Wall clock time and date at job start Mon Mar 30 2020 00:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34520 * 125.79145 * 2 1 4 4 C 1.41378 * 106.83948 * 179.75393 * 3 2 1 5 5 C 1.34521 * 106.84228 * 0.37454 * 4 3 2 6 6 C 1.50697 * 125.78897 * 179.88949 * 5 4 3 7 7 H 1.09003 * 109.47373 * 339.71681 * 6 5 4 8 8 N 1.46897 * 109.47067 * 219.71444 * 6 5 4 9 9 C 1.46904 * 110.99938 * 85.63247 * 8 6 5 10 10 C 1.53002 * 109.47276 * 174.80742 * 9 8 6 11 11 C 1.50694 * 109.47049 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00459 * 359.97438 * 11 10 9 13 13 C 1.37886 * 120.00132 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99396 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00324 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46971 * 59.99883 * 15 13 11 17 17 H 1.48495 * 109.46999 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46916 * 299.99709 * 15 13 11 19 19 C 1.53003 * 109.47174 * 99.71645 * 6 5 4 20 20 C 1.53777 * 113.61357 * 279.77901 * 19 6 5 21 21 C 1.53960 * 87.01670 * 220.04904 * 20 19 6 22 22 C 1.53778 * 113.61184 * 182.16679 * 19 6 5 23 23 O 1.34303 * 125.78786 * 179.97438 * 2 1 3 24 24 H 1.08991 * 109.47664 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47028 * 299.99736 * 1 2 3 26 26 H 1.09003 * 109.46897 * 59.99473 * 1 2 3 27 27 H 1.07998 * 126.57653 * 0.02562 * 3 2 1 28 28 H 1.08003 * 126.58153 * 180.24028 * 4 3 2 29 29 H 1.00895 * 111.00129 * 321.68268 * 8 6 5 30 30 H 1.08999 * 109.47027 * 54.80853 * 9 8 6 31 31 H 1.08994 * 109.47172 * 294.80980 * 9 8 6 32 32 H 1.09004 * 109.47092 * 300.00070 * 10 9 8 33 33 H 1.08999 * 109.47002 * 60.00096 * 10 9 8 34 34 H 0.97005 * 119.99409 * 180.02562 * 14 13 11 35 35 H 1.08997 * 112.84846 * 50.97245 * 19 6 5 36 36 H 1.09007 * 113.61386 * 334.56151 * 20 19 6 37 37 H 1.09002 * 113.61776 * 105.46913 * 20 19 6 38 38 H 1.09002 * 113.53447 * 270.80561 * 21 20 19 39 39 H 1.08997 * 113.74164 * 139.94801 * 21 20 19 40 40 H 1.08998 * 113.61518 * 254.52981 * 22 19 6 41 41 H 1.09002 * 113.61821 * 25.43844 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6308 0.6320 0.0058 5 6 3.5813 -0.7123 0.0006 6 6 4.7705 -1.6380 0.0015 7 1 5.6507 -1.0992 -0.3495 8 7 4.5058 -2.7761 -0.8887 9 6 4.8574 -2.4511 -2.2775 10 6 4.6913 -3.6966 -3.1505 11 6 5.0526 -3.3633 -4.5750 12 1 5.3687 -2.3631 -4.8322 13 6 4.9787 -4.3351 -5.5504 14 7 4.5934 -5.5529 -5.2374 15 14 5.4259 -3.9218 -7.3164 16 1 6.8365 -3.4612 -7.3750 17 1 5.2648 -5.1307 -8.1636 18 1 4.5325 -2.8452 -7.8143 19 6 5.0182 -2.1487 1.4224 20 6 5.7711 -1.1475 2.3143 21 6 6.5497 -2.3530 2.8720 22 6 6.2480 -3.0641 1.5422 23 8 2.2924 -1.0894 0.0005 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.9666 2.1204 0.0004 28 1 4.5213 1.2432 0.0110 29 1 3.5441 -3.0733 -0.8193 30 1 5.8926 -2.1127 -2.3205 31 1 4.2014 -1.6611 -2.6430 32 1 5.3473 -4.4866 -2.7849 33 1 3.6561 -4.0350 -3.1075 34 1 4.5418 -6.2367 -5.9235 35 1 4.1216 -2.5589 1.8870 36 1 6.3923 -0.4469 1.7562 37 1 5.1365 -0.6571 3.0524 38 1 6.0722 -2.8184 3.7342 39 1 7.6098 -2.1553 3.0308 40 1 5.9978 -4.1186 1.6580 41 1 6.9999 -2.8883 0.7728 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349718111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:31 Heat of formation + Delta-G solvation = 15.640500 kcal Electronic energy + Delta-G solvation = -19842.501770 eV Core-core repulsion = 16916.932365 eV Total energy + Delta-G solvation = -2925.569405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.48310 -38.92806 -35.71831 -33.11896 -33.04788 -31.81751 -29.97549 -27.39709 -25.69428 -25.30180 -23.89079 -21.94221 -21.72168 -20.52240 -19.90536 -19.17118 -16.84287 -16.32214 -16.07904 -15.41755 -15.09748 -14.66005 -14.39498 -14.01239 -13.48018 -13.06937 -13.03614 -12.83638 -12.73509 -12.63562 -12.29748 -12.20631 -11.88940 -11.53588 -11.43441 -11.13144 -10.90921 -10.71959 -10.47359 -10.27532 -10.14975 -9.94793 -9.73562 -9.34360 -9.13517 -8.33172 -8.12040 -7.89183 -5.97044 -3.99514 1.85081 2.73101 2.99556 3.35068 3.39202 3.41725 4.40109 4.54158 4.61295 4.79875 4.84683 4.97343 5.04577 5.14803 5.26066 5.30214 5.37123 5.38804 5.50008 5.60647 5.63714 5.79383 5.86362 5.90853 5.94441 5.95230 6.08043 6.20516 6.29024 6.31679 6.39168 6.45255 6.63008 6.65127 6.99448 7.24903 7.49767 7.74792 7.81217 7.95820 8.10578 8.46022 9.07412 9.63880 11.14351 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.005156 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.200526 B = 5428.797047 C = 6683.384293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.022 4.022 3 C -0.213 4.213 4 C -0.212 4.212 5 C -0.024 4.024 6 C 0.177 3.823 7 H 0.100 0.900 8 N -0.676 5.676 9 C 0.066 3.934 10 C 0.028 3.972 11 C -0.522 4.522 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.095 4.095 20 C -0.135 4.135 21 C -0.147 4.147 22 C -0.114 4.114 23 O -0.170 6.170 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.343 0.657 30 H 0.058 0.942 31 H 0.015 0.985 32 H 0.026 0.974 33 H 0.013 0.987 34 H 0.261 0.739 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 11.052 15.671 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.232 4.232 4 C -0.232 4.232 5 C -0.077 4.077 6 C 0.066 3.934 7 H 0.118 0.882 8 N -0.305 5.305 9 C -0.062 4.062 10 C -0.009 4.009 11 C -0.561 4.561 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.114 4.114 20 C -0.173 4.173 21 C -0.184 4.184 22 C -0.151 4.151 23 O -0.066 6.066 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.161 0.839 28 H 0.161 0.839 29 H 0.162 0.838 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.500 10.238 15.701 18.910 hybrid contribution -0.526 1.139 -1.349 1.842 sum -3.026 11.377 14.351 18.562 Atomic orbital electron populations 1.20262 0.85450 1.03971 1.03156 1.22388 0.93929 0.84328 1.06589 1.21479 0.92880 0.99087 1.09775 1.21523 0.97920 0.93981 1.09756 1.23730 0.83834 0.95533 1.04573 1.20486 0.90200 0.88333 0.94360 0.88187 1.60641 1.28895 1.32371 1.08577 1.22231 0.98794 0.99748 0.85453 1.19029 0.97339 0.91878 0.92680 1.21138 1.45329 0.96374 0.93216 0.92893 1.24992 0.95338 0.95024 0.98925 1.69970 1.47511 1.02168 1.33580 0.86658 0.79000 0.77655 0.84676 1.20221 1.21253 1.20326 1.22531 0.98266 0.97360 0.93252 1.22968 0.98838 0.96484 0.98962 1.22894 1.00014 0.97590 0.97921 1.22692 0.97149 0.98990 0.96309 1.83931 1.16349 1.35002 1.71304 0.90597 0.90043 0.89888 0.83943 0.83929 0.83836 0.92305 0.96625 0.95571 0.96843 0.92962 0.89510 0.90225 0.91926 0.90630 0.91712 0.91267 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.42 36.00 0.38 -0.32 16 2 C -0.02 -0.31 7.32 -35.62 -0.26 -0.57 16 3 C -0.21 -2.86 10.81 -39.70 -0.43 -3.29 16 4 C -0.21 -3.03 10.80 -39.70 -0.43 -3.46 16 5 C -0.02 -0.38 5.93 -35.62 -0.21 -0.59 16 6 C 0.18 2.68 2.18 -68.87 -0.15 2.53 16 7 H 0.10 1.49 7.55 -51.93 -0.39 1.10 16 8 N -0.68 -12.38 6.02 -107.95 -0.65 -13.03 16 9 C 0.07 1.42 5.45 -3.82 -0.02 1.40 16 10 C 0.03 0.75 5.28 -27.88 -0.15 0.60 16 11 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.71 5.46 -17.81 -0.10 1.61 16 14 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 15 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.10 -1.24 3.30 -89.81 -0.30 -1.53 16 20 C -0.13 -1.47 7.61 -25.83 -0.20 -1.66 16 21 C -0.15 -1.52 8.09 -25.82 -0.21 -1.73 16 22 C -0.11 -1.44 7.45 -25.92 -0.19 -1.63 16 23 O -0.17 -2.75 10.08 5.71 0.06 -2.69 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 28 H 0.14 1.77 8.06 -52.48 -0.42 1.34 16 29 H 0.34 6.47 8.07 -39.29 -0.32 6.15 16 30 H 0.06 1.25 7.93 -51.93 -0.41 0.83 16 31 H 0.02 0.35 8.11 -51.93 -0.42 -0.07 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 0.83 8.00 -51.93 -0.42 0.42 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.13 8.10 -51.93 -0.42 0.70 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -31.19 340.78 -9.31 -40.51 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.99 Total: 3.69 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -2.58 Total: -24.03 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.09 Total: -39.56 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: 0.06 Total: -2.69 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.19 -9.31 -40.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349718111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.147 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds