Wall clock time and date at job start Mon Mar 30 2020 00:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41386 * 126.58285 * 2 1 4 4 C 1.34513 * 106.84061 * 180.15864 * 3 2 1 5 5 C 1.50707 * 125.78557 * 179.88379 * 4 3 2 6 6 H 1.08995 * 109.47120 * 19.72474 * 5 4 3 7 7 C 1.52995 * 109.47067 * 259.71595 * 5 4 3 8 8 N 1.46904 * 109.46539 * 139.71960 * 5 4 3 9 9 C 1.46898 * 110.99604 * 204.99961 * 8 5 4 10 10 C 1.53007 * 109.46930 * 174.69204 * 9 8 5 11 11 C 1.50693 * 115.55061 * 39.57451 * 10 9 8 12 12 H 1.08006 * 119.99781 * 265.26330 * 11 10 9 13 13 C 1.37876 * 120.00028 * 85.26138 * 11 10 9 14 14 N 1.31510 * 120.00126 * 353.33910 * 13 11 10 15 15 Si 1.86802 * 119.99931 * 173.33725 * 13 11 10 16 16 H 1.48506 * 109.47200 * 90.00020 * 15 13 11 17 17 H 1.48500 * 109.47341 * 209.99790 * 15 13 11 18 18 H 1.48500 * 109.47127 * 330.00390 * 15 13 11 19 19 C 1.52994 * 117.49666 * 253.86481 * 10 9 8 20 20 C 1.52996 * 60.00205 * 252.51411 * 19 10 9 21 21 O 1.34300 * 108.42074 * 359.62438 * 4 3 2 22 22 C 1.34300 * 109.47844 * 0.24314 * 21 4 3 23 23 C 1.50700 * 125.79063 * 180.02562 * 22 21 4 24 24 H 1.08997 * 109.47667 * 270.25476 * 1 2 3 25 25 H 1.09003 * 109.46650 * 30.25114 * 1 2 3 26 26 H 1.08998 * 109.46709 * 150.24852 * 1 2 3 27 27 H 1.08002 * 126.57596 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47165 * 180.02562 * 7 5 4 29 29 H 1.08996 * 109.47417 * 300.00146 * 7 5 4 30 30 H 1.09002 * 109.46957 * 60.00637 * 7 5 4 31 31 H 1.00901 * 110.99931 * 81.04567 * 8 5 4 32 32 H 1.08998 * 109.47073 * 294.69070 * 9 8 5 33 33 H 1.08994 * 109.47241 * 54.69132 * 9 8 5 34 34 H 0.97001 * 120.00306 * 185.06653 * 14 13 11 35 35 H 1.09003 * 117.50244 * 359.97438 * 19 10 9 36 36 H 1.09001 * 117.50027 * 145.02099 * 19 10 9 37 37 H 1.09001 * 117.49511 * 252.51309 * 20 19 10 38 38 H 1.09000 * 117.52050 * 107.48477 * 20 19 10 39 39 H 1.09005 * 109.47060 * 359.97438 * 23 22 21 40 40 H 1.09005 * 109.47090 * 119.97290 * 23 22 21 41 41 H 1.08991 * 109.47451 * 239.97171 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6810 -0.0036 5 6 4.8581 1.5340 -0.0074 6 1 4.6111 2.5372 0.3399 7 6 5.4201 1.6100 -1.4283 8 7 5.8624 0.9402 0.8853 9 6 6.7978 1.9602 1.3776 10 6 7.7436 1.3322 2.4033 11 6 8.2206 -0.0603 2.0806 12 1 7.7018 -0.9164 2.4862 13 6 9.3192 -0.2416 1.2674 14 7 9.8713 0.7907 0.6682 15 14 10.0234 -1.9535 1.0168 16 1 9.3647 -2.5939 -0.1500 17 1 11.4843 -1.8565 0.7688 18 1 9.7809 -2.7713 2.2324 19 6 7.5188 1.6787 3.8765 20 6 8.7184 2.2627 3.1278 21 8 3.5847 -0.6617 0.0026 22 6 2.3086 -1.0802 0.0048 23 6 1.8521 -2.5164 0.0121 24 1 -0.3634 0.0046 1.0276 25 1 -0.3633 0.8878 -0.5178 26 1 -0.3633 -0.8922 -0.5100 27 1 2.0367 2.1690 0.0004 28 1 6.3190 2.2266 -1.4311 29 1 5.6671 0.6067 -1.7755 30 1 4.6750 2.0505 -2.0907 31 1 6.3552 0.1889 0.4262 32 1 7.3773 2.3548 0.5429 33 1 6.2388 2.7698 1.8467 34 1 10.5972 0.6553 0.0392 35 1 6.6973 2.3544 4.1149 36 1 7.7156 0.8993 4.6126 37 1 9.7046 1.8674 3.3714 38 1 8.6863 3.3221 2.8734 39 1 2.7215 -3.1739 0.0149 40 1 1.2528 -2.7026 0.9033 41 1 1.2519 -2.7114 -0.8765 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337488122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:22 Heat of formation + Delta-G solvation = 9.080995 kcal Electronic energy + Delta-G solvation = -20064.601482 eV Core-core repulsion = 17138.747636 eV Total energy + Delta-G solvation = -2925.853847 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.44804 -38.96324 -36.96788 -35.10232 -33.95805 -32.83372 -30.88449 -29.21590 -27.57240 -26.80399 -25.67627 -22.97930 -22.82173 -22.23149 -20.99910 -19.84229 -18.02047 -17.39327 -17.04040 -16.58801 -16.20965 -15.69566 -15.59221 -15.17711 -14.47479 -14.34672 -14.13322 -13.94109 -13.61985 -13.55055 -13.41844 -13.38459 -13.14012 -13.01642 -12.87500 -12.79591 -12.71106 -12.33276 -12.32221 -12.08625 -11.96490 -11.29221 -10.75911 -10.41219 -10.37508 -9.93833 -9.12179 -8.94518 -8.06711 -6.14960 0.88890 1.39545 1.42721 1.51320 1.71422 2.17873 2.43959 3.19928 3.31479 3.62060 3.83079 4.02715 4.09380 4.19381 4.22896 4.38897 4.48954 4.57025 4.60814 4.69181 4.72396 4.75711 4.79607 4.88849 4.91777 4.93988 5.02043 5.05716 5.12402 5.13298 5.17045 5.27473 5.29092 5.43009 5.61674 5.66346 5.80890 5.84145 6.31890 6.44325 6.56193 6.63663 6.90706 7.51059 9.00504 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020196 B = 0.005439 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.099203 B = 5147.179711 C = 5698.096078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.191 4.191 3 C -0.221 4.221 4 C 0.004 3.996 5 C 0.158 3.842 6 H 0.111 0.889 7 C -0.168 4.168 8 N -0.673 5.673 9 C 0.120 3.880 10 C 0.022 3.978 11 C -0.489 4.489 12 H 0.044 0.956 13 C 0.031 3.969 14 N -0.905 5.905 15 Si 0.939 3.061 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.190 4.190 20 C -0.163 4.163 21 O -0.189 6.189 22 C -0.048 4.048 23 C -0.068 4.068 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.160 0.840 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.344 0.656 32 H 0.012 0.988 33 H 0.056 0.944 34 H 0.258 0.742 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.641 -0.327 -3.851 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.193 4.193 3 C -0.240 4.240 4 C -0.047 4.047 5 C 0.048 3.952 6 H 0.128 0.872 7 C -0.227 4.227 8 N -0.304 5.304 9 C -0.009 4.009 10 C 0.021 3.979 11 C -0.527 4.527 12 H 0.063 0.937 13 C -0.169 4.169 14 N -0.543 5.543 15 Si 0.766 3.234 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.227 4.227 20 C -0.201 4.201 21 O -0.086 6.086 22 C -0.098 4.098 23 C -0.124 4.124 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.178 0.822 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.164 0.836 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.590 -0.436 -3.357 16.932 hybrid contribution 1.511 -0.489 -0.908 1.829 sum -15.079 -0.925 -4.266 15.698 Atomic orbital electron populations 1.20188 0.86998 1.03384 1.02550 1.20547 0.98470 0.91460 1.08795 1.21643 0.91202 1.00738 1.10439 1.22595 0.96986 0.80389 1.04763 1.20157 0.87542 0.95113 0.92401 0.87165 1.22396 1.01593 1.01899 0.96830 1.60450 1.17928 1.11929 1.40114 1.21224 0.91523 0.91990 0.96146 1.18975 0.95682 0.94421 0.88773 1.20496 1.10991 0.91037 1.30214 0.93729 1.25518 0.96400 0.99127 0.95863 1.70074 1.25749 1.30603 1.27918 0.85849 0.77525 0.81679 0.78371 1.20291 1.21205 1.19908 1.22988 0.99582 1.02881 0.97230 1.22424 0.93596 0.97284 1.06782 1.84004 1.30054 1.23010 1.71537 1.23004 0.80559 0.98717 1.07489 1.20390 1.01768 0.85530 1.04742 0.91031 0.90919 0.90322 0.82190 0.92255 0.93642 0.90126 0.83645 0.96971 0.92531 0.93303 0.89455 0.91205 0.92554 0.90733 0.91265 0.88424 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.18 71.23 0.72 -0.60 16 2 C -0.19 -5.09 6.16 -19.94 -0.12 -5.21 16 3 C -0.22 -6.42 10.76 22.19 0.24 -6.19 16 4 C 0.00 0.12 6.16 24.83 0.15 0.27 16 5 C 0.16 5.41 3.04 44.17 0.13 5.54 16 6 H 0.11 3.39 7.70 -2.39 -0.02 3.37 16 7 C -0.17 -5.33 9.15 71.98 0.66 -4.67 16 8 N -0.67 -28.38 5.98 -495.45 -2.96 -31.35 16 9 C 0.12 5.30 5.63 86.31 0.49 5.79 16 10 C 0.02 1.09 1.76 -52.93 -0.09 1.00 16 11 C -0.49 -26.60 7.47 25.60 0.19 -26.41 16 12 H 0.04 2.52 7.82 -2.91 -0.02 2.49 16 13 C 0.03 1.69 5.39 84.65 0.46 2.14 16 14 N -0.91 -50.78 12.93 21.45 0.28 -50.50 16 15 Si 0.94 43.73 29.55 68.60 2.03 45.76 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 19 C -0.19 -8.38 9.88 30.59 0.30 -8.08 16 20 C -0.16 -7.70 9.46 30.59 0.29 -7.41 16 21 O -0.19 -6.94 10.64 -2.42 -0.03 -6.96 16 22 C -0.05 -1.40 7.32 24.83 0.18 -1.22 16 23 C -0.07 -1.35 9.94 71.24 0.71 -0.64 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.10 7.89 -2.39 -0.02 1.08 16 27 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 28 H 0.06 1.96 7.56 -2.39 -0.02 1.95 16 29 H 0.04 1.55 8.13 -2.39 -0.02 1.53 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.34 16.20 7.45 -89.69 -0.67 15.53 16 32 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 33 H 0.06 2.25 7.73 -2.39 -0.02 2.23 16 34 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 35 H 0.09 3.42 8.08 -2.39 -0.02 3.40 16 36 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -61.93 342.30 3.95 -57.98 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.33 Total: 30.76 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 4.31 Total: -45.68 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -2.69 Total: -81.85 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.03 Total: -6.96 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -61.93 3.95 -57.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337488122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.060 kcal (2) G-P(sol) polarization free energy of solvation -61.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds