Wall clock time and date at job start Sun Mar 29 2020 23:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 120.00038 * 2 1 4 4 H 1.48496 * 109.47200 * 269.99605 * 3 2 1 5 5 H 1.48500 * 109.47166 * 29.99703 * 3 2 1 6 6 H 1.48506 * 109.47144 * 149.99760 * 3 2 1 7 7 C 1.38950 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00282 * 199.64231 * 7 2 1 9 9 N 1.37098 * 120.00220 * 19.64349 * 7 2 1 10 10 C 1.34775 * 119.99827 * 46.53175 * 9 7 2 11 11 O 1.21293 * 120.00148 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00252 * 180.02562 * 10 9 7 13 13 H 1.08999 * 115.54773 * 335.02056 * 12 10 9 14 14 C 1.53037 * 117.50711 * 189.33173 * 12 10 9 15 15 C 1.52808 * 59.96195 * 252.49558 * 14 12 10 16 16 C 1.53152 * 117.75120 * 107.63223 * 15 14 12 17 17 C 1.53182 * 108.88513 * 199.61549 * 16 15 14 18 18 C 1.52936 * 109.45242 * 303.43795 * 17 16 15 19 19 C 1.52948 * 109.82235 * 62.98396 * 18 17 16 20 20 C 1.53152 * 117.74570 * 252.36850 * 15 14 12 21 21 C 1.46497 * 120.00199 * 226.52749 * 9 7 2 22 22 C 1.52993 * 117.50069 * 3.54563 * 21 9 7 23 23 C 1.52994 * 117.50157 * 294.92022 * 21 9 7 24 24 H 0.96998 * 120.00200 * 4.90675 * 1 2 3 25 25 H 1.09004 * 117.50063 * 359.97200 * 14 12 10 26 26 H 1.08999 * 117.50248 * 144.99030 * 14 12 10 27 27 H 1.08995 * 109.56704 * 319.43618 * 16 15 14 28 28 H 1.09003 * 109.56838 * 79.79816 * 16 15 14 29 29 H 1.08995 * 109.47371 * 183.44339 * 17 16 15 30 30 H 1.09000 * 109.47101 * 63.42840 * 17 16 15 31 31 H 1.09003 * 109.41257 * 302.87270 * 18 17 16 32 32 H 1.09001 * 109.35412 * 183.05315 * 18 17 16 33 33 H 1.09008 * 109.47434 * 177.01916 * 19 18 17 34 34 H 1.08999 * 109.47699 * 57.00431 * 19 18 17 35 35 H 1.08989 * 109.57154 * 280.19527 * 20 15 14 36 36 H 1.08995 * 109.56808 * 40.44183 * 20 15 14 37 37 H 1.09006 * 115.54942 * 149.24512 * 21 9 7 38 38 H 1.09011 * 117.49624 * 359.97438 * 22 21 9 39 39 H 1.08998 * 117.50356 * 145.01837 * 22 21 9 40 40 H 1.09005 * 117.49854 * 214.98109 * 23 21 9 41 41 H 1.09007 * 117.49807 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0417 -1.2306 0.3149 9 7 1.3832 -2.3563 -0.3981 10 6 0.6471 -2.3678 -1.5270 11 8 0.5378 -1.3581 -2.1901 12 6 -0.0412 -3.6350 -1.9650 13 1 0.4078 -4.5616 -1.6073 14 6 -0.6771 -3.6492 -3.3569 15 6 -1.5620 -3.5983 -2.1122 16 6 -2.2755 -2.2801 -1.7979 17 6 -2.6835 -2.2769 -0.3214 18 6 -3.5548 -3.4998 -0.0311 19 6 -2.7490 -4.7784 -0.2659 20 6 -2.3434 -4.8620 -1.7407 21 6 1.5147 -3.5758 0.4030 22 6 2.2942 -3.4779 1.7159 23 6 2.9066 -4.2009 0.5147 24 1 -0.4850 0.8369 -0.0718 25 1 -0.5980 -2.7417 -3.9557 26 1 -0.6461 -4.5849 -3.9150 27 1 -1.6024 -1.4452 -1.9924 28 1 -3.1642 -2.1881 -2.4223 29 1 -3.2460 -1.3695 -0.1018 30 1 -1.7903 -2.3109 0.3024 31 1 -4.4221 -3.4917 -0.6915 32 1 -3.8889 -3.4674 1.0059 33 1 -3.3580 -5.6446 -0.0068 34 1 -1.8545 -4.7637 0.3568 35 1 -3.2363 -4.9348 -2.3613 36 1 -1.7159 -5.7390 -1.8994 37 1 0.6601 -4.2518 0.3740 38 1 2.7095 -2.5061 1.9834 39 1 1.9525 -4.0895 2.5509 40 1 2.9678 -5.2884 0.5594 41 1 3.7245 -3.7051 -0.0083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336068145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:12 Heat of formation + Delta-G solvation = 6.977939 kcal Electronic energy + Delta-G solvation = -21547.233128 eV Core-core repulsion = 18621.288086 eV Total energy + Delta-G solvation = -2925.945042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.56721 -37.68418 -35.94203 -34.09453 -32.63522 -30.80803 -30.30069 -27.16713 -25.46211 -22.72344 -22.20688 -21.62255 -21.02336 -20.54754 -19.16438 -17.91986 -16.35294 -15.97537 -15.14040 -14.65249 -14.40665 -14.09454 -13.67647 -13.41132 -13.25854 -13.09783 -12.46568 -12.28700 -12.17072 -11.67132 -11.47919 -11.19425 -10.97689 -10.92235 -10.78274 -10.70833 -10.62536 -10.49217 -10.17475 -9.99422 -9.88120 -9.69945 -9.53630 -9.26586 -8.98348 -8.59488 -7.92833 -6.99366 -6.04998 -3.84090 3.34728 3.41089 3.44707 3.83389 4.30750 4.54107 4.80989 4.89399 5.17764 5.20675 5.28240 5.40062 5.50936 5.57429 5.62226 5.69978 5.83818 5.84715 5.87067 5.94764 6.03694 6.08186 6.14617 6.25063 6.25900 6.28223 6.37087 6.42348 6.52946 6.55781 6.59872 6.71989 6.75199 6.81281 6.94790 6.98153 7.23522 7.37052 7.67940 8.34447 9.13420 9.22378 9.71601 10.36271 11.00496 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.008752 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.379552 B = 3198.649370 C = 3703.044401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.080 3.920 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.346 4.346 8 H 0.073 0.927 9 N -0.424 5.424 10 C 0.524 3.476 11 O -0.538 6.538 12 C -0.169 4.169 13 H 0.101 0.899 14 C -0.155 4.155 15 C -0.093 4.093 16 C -0.088 4.088 17 C -0.104 4.104 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.079 4.079 21 C 0.080 3.920 22 C -0.174 4.174 23 C -0.210 4.210 24 H 0.262 0.738 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.129 -9.606 0.002 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.473 4.473 8 H 0.091 0.909 9 N -0.144 5.144 10 C 0.312 3.688 11 O -0.417 6.417 12 C -0.191 4.191 13 H 0.120 0.880 14 C -0.193 4.193 15 C -0.094 4.094 16 C -0.125 4.125 17 C -0.142 4.142 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.116 4.116 21 C -0.026 4.026 22 C -0.211 4.211 23 C -0.250 4.250 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.119 0.881 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.364 -8.932 -0.262 9.945 hybrid contribution 0.470 0.626 0.110 0.791 sum -3.894 -8.306 -0.152 9.175 Atomic orbital electron populations 1.69873 1.06156 1.27377 1.42551 1.25146 0.94774 0.99017 0.94170 0.86371 0.79485 0.82960 0.78202 1.20477 1.21470 1.20043 1.18788 0.94639 0.84600 1.49230 0.90894 1.42630 1.46687 1.07030 1.18082 1.18872 0.81629 0.87311 0.81012 1.90478 1.61936 1.34622 1.54621 1.22523 0.95735 0.99529 1.01271 0.88048 1.22945 1.03349 1.02666 0.90317 1.21402 0.90239 0.96782 1.00958 1.21242 0.99318 0.96237 0.95698 1.21341 0.99912 0.95730 0.97177 1.21540 0.98209 0.95644 1.00173 1.21488 0.99963 0.97278 0.96393 1.21144 0.98982 0.95204 0.96312 1.21667 0.92855 0.91784 0.96342 1.23043 1.04624 1.02360 0.91121 1.23311 0.99420 0.98267 1.03953 0.92821 0.88081 0.89481 0.88099 0.93604 0.92969 0.90364 0.92982 0.92951 0.92854 0.91947 0.91959 0.92419 0.88118 0.87541 0.89984 0.89979 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.18 12.07 55.50 0.67 -22.51 16 2 C 0.08 2.19 4.34 -17.47 -0.08 2.11 16 3 Si 0.90 21.83 29.60 -169.99 -5.03 16.80 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.35 -9.34 7.78 -14.93 -0.12 -9.46 16 8 H 0.07 1.95 7.39 -52.49 -0.39 1.56 16 9 N -0.42 -10.48 2.81 -107.73 -0.30 -10.79 16 10 C 0.52 12.98 5.97 -10.98 -0.07 12.91 16 11 O -0.54 -15.29 12.55 5.55 0.07 -15.22 16 12 C -0.17 -3.34 4.91 -91.83 -0.45 -3.79 16 13 H 0.10 1.82 6.85 -51.93 -0.36 1.47 16 14 C -0.16 -2.75 9.50 -26.81 -0.25 -3.01 16 15 C -0.09 -1.64 1.97 -154.54 -0.30 -1.95 16 16 C -0.09 -1.72 5.29 -26.56 -0.14 -1.86 16 17 C -0.10 -1.97 5.93 -26.67 -0.16 -2.13 16 18 C -0.12 -1.79 5.82 -26.79 -0.16 -1.94 16 19 C -0.11 -1.60 5.93 -26.66 -0.16 -1.76 16 20 C -0.08 -1.13 5.67 -26.56 -0.15 -1.28 16 21 C 0.08 1.62 5.60 -67.94 -0.38 1.24 16 22 C -0.17 -3.20 9.81 -26.74 -0.26 -3.46 16 23 C -0.21 -3.68 10.35 -26.74 -0.28 -3.95 16 24 H 0.26 7.18 8.32 -40.82 -0.34 6.84 16 25 H 0.10 1.98 7.70 -51.93 -0.40 1.58 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.10 2.44 5.71 -51.93 -0.30 2.14 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.82 8.14 -51.94 -0.42 0.40 16 36 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.10 1.89 6.93 -51.93 -0.36 1.53 16 38 H 0.11 2.17 6.78 -51.92 -0.35 1.82 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -29.72 322.70 -9.46 -39.19 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.78 Total: 5.98 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -2.95 Total: -18.32 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.37 Total: -33.29 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.07 Total: -15.22 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.72 -9.46 -39.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336068145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.166 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds