Wall clock time and date at job start Mon Mar 30 2020 00:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34508 * 125.78895 * 2 1 4 4 C 1.41383 * 106.84139 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.84135 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.79126 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47108 * 19.99676 * 6 5 4 8 8 N 1.46896 * 109.47025 * 140.00028 * 6 5 4 9 9 C 1.46913 * 110.99893 * 276.65906 * 8 6 5 10 10 C 1.53004 * 109.46781 * 184.53439 * 9 8 6 11 11 C 1.50702 * 109.46383 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00460 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99366 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00394 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99617 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46969 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47238 * 119.99816 * 15 13 11 18 18 H 1.48506 * 109.46993 * 240.00039 * 15 13 11 19 19 C 1.53001 * 109.46841 * 259.99861 * 6 5 4 20 20 C 1.53784 * 113.61280 * 174.11102 * 19 6 5 21 21 C 1.53779 * 87.08052 * 220.01931 * 20 19 6 22 22 C 1.53778 * 113.61519 * 76.61568 * 19 6 5 23 23 O 1.34301 * 108.41787 * 0.26055 * 5 4 3 24 24 H 1.09004 * 109.46673 * 90.00758 * 1 2 3 25 25 H 1.09001 * 109.47075 * 210.00135 * 1 2 3 26 26 H 1.08995 * 109.47083 * 330.00739 * 1 2 3 27 27 H 1.07999 * 126.58284 * 0.02562 * 3 2 1 28 28 H 1.07999 * 126.58270 * 180.02562 * 4 3 2 29 29 H 1.00905 * 110.99890 * 152.71164 * 8 6 5 30 30 H 1.09001 * 109.46773 * 304.52835 * 9 8 6 31 31 H 1.08996 * 109.46711 * 64.53007 * 9 8 6 32 32 H 1.08993 * 109.46798 * 299.99897 * 10 9 8 33 33 H 1.08997 * 109.47348 * 60.00107 * 10 9 8 34 34 H 0.96997 * 120.00363 * 179.97438 * 14 13 11 35 35 H 1.08997 * 112.90867 * 305.36170 * 19 6 5 36 36 H 1.09005 * 113.61637 * 334.56799 * 20 19 6 37 37 H 1.09004 * 113.61447 * 105.46530 * 20 19 6 38 38 H 1.09003 * 113.61301 * 139.98334 * 21 20 19 39 39 H 1.09001 * 113.61230 * 270.88014 * 21 20 19 40 40 H 1.08996 * 113.61649 * 254.52833 * 22 19 6 41 41 H 1.09006 * 113.61694 * 25.42799 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0004 6 6 4.7706 -1.6379 -0.0003 7 1 5.6505 -1.0990 0.3510 8 7 4.5053 -2.7757 0.8902 9 6 4.8049 -2.4322 2.2868 10 6 4.6255 -3.6712 3.1664 11 6 4.9334 -3.3190 4.5989 12 1 5.2273 -2.3121 4.8563 13 6 4.8390 -4.2820 5.5812 14 7 4.4797 -5.5077 5.2681 15 14 5.2200 -3.8452 7.3570 16 1 5.5972 -2.4116 7.4442 17 1 4.0204 -4.0939 8.1963 18 1 6.3460 -4.6832 7.8422 19 6 5.0190 -2.1491 -1.4208 20 6 6.2991 -2.9902 -1.5577 21 6 6.5296 -2.2776 -2.9008 22 6 5.6939 -1.1158 -2.3381 23 8 2.2925 -1.0895 -0.0054 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.9666 2.1204 0.0004 28 1 4.5212 1.2433 -0.0004 29 1 5.0236 -3.5911 0.5992 30 1 5.8336 -2.0795 2.3615 31 1 4.1265 -1.6476 2.6215 32 1 3.5969 -4.0240 3.0916 33 1 5.3039 -4.4559 2.8317 34 1 4.4136 -6.1852 5.9590 35 1 4.1396 -2.6172 -1.8631 36 1 7.0548 -2.7608 -0.8064 37 1 6.1107 -4.0592 -1.6572 38 1 7.5722 -2.0171 -3.0836 39 1 6.0632 -2.7808 -3.7478 40 1 5.0169 -0.6714 -3.0677 41 1 6.2841 -0.3738 -1.8002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349718109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:29 Heat of formation + Delta-G solvation = 16.636347 kcal Electronic energy + Delta-G solvation = -19842.938823 eV Core-core repulsion = 16917.412602 eV Total energy + Delta-G solvation = -2925.526222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.28076 -39.16388 -35.66365 -33.09658 -32.85680 -31.78632 -29.96871 -27.46781 -25.79749 -25.37833 -23.85344 -22.06963 -21.44838 -20.59045 -19.73050 -19.29497 -16.55572 -16.35767 -15.99023 -15.45357 -15.10994 -14.56477 -14.44118 -14.25300 -13.45885 -13.01183 -12.92050 -12.89869 -12.63835 -12.52034 -12.45714 -12.23604 -11.86789 -11.69816 -11.50932 -11.07607 -10.93688 -10.65476 -10.52152 -10.34914 -10.27151 -10.02226 -9.58053 -9.35252 -9.12585 -8.34976 -7.97140 -7.90889 -5.98625 -4.00962 2.02433 2.85242 3.21981 3.32060 3.39315 3.43730 4.34498 4.50432 4.52242 4.65934 4.78480 4.86171 5.01508 5.24929 5.29710 5.34418 5.37497 5.46915 5.48907 5.53656 5.66698 5.68679 5.75609 5.83505 5.85860 5.95347 6.04980 6.16822 6.18583 6.33397 6.36305 6.45373 6.47876 6.78147 6.98371 7.35848 7.60611 7.73079 7.83365 7.94555 8.08766 8.44648 9.06187 9.62746 11.12906 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.005167 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.381974 B = 5417.255543 C = 6674.184852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.027 4.027 3 C -0.215 4.215 4 C -0.224 4.224 5 C 0.028 3.972 6 C 0.172 3.828 7 H 0.069 0.931 8 N -0.682 5.682 9 C 0.067 3.933 10 C 0.025 3.975 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.107 4.107 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.132 4.132 23 O -0.151 6.151 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.344 0.656 30 H 0.017 0.983 31 H 0.057 0.943 32 H 0.025 0.975 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 10.317 -16.225 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.234 4.234 4 C -0.244 4.244 5 C -0.024 4.024 6 C 0.061 3.939 7 H 0.087 0.913 8 N -0.314 5.314 9 C -0.061 4.061 10 C -0.012 4.012 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.126 4.126 20 C -0.177 4.177 21 C -0.177 4.177 22 C -0.170 4.170 23 O -0.046 6.046 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.164 0.836 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.956 9.967 -16.076 19.016 hybrid contribution 1.194 0.467 1.142 1.717 sum -0.761 10.434 -14.934 18.234 Atomic orbital electron populations 1.20235 0.85678 1.03915 1.02918 1.22403 0.94025 0.84655 1.06648 1.21418 0.92768 0.98944 1.10262 1.21429 0.97912 0.93832 1.11202 1.22421 0.83088 0.93550 1.03309 1.20055 0.89663 0.91073 0.93086 0.91341 1.60517 1.62773 1.04960 1.03131 1.22228 0.97013 1.01141 0.85709 1.19079 0.97907 0.91316 0.92930 1.21198 1.46033 0.96165 0.92463 0.92731 1.24995 0.95302 0.95008 0.99016 1.69979 1.47962 1.02127 1.33191 0.86540 0.77951 0.78492 0.85047 1.19768 1.20958 1.21015 1.22736 0.98109 0.97710 0.94046 1.22965 0.97299 0.99723 0.97706 1.22778 1.00143 0.97611 0.97204 1.22915 0.98822 0.96499 0.98794 1.84061 1.16129 1.34142 1.70269 0.90631 0.90494 0.89796 0.84146 0.84199 0.83639 0.96469 0.92432 0.95614 0.96758 0.93051 0.88385 0.89954 0.90878 0.91517 0.90257 0.91533 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.42 36.01 0.38 -0.38 16 2 C -0.03 -0.39 7.32 -35.63 -0.26 -0.66 16 3 C -0.21 -3.03 10.81 -39.70 -0.43 -3.46 16 4 C -0.22 -3.35 10.80 -39.70 -0.43 -3.78 16 5 C 0.03 0.47 5.81 -35.62 -0.21 0.26 16 6 C 0.17 2.64 2.19 -68.87 -0.15 2.49 16 7 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 8 N -0.68 -12.65 6.32 -107.95 -0.68 -13.33 16 9 C 0.07 1.47 5.46 -3.81 -0.02 1.45 16 10 C 0.03 0.67 5.19 -27.88 -0.14 0.52 16 11 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 15 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.11 -1.35 3.20 -89.81 -0.29 -1.63 16 20 C -0.14 -1.55 6.78 -25.92 -0.18 -1.72 16 21 C -0.14 -1.33 8.08 -25.92 -0.21 -1.54 16 22 C -0.13 -1.39 7.54 -25.92 -0.20 -1.58 16 23 O -0.15 -2.68 10.65 5.70 0.06 -2.62 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16 29 H 0.34 6.03 7.58 -39.29 -0.30 5.73 16 30 H 0.02 0.36 7.95 -51.93 -0.41 -0.05 16 31 H 0.06 1.34 8.02 -51.93 -0.42 0.92 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -31.92 340.23 -9.30 -41.23 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.98 Total: 2.95 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -2.55 Total: -23.80 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.05 Total: -39.85 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: 0.06 Total: -2.62 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.92 -9.30 -41.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349718109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.862 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds