699 1.22332 1.01813 0.92754 1.00648 1.21446 0.93203 0.89235 0.96316 1.21885 0.98028 0.94563 1.00172 0.93023 0.97253 0.93546 0.91266 0.91352 0.86789 0.84521 0.89420 0.89307 0.87799 0.88344 0.91224 0.91608 0.92292 0.90804 0.94577 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.43 13.55 21.45 0.29 -56.14 16 2 C -0.03 -1.61 5.44 84.66 0.46 -1.15 16 3 Si 1.11 49.77 29.91 68.60 2.05 51.82 16 4 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.61 -33.30 8.30 25.60 0.21 -33.08 16 8 H 0.04 2.27 7.82 -2.91 -0.02 2.25 16 9 C 0.03 1.23 1.70 -11.51 -0.02 1.21 16 10 C -0.11 -4.22 5.34 30.67 0.16 -4.06 16 11 C 0.11 3.36 6.35 86.36 0.55 3.91 16 12 N -0.61 -20.42 2.97 -818.90 -2.43 -22.85 16 13 C 0.53 16.76 7.32 87.66 0.64 17.40 16 14 O -0.56 -20.57 10.95 -3.05 -0.03 -20.60 16 15 C -0.20 -4.43 5.11 -11.54 -0.06 -4.49 16 16 H 0.14 2.59 6.56 -2.39 -0.02 2.57 16 17 C -0.13 -2.15 9.95 30.60 0.30 -1.85 16 18 C -0.09 -1.74 5.87 -10.79 -0.06 -1.80 16 19 H 0.14 1.97 8.14 -2.38 -0.02 1.95 16 20 C -0.11 -2.68 4.47 -10.79 -0.05 -2.72 16 21 C -0.18 -3.61 10.25 30.62 0.31 -3.30 16 22 C -0.14 -3.84 7.09 30.62 0.22 -3.63 16 23 C 0.12 4.72 6.43 86.36 0.56 5.27 16 24 C -0.11 -4.93 5.25 30.67 0.16 -4.77 16 25 H 0.26 15.67 6.42 -92.71 -0.59 15.08 16 26 H 0.01 0.49 6.98 -2.39 -0.02 0.47 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.11 2.50 5.51 -2.39 -0.01 2.49 16 31 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 36 H 0.07 2.16 8.06 -2.39 -0.02 2.14 16 37 H 0.07 2.04 7.97 -2.39 -0.02 2.02 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.93 7.01 -2.38 -0.02 2.92 16 40 H 0.04 1.81 7.72 -2.39 -0.02 1.79 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -66.31 321.19 4.43 -61.88 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 1.17 Total: 18.96 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 3.39 Total: -33.06 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.14 Total: -78.99 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.03 Total: -20.60 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.05 Total: 51.82 kcal Total: -66.31 4.43 -61.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335823964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.813 kcal (2) G-P(sol) polarization free energy of solvation -66.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds