Wall clock time and date at job start Mon Mar 30 2020 00:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32620 * 124.61744 * 2 1 4 4 C 1.47096 * 124.61730 * 359.97438 * 3 2 1 5 5 O 1.21610 * 120.00239 * 25.00921 * 4 3 2 6 6 N 1.34782 * 119.99461 * 205.00655 * 4 3 2 7 7 C 1.46930 * 120.62835 * 173.49026 * 6 4 3 8 8 C 1.53189 * 108.89397 * 233.51384 * 7 6 4 9 9 C 1.53072 * 109.29756 * 305.58335 * 8 7 6 10 10 C 1.50695 * 109.44483 * 181.23257 * 9 8 7 11 11 H 1.07995 * 120.00334 * 239.79380 * 10 9 8 12 12 C 1.37881 * 119.99775 * 59.79090 * 10 9 8 13 13 N 1.31518 * 120.00132 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99996 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47171 * 90.00129 * 14 12 10 16 16 H 1.48506 * 109.47089 * 210.00303 * 14 12 10 17 17 H 1.48493 * 109.47142 * 329.99864 * 14 12 10 18 18 C 1.53043 * 109.65950 * 61.14775 * 9 8 7 19 19 C 1.46917 * 120.63372 * 353.46719 * 6 4 3 20 20 C 1.51113 * 110.75644 * 180.24744 * 3 2 1 21 21 C 1.54756 * 104.75191 * 343.01000 * 20 3 2 22 22 C 1.51114 * 124.62432 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.47288 * 89.99653 * 1 2 3 24 24 H 1.09000 * 109.46759 * 209.99236 * 1 2 3 25 25 H 1.08994 * 109.46856 * 329.99348 * 1 2 3 26 26 H 1.08999 * 109.58441 * 353.37626 * 7 6 4 27 27 H 1.08998 * 109.58670 * 113.65387 * 7 6 4 28 28 H 1.09005 * 109.49358 * 65.38998 * 8 7 6 29 29 H 1.08994 * 109.49772 * 185.48178 * 8 7 6 30 30 H 1.09004 * 109.33918 * 301.12688 * 9 8 7 31 31 H 0.96996 * 120.00508 * 179.97438 * 13 12 10 32 32 H 1.09004 * 109.49613 * 178.75618 * 18 9 8 33 33 H 1.08995 * 109.52313 * 58.67642 * 18 9 8 34 34 H 1.09006 * 109.59093 * 246.20352 * 19 6 4 35 35 H 1.09000 * 109.58613 * 6.48450 * 19 6 4 36 36 H 1.09001 * 110.36581 * 101.97941 * 20 3 2 37 37 H 1.08997 * 110.36085 * 224.30102 * 20 3 2 38 38 H 1.09005 * 111.21306 * 267.22074 * 21 20 3 39 39 H 1.08994 * 110.86847 * 143.38305 * 21 20 3 40 40 H 1.09001 * 110.36277 * 315.45886 * 22 2 1 41 41 H 1.09003 * 110.36103 * 77.66735 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.0914 0.0000 4 6 1.7389 2.4668 -0.0005 5 8 0.6308 2.6972 0.4442 6 7 2.4894 3.4718 -0.4940 7 6 1.9316 4.8240 -0.6330 8 6 2.1340 5.2981 -2.0755 9 6 3.6159 5.1855 -2.4419 10 6 3.8235 5.6796 -3.8503 11 1 4.2319 5.0182 -4.6000 12 6 3.4919 6.9762 -4.1819 13 7 2.9950 7.7819 -3.2689 14 14 3.7485 7.5886 -5.9279 15 1 2.5230 7.3341 -6.7269 16 1 4.0305 9.0464 -5.9048 17 1 4.8961 6.8721 -6.5401 18 6 4.0611 3.7246 -2.3433 19 6 3.8808 3.2362 -0.9025 20 6 3.7276 0.7294 -0.0061 21 6 3.7688 -0.7556 0.4274 22 6 2.3657 -1.2435 0.0006 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8901 0.5137 25 1 -0.3633 0.8899 0.5139 26 1 0.8669 4.8057 -0.4003 27 1 2.4433 5.5023 0.0498 28 1 1.5463 4.6745 -2.7493 29 1 1.8123 6.3356 -2.1660 30 1 4.2050 5.7919 -1.7537 31 1 2.7621 8.6942 -3.5020 32 1 5.1108 3.6443 -2.6259 33 1 3.4562 3.1135 -3.0131 34 1 4.5533 3.7855 -0.2436 35 1 4.1030 2.1706 -0.8453 36 1 4.1431 0.8469 -1.0069 37 1 4.2735 1.3468 0.7072 38 1 3.9030 -0.8483 1.5052 39 1 4.5495 -1.2951 -0.1088 40 1 1.9818 -1.9691 0.7177 41 1 2.4015 -1.6801 -0.9976 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336034250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:34 Heat of formation + Delta-G solvation = -32.629647 kcal Electronic energy + Delta-G solvation = -20571.992119 eV Core-core repulsion = 17644.329563 eV Total energy + Delta-G solvation = -2927.662556 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.54212 -39.14585 -38.25662 -35.43379 -33.03235 -32.41494 -31.98189 -29.67382 -28.14036 -26.72794 -24.96562 -24.00851 -22.42119 -21.90398 -20.47935 -18.78600 -18.42099 -17.35291 -16.86459 -16.54330 -16.50675 -15.80676 -15.38823 -14.94271 -14.69804 -14.51670 -14.23116 -14.10249 -13.80042 -13.72252 -13.37664 -13.08501 -13.05018 -12.82101 -12.53972 -12.46565 -12.27550 -12.12584 -11.97802 -11.85518 -11.69567 -11.44447 -10.89112 -10.86580 -10.53823 -10.38944 -9.76349 -9.38889 -8.08662 -6.23353 0.45500 1.40664 1.41931 1.51466 2.04111 2.28477 2.43035 3.17633 3.47186 3.66132 3.86038 4.06836 4.20729 4.24240 4.31082 4.35667 4.47936 4.52640 4.61895 4.66252 4.69799 4.78943 4.85768 4.88976 4.95306 4.99129 5.03231 5.10287 5.17064 5.23827 5.24971 5.39747 5.42550 5.51974 5.57070 5.64787 5.71357 5.95215 6.08629 6.36236 6.57994 6.88303 7.20524 7.45072 8.94870 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031481 B = 0.004878 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.215713 B = 5739.162655 C = 6070.717058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.046 4.046 3 C -0.227 4.227 4 C 0.554 3.446 5 O -0.593 6.593 6 N -0.597 5.597 7 C 0.119 3.881 8 C -0.109 4.109 9 C 0.044 3.956 10 C -0.532 4.532 11 H 0.054 0.946 12 C 0.012 3.988 13 N -0.918 5.918 14 Si 0.953 3.047 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.115 4.115 19 C 0.065 3.935 20 C -0.092 4.092 21 C -0.115 4.115 22 C -0.094 4.094 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.020 0.980 29 H 0.073 0.927 30 H 0.000 1.000 31 H 0.260 0.740 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.149 0.851 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -18.483 6.584 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.048 4.048 3 C -0.229 4.229 4 C 0.346 3.654 5 O -0.476 6.476 6 N -0.328 5.328 7 C -0.003 4.003 8 C -0.148 4.148 9 C 0.025 3.975 10 C -0.570 4.570 11 H 0.073 0.927 12 C -0.187 4.187 13 N -0.557 5.557 14 Si 0.779 3.221 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.190 1.190 18 C -0.153 4.153 19 C -0.055 4.055 20 C -0.128 4.128 21 C -0.152 4.152 22 C -0.130 4.130 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.091 0.909 30 H 0.018 0.982 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.165 0.835 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.868 -18.149 6.830 19.481 hybrid contribution -0.333 1.485 -1.034 1.840 sum 1.535 -16.664 5.795 17.710 Atomic orbital electron populations 1.20882 0.90979 1.03957 1.02765 1.23147 0.96113 0.95373 0.90134 1.21654 0.98795 0.90866 1.11631 1.18703 0.84041 0.85846 0.76780 1.90641 1.22399 1.84973 1.49603 1.48162 1.14204 1.09020 1.61397 1.21533 0.98317 0.82534 0.97963 1.21763 0.99764 1.00947 0.92312 1.18627 0.91741 0.92119 0.94969 1.21589 1.41781 0.96965 0.96678 0.92746 1.25748 0.94947 0.97193 1.00775 1.69989 1.44288 1.06706 1.34748 0.85638 0.78539 0.77385 0.80584 1.20582 1.21000 1.18982 1.21853 1.01043 0.97007 0.95379 1.23182 0.80472 1.06298 0.95561 1.21588 0.90700 0.98170 1.02380 1.22524 0.96879 0.93483 1.02349 1.21486 0.93668 0.94145 1.03746 0.91021 0.88976 0.91685 0.91682 0.92456 0.96092 0.90910 0.98154 0.93069 0.90737 0.93624 0.91563 0.83451 0.88138 0.90123 0.90110 0.88015 0.88498 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.94 71.24 0.71 -2.42 16 2 C -0.05 -1.07 6.23 -17.48 -0.11 -1.18 16 3 C -0.23 -6.30 5.82 -18.57 -0.11 -6.41 16 4 C 0.55 20.79 7.51 86.57 0.65 21.44 16 5 O -0.59 -25.89 13.92 -4.06 -0.06 -25.94 16 6 N -0.60 -22.85 2.97 -823.19 -2.45 -25.30 16 7 C 0.12 5.20 6.41 86.36 0.55 5.76 16 8 C -0.11 -5.42 5.16 30.68 0.16 -5.26 16 9 C 0.04 2.18 2.06 -11.50 -0.02 2.16 16 10 C -0.53 -29.05 8.56 25.60 0.22 -28.83 16 11 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 12 C 0.01 0.65 5.30 84.66 0.45 1.10 16 13 N -0.92 -53.14 11.30 21.45 0.24 -52.90 16 14 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 C -0.11 -4.46 5.30 30.67 0.16 -4.30 16 19 C 0.07 2.11 5.79 86.36 0.50 2.61 16 20 C -0.09 -1.78 4.45 30.58 0.14 -1.64 16 21 C -0.12 -1.48 7.17 31.73 0.23 -1.26 16 22 C -0.09 -1.34 6.75 30.51 0.21 -1.14 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 2.04 5.78 -2.39 -0.01 2.03 16 26 H 0.06 2.92 7.05 -2.39 -0.02 2.90 16 27 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.07 4.05 6.03 -2.39 -0.01 4.04 16 30 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.15 3.69 2.05 -20.27 -0.04 3.65 16 36 H 0.10 1.80 6.45 -2.39 -0.02 1.78 16 37 H 0.08 1.52 7.52 -2.39 -0.02 1.50 16 38 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -67.76 314.15 4.47 -63.29 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.97 Total: 14.63 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 3.73 Total: -19.38 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -2.21 Total: -78.20 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.06 Total: -25.94 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -67.76 4.47 -63.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336034250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.665 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds