Wall clock time and date at job start Sun Mar 29 2020 23:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86803 * 120.00266 * 2 1 4 4 H 1.48498 * 109.47022 * 275.95370 * 3 2 1 5 5 H 1.48497 * 109.47169 * 35.95202 * 3 2 1 6 6 H 1.48504 * 109.47060 * 155.95216 * 3 2 1 7 7 C 1.38949 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99816 * 345.79801 * 7 2 1 9 9 N 1.37093 * 120.00614 * 165.79385 * 7 2 1 10 10 C 1.34778 * 119.99833 * 317.94641 * 9 7 2 11 11 O 1.21293 * 119.99856 * 359.72294 * 10 9 7 12 12 C 1.50695 * 120.00191 * 179.72421 * 10 9 7 13 13 H 1.08998 * 109.47121 * 299.99922 * 12 10 9 14 14 C 1.52999 * 109.47310 * 60.00099 * 12 10 9 15 15 C 1.52996 * 109.47546 * 119.99969 * 14 12 10 16 16 C 1.53005 * 109.46951 * 59.99909 * 15 14 12 17 17 C 1.52999 * 109.47070 * 300.00383 * 16 15 14 18 18 C 1.52991 * 109.47210 * 359.97438 * 17 16 15 19 19 C 1.53000 * 109.47312 * 299.99879 * 18 17 16 20 20 C 1.52999 * 109.47081 * 300.00401 * 15 14 12 21 21 C 1.46498 * 120.00434 * 137.67248 * 9 7 2 22 22 C 1.53005 * 117.49721 * 2.67308 * 21 9 7 23 23 C 1.53001 * 59.99957 * 252.51644 * 22 21 9 24 24 H 0.97008 * 119.99965 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47058 * 240.00422 * 14 12 10 26 26 H 1.09003 * 109.47124 * 359.97438 * 14 12 10 27 27 H 1.08997 * 109.47368 * 180.02562 * 15 14 12 28 28 H 1.08995 * 109.46902 * 180.02562 * 16 15 14 29 29 H 1.09007 * 109.46796 * 60.00072 * 16 15 14 30 30 H 1.09002 * 109.46574 * 239.99733 * 17 16 15 31 31 H 1.08998 * 109.47172 * 120.00097 * 17 16 15 32 32 H 1.09002 * 109.47342 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.47357 * 179.97438 * 19 18 17 34 34 H 1.08992 * 109.47468 * 300.00485 * 19 18 17 35 35 H 1.09003 * 109.47191 * 179.97438 * 20 15 14 36 36 H 1.09003 * 109.46622 * 299.99643 * 20 15 14 37 37 H 1.08994 * 115.55679 * 148.38551 * 21 9 7 38 38 H 1.08997 * 117.49472 * 0.02562 * 22 21 9 39 39 H 1.09000 * 117.49601 * 145.02395 * 22 21 9 40 40 H 1.09002 * 117.49672 * 252.50979 * 23 22 21 41 41 H 1.08991 * 117.50338 * 107.49272 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3699 2.1190 -1.3925 5 1 1.5142 2.6131 0.8220 6 1 3.6029 1.4070 0.5705 7 6 2.0088 -1.2033 -0.0005 8 1 1.4936 -2.1245 0.2285 9 7 3.3483 -1.2214 -0.2919 10 6 3.8291 -0.4658 -1.2991 11 8 3.0760 0.2263 -1.9509 12 6 5.3024 -0.4809 -1.6154 13 1 5.8647 -0.1463 -0.7436 14 6 5.7305 -1.9030 -1.9833 15 6 6.2945 -1.9140 -3.4055 16 6 7.5050 -0.9812 -3.4814 17 6 7.0768 0.4408 -3.1135 18 6 5.5810 0.4562 -2.7929 19 6 4.7922 -0.0132 -4.0170 20 6 5.2199 -1.4356 -4.3840 21 6 4.2580 -2.0574 0.4953 22 6 3.6438 -2.9347 1.5881 23 6 4.4545 -1.6941 1.9685 24 1 -0.4850 0.8401 0.0004 25 1 6.4961 -2.2438 -1.2862 26 1 4.8683 -2.5676 -1.9289 27 1 6.5990 -2.9272 -3.6678 28 1 7.9064 -0.9888 -4.4947 29 1 8.2705 -1.3221 -2.7843 30 1 7.2753 1.1084 -3.9520 31 1 7.6391 0.7754 -2.2417 32 1 5.2758 1.4694 -2.5312 33 1 3.7264 -0.0026 -3.7885 34 1 4.9910 0.6544 -4.8553 35 1 5.6219 -1.4430 -5.3972 36 1 4.3576 -2.1001 -4.3299 37 1 5.1181 -2.4537 -0.0444 38 1 2.5629 -2.8900 1.7210 39 1 4.0997 -3.9084 1.7674 40 1 5.4439 -1.8517 2.3981 41 1 3.9071 -0.8332 2.3519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336313751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:58 Heat of formation + Delta-G solvation = -26.760344 kcal Electronic energy + Delta-G solvation = -21857.191261 eV Core-core repulsion = 18929.783217 eV Total energy + Delta-G solvation = -2927.408044 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.14788 -39.89602 -38.02634 -34.94742 -33.64244 -32.29137 -32.03981 -31.58724 -27.09746 -24.73123 -23.36027 -23.22129 -22.95830 -22.58677 -21.03534 -19.08253 -18.10273 -17.50219 -17.32562 -17.14253 -16.49124 -16.30309 -15.54421 -15.41295 -15.00529 -14.63058 -14.20066 -13.75727 -13.38450 -13.17135 -13.00999 -12.89462 -12.87548 -12.85347 -12.76575 -12.53844 -12.33051 -12.18212 -12.01589 -11.59226 -11.45744 -11.17925 -11.00698 -10.83997 -10.70958 -10.60037 -10.06135 -9.33849 -8.41647 -6.20454 1.16779 1.26906 1.45840 1.93747 2.40903 2.65701 2.94151 3.22749 3.59387 3.69551 3.76418 4.04305 4.13262 4.18076 4.28616 4.31537 4.40492 4.44206 4.48700 4.49947 4.56225 4.62402 4.68099 4.76305 4.87089 4.90951 4.99965 5.12874 5.17332 5.24614 5.27657 5.35981 5.43135 5.44933 5.51115 5.54811 5.62817 5.66085 5.72152 5.84804 6.75719 6.91033 7.34972 7.89383 8.64363 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.009424 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.455313 B = 2970.399435 C = 3593.020987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.282 1.282 5 H -0.320 1.320 6 H -0.273 1.273 7 C -0.330 4.330 8 H 0.069 0.931 9 N -0.454 5.454 10 C 0.452 3.548 11 O -0.580 6.580 12 C -0.090 4.090 13 H 0.097 0.903 14 C -0.103 4.103 15 C -0.081 4.081 16 C -0.104 4.104 17 C -0.107 4.107 18 C -0.067 4.067 19 C -0.127 4.127 20 C -0.110 4.110 21 C 0.036 3.964 22 C -0.170 4.170 23 C -0.188 4.188 24 H 0.270 0.730 25 H 0.104 0.896 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.160 0.840 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.008 -4.887 -3.331 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.167 4.167 3 Si 0.816 3.184 4 H -0.210 1.210 5 H -0.251 1.251 6 H -0.198 1.198 7 C -0.458 4.458 8 H 0.087 0.913 9 N -0.174 5.174 10 C 0.245 3.755 11 O -0.467 6.467 12 C -0.111 4.111 13 H 0.115 0.885 14 C -0.141 4.141 15 C -0.099 4.099 16 C -0.141 4.141 17 C -0.144 4.144 18 C -0.086 4.086 19 C -0.164 4.164 20 C -0.147 4.147 21 C -0.067 4.067 22 C -0.208 4.208 23 C -0.226 4.226 24 H 0.080 0.920 25 H 0.122 0.878 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.177 0.823 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.459 -4.505 -3.640 20.303 hybrid contribution -1.214 1.163 0.210 1.694 sum 18.245 -3.342 -3.430 18.863 Atomic orbital electron populations 1.69793 1.07905 1.28416 1.49572 1.25979 0.95541 1.02141 0.93087 0.85112 0.78009 0.79267 0.75999 1.20976 1.25132 1.19826 1.18683 0.83558 0.93933 1.49596 0.91320 1.43345 1.05986 1.40678 1.27408 1.21422 0.92079 0.82142 0.79903 1.90354 1.60823 1.43999 1.51513 1.21270 0.90537 0.99550 0.99775 0.88537 1.21731 1.01025 0.92893 0.98437 1.21073 0.95155 1.00367 0.93332 1.21533 0.96560 0.93320 1.02711 1.21542 0.92458 0.98541 1.01874 1.20782 0.97100 0.96699 0.94022 1.21688 1.00467 0.97344 0.96918 1.21525 0.98184 0.95204 0.99820 1.22595 0.96872 0.99258 0.88019 1.23149 0.99808 0.95940 1.01867 1.23315 1.02409 0.98769 0.98136 0.92043 0.87776 0.92949 0.88766 0.90618 0.89771 0.91256 0.90951 0.94385 0.93450 0.92262 0.90463 0.94493 0.82320 0.90960 0.85132 0.84813 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.90 13.96 21.66 0.30 -59.60 16 2 C 0.04 2.19 5.00 84.93 0.42 2.61 16 3 Si 0.98 55.00 24.35 68.60 1.67 56.67 16 4 H -0.28 -16.76 6.29 99.48 0.63 -16.13 16 5 H -0.32 -17.55 7.11 99.48 0.71 -16.84 16 6 H -0.27 -14.31 6.96 99.48 0.69 -13.62 16 7 C -0.33 -19.32 8.69 84.04 0.73 -18.59 16 8 H 0.07 4.28 7.07 -2.91 -0.02 4.26 16 9 N -0.45 -21.80 2.48 -613.13 -1.52 -23.32 16 10 C 0.45 21.31 4.57 87.66 0.40 21.71 16 11 O -0.58 -32.66 8.64 -3.07 -0.03 -32.69 16 12 C -0.09 -3.04 1.91 -11.53 -0.02 -3.06 16 13 H 0.10 2.97 8.11 -2.39 -0.02 2.95 16 14 C -0.10 -2.65 3.46 30.59 0.11 -2.54 16 15 C -0.08 -1.75 3.20 -10.79 -0.03 -1.78 16 16 C -0.10 -1.79 5.71 30.60 0.17 -1.62 16 17 C -0.11 -2.33 5.71 30.59 0.17 -2.16 16 18 C -0.07 -2.17 2.36 -10.78 -0.03 -2.20 16 19 C -0.13 -4.36 5.39 30.59 0.16 -4.20 16 20 C -0.11 -3.03 5.71 30.59 0.17 -2.86 16 21 C 0.04 1.28 5.35 44.99 0.24 1.52 16 22 C -0.17 -5.57 9.80 30.60 0.30 -5.27 16 23 C -0.19 -5.97 10.36 30.60 0.32 -5.65 16 24 H 0.27 16.77 8.31 -92.70 -0.77 16.00 16 25 H 0.10 1.89 7.44 -2.38 -0.02 1.87 16 26 H 0.05 1.59 6.66 -2.39 -0.02 1.58 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 33 H 0.05 2.14 5.52 -2.38 -0.01 2.12 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.16 4.30 4.52 -2.39 -0.01 4.29 16 38 H 0.07 2.95 6.54 -2.39 -0.02 2.93 16 39 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -76.94 298.82 4.46 -72.48 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.91 Total: 10.53 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 3.13 Total: -24.07 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -1.22 Total: -82.92 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.03 Total: -32.69 kcal Atomic # 14 Polarization: 55.00 SS G_CDS: 1.67 Total: 56.67 kcal Total: -76.94 4.46 -72.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336313751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.724 kcal (2) G-P(sol) polarization free energy of solvation -76.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds