Wall clock time and date at job start Sun Mar 29 2020 23:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99677 * 2 1 4 4 H 1.48505 * 109.47421 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47402 * 119.99843 * 3 2 1 6 6 H 1.48506 * 109.47236 * 239.99570 * 3 2 1 7 7 C 1.38945 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00436 * 203.37725 * 7 2 1 9 9 N 1.37101 * 119.99703 * 23.38312 * 7 2 1 10 10 C 1.34781 * 119.99745 * 44.85365 * 9 7 2 11 11 O 1.21285 * 120.00297 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99545 * 180.02562 * 10 9 7 13 13 H 1.09001 * 115.55793 * 33.28227 * 12 10 9 14 14 C 1.53034 * 117.50200 * 178.98557 * 12 10 9 15 15 C 1.52842 * 117.49919 * 247.58869 * 12 10 9 16 16 C 1.53151 * 117.67742 * 144.78160 * 15 12 10 17 17 C 1.53184 * 108.88650 * 268.49742 * 16 15 12 18 18 C 1.52938 * 109.45309 * 303.44174 * 17 16 15 19 19 C 1.52947 * 109.82215 * 62.97762 * 18 17 16 20 20 C 1.53146 * 117.68240 * 0.27754 * 15 12 10 21 21 C 1.46498 * 120.00288 * 224.85223 * 9 7 2 22 22 C 1.53008 * 117.49397 * 2.85954 * 21 9 7 23 23 C 1.52998 * 117.49784 * 294.19966 * 21 9 7 24 24 H 0.96998 * 119.99817 * 181.35401 * 1 2 3 25 25 H 1.09000 * 117.50026 * 214.94895 * 14 12 10 26 26 H 1.09000 * 117.50661 * 359.95824 * 14 12 10 27 27 H 1.08997 * 109.57064 * 28.32058 * 16 15 12 28 28 H 1.08999 * 109.56980 * 148.67990 * 16 15 12 29 29 H 1.09003 * 109.47638 * 183.43843 * 17 16 15 30 30 H 1.09003 * 109.47370 * 63.43455 * 17 16 15 31 31 H 1.09000 * 109.41097 * 302.86830 * 18 17 16 32 32 H 1.09004 * 109.41162 * 183.08791 * 18 17 16 33 33 H 1.09009 * 109.47242 * 177.01878 * 19 18 17 34 34 H 1.09004 * 109.47521 * 57.00836 * 19 18 17 35 35 H 1.09003 * 109.57301 * 211.31583 * 20 15 12 36 36 H 1.09010 * 109.56882 * 331.66843 * 20 15 12 37 37 H 1.08997 * 115.55257 * 148.52045 * 21 9 7 38 38 H 1.09000 * 117.49991 * 359.97438 * 22 21 9 39 39 H 1.08998 * 117.49484 * 145.02309 * 22 21 9 40 40 H 1.09002 * 117.50014 * 214.97483 * 23 21 9 41 41 H 1.08998 * 117.50008 * 359.97072 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 1.2830 2.7465 -0.0006 5 1 3.1017 1.6966 1.2125 6 1 3.1019 1.6965 -1.2125 7 6 2.0089 -1.2032 0.0005 8 1 3.0224 -1.2415 0.3716 9 7 1.4079 -2.3420 -0.4702 10 6 0.7082 -2.3081 -1.6217 11 8 0.6099 -1.2700 -2.2412 12 6 0.0471 -3.5597 -2.1388 13 1 -0.3221 -4.2458 -1.3765 14 6 -0.7526 -3.4510 -3.4390 15 6 0.5980 -4.1676 -3.4284 16 6 0.5961 -5.6941 -3.5527 17 6 1.9340 -6.2351 -3.0391 18 6 3.0789 -5.5842 -3.8166 19 6 3.0845 -4.0755 -3.5654 20 6 1.7837 -3.4652 -4.0962 21 6 1.5262 -3.5958 0.2783 22 6 2.2764 -3.5546 1.6112 23 6 2.9174 -4.2222 0.3918 24 1 -0.4850 -0.8398 0.0199 25 1 -1.6478 -4.0659 -3.5321 26 1 -0.8012 -2.4741 -3.9199 27 1 -0.2178 -6.1079 -2.9574 28 1 0.4658 -5.9751 -4.5978 29 1 1.9672 -7.3155 -3.1797 30 1 2.0368 -6.0033 -1.9789 31 1 2.9471 -5.7736 -4.8819 32 1 4.0274 -6.0096 -3.4887 33 1 3.9337 -3.6247 -4.0793 34 1 3.1648 -3.8855 -2.4951 35 1 1.7293 -3.6039 -5.1760 36 1 1.7572 -2.4011 -3.8613 37 1 0.6746 -4.2717 0.2009 38 1 2.6823 -2.5949 1.9309 39 1 1.9187 -4.2039 2.4103 40 1 2.9812 -5.3104 0.3893 41 1 3.7446 -3.7018 -0.0908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336068144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:09 Heat of formation + Delta-G solvation = 2.896201 kcal Electronic energy + Delta-G solvation = -21557.292714 eV Core-core repulsion = 18631.170674 eV Total energy + Delta-G solvation = -2926.122039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.78858 -37.88439 -36.16439 -34.28631 -32.83229 -30.70272 -30.58963 -27.35293 -25.26914 -22.77060 -22.45168 -21.73931 -21.18323 -20.78069 -19.34670 -18.08233 -16.61776 -16.48981 -15.32799 -14.61891 -14.36174 -14.04931 -13.87489 -13.67153 -13.45451 -13.23319 -12.97120 -12.48609 -12.34099 -11.98673 -11.48608 -11.36887 -11.10882 -10.98812 -10.84901 -10.74155 -10.69920 -10.42905 -10.10499 -10.07620 -9.87059 -9.79873 -9.71849 -9.43048 -9.16642 -8.58905 -8.03957 -7.26470 -6.38741 -3.85915 3.41928 3.53197 3.67105 3.69642 4.30954 4.40014 4.63841 4.78446 4.97433 5.00221 5.19062 5.25010 5.35450 5.42220 5.48965 5.51703 5.61906 5.63488 5.73804 5.78611 5.81536 5.88762 5.91934 6.05878 6.11116 6.17169 6.19462 6.25942 6.29051 6.38815 6.41579 6.45543 6.58816 6.65610 6.68872 6.79449 6.88755 6.90474 7.93965 8.43558 8.87582 9.23316 9.60341 10.16780 10.93398 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021158 B = 0.008064 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.065489 B = 3471.200148 C = 3873.734619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.040 3.960 3 Si 1.077 2.923 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.430 4.430 8 H 0.069 0.931 9 N -0.427 5.427 10 C 0.499 3.501 11 O -0.540 6.540 12 C -0.165 4.165 13 H 0.101 0.899 14 C -0.153 4.153 15 C -0.096 4.096 16 C -0.078 4.078 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.088 4.088 21 C 0.074 3.926 22 C -0.175 4.175 23 C -0.200 4.200 24 H 0.270 0.730 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 -12.283 -4.024 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.173 4.173 3 Si 0.904 3.096 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.556 4.556 8 H 0.086 0.914 9 N -0.147 5.147 10 C 0.287 3.713 11 O -0.420 6.420 12 C -0.186 4.186 13 H 0.119 0.881 14 C -0.190 4.190 15 C -0.097 4.097 16 C -0.116 4.116 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.125 4.125 21 C -0.032 4.032 22 C -0.213 4.213 23 C -0.239 4.239 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.786 -10.080 -4.347 11.326 hybrid contribution 0.099 -1.940 0.252 1.959 sum 2.885 -12.020 -4.095 13.022 Atomic orbital electron populations 1.70591 1.07456 1.30949 1.38811 1.26167 0.95995 1.02229 0.92869 0.83408 0.74940 0.74908 0.76340 1.20740 1.21634 1.21172 1.19711 0.98887 0.86773 1.50235 0.91374 1.42864 1.48075 1.06498 1.17261 1.19122 0.83030 0.87963 0.81140 1.90578 1.61784 1.32012 1.57596 1.22446 1.04667 0.99900 0.91627 0.88058 1.22985 0.93727 1.02296 1.00006 1.21392 0.95281 0.93809 0.99182 1.21137 0.97299 0.92380 1.00766 1.21510 0.94634 0.98593 1.00620 1.21461 0.97855 0.96143 0.99695 1.21497 0.97075 0.94522 1.02281 1.21196 0.92162 1.00888 0.98258 1.21716 0.93542 0.90924 0.96968 1.23098 1.04566 1.02705 0.90906 1.23243 0.98688 0.98447 1.03508 0.91898 0.89263 0.87851 0.92210 0.91791 0.92608 0.91589 0.92607 0.92658 0.92628 0.91160 0.92438 0.89834 0.88310 0.87426 0.89884 0.89914 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -26.03 12.56 55.50 0.70 -25.33 16 2 C 0.04 1.16 4.21 -17.47 -0.07 1.09 16 3 Si 1.08 26.01 29.98 -169.99 -5.10 20.91 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.43 -11.83 7.84 -14.93 -0.12 -11.95 16 8 H 0.07 1.86 7.31 -52.49 -0.38 1.47 16 9 N -0.43 -10.58 2.57 -107.73 -0.28 -10.85 16 10 C 0.50 12.42 5.12 -10.98 -0.06 12.37 16 11 O -0.54 -15.71 13.03 5.55 0.07 -15.63 16 12 C -0.16 -3.23 5.03 -91.83 -0.46 -3.69 16 13 H 0.10 1.83 6.56 -51.93 -0.34 1.49 16 14 C -0.15 -2.70 9.51 -26.77 -0.25 -2.95 16 15 C -0.10 -1.58 1.98 -154.49 -0.31 -1.89 16 16 C -0.08 -1.03 5.67 -26.56 -0.15 -1.18 16 17 C -0.12 -1.45 5.93 -26.67 -0.16 -1.61 16 18 C -0.11 -1.46 5.82 -26.79 -0.16 -1.62 16 19 C -0.12 -1.84 5.93 -26.67 -0.16 -2.00 16 20 C -0.09 -1.53 5.29 -26.57 -0.14 -1.67 16 21 C 0.07 1.50 5.89 -67.93 -0.40 1.10 16 22 C -0.18 -3.21 9.80 -26.68 -0.26 -3.48 16 23 C -0.20 -3.45 10.37 -26.69 -0.28 -3.73 16 24 H 0.27 8.44 7.29 -40.82 -0.30 8.14 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.10 2.05 7.67 -51.93 -0.40 1.65 16 27 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.80 6.08 -51.92 -0.32 1.48 16 37 H 0.10 1.82 6.47 -51.93 -0.34 1.48 16 38 H 0.11 2.22 6.72 -51.93 -0.35 1.87 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -31.87 321.77 -9.44 -41.30 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.71 Total: 5.97 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.97 Total: -21.21 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.42 Total: -36.18 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.07 Total: -15.63 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.10 Total: 20.91 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.87 -9.44 -41.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336068144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.197 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds