Wall clock time and date at job start Mon Mar 30 2020 00:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34520 * 125.79145 * 2 1 4 4 C 1.41378 * 106.83948 * 179.75393 * 3 2 1 5 5 C 1.34521 * 106.84228 * 0.37454 * 4 3 2 6 6 C 1.50697 * 125.78897 * 179.88949 * 5 4 3 7 7 H 1.09003 * 109.47373 * 339.71681 * 6 5 4 8 8 N 1.46897 * 109.47067 * 219.71444 * 6 5 4 9 9 C 1.46904 * 110.99938 * 85.63247 * 8 6 5 10 10 C 1.53002 * 109.47276 * 174.80742 * 9 8 6 11 11 C 1.50694 * 109.47049 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00459 * 359.97438 * 11 10 9 13 13 C 1.37886 * 120.00132 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99396 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00324 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46971 * 59.99883 * 15 13 11 17 17 H 1.48495 * 109.46999 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46916 * 299.99709 * 15 13 11 19 19 C 1.53003 * 109.47174 * 99.71645 * 6 5 4 20 20 C 1.53777 * 113.61357 * 279.77901 * 19 6 5 21 21 C 1.53960 * 87.01670 * 220.04904 * 20 19 6 22 22 C 1.53778 * 113.61184 * 182.16679 * 19 6 5 23 23 O 1.34303 * 125.78786 * 179.97438 * 2 1 3 24 24 H 1.08991 * 109.47664 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47028 * 299.99736 * 1 2 3 26 26 H 1.09003 * 109.46897 * 59.99473 * 1 2 3 27 27 H 1.07998 * 126.57653 * 0.02562 * 3 2 1 28 28 H 1.08003 * 126.58153 * 180.24028 * 4 3 2 29 29 H 1.00895 * 111.00129 * 321.68268 * 8 6 5 30 30 H 1.08999 * 109.47027 * 54.80853 * 9 8 6 31 31 H 1.08994 * 109.47172 * 294.80980 * 9 8 6 32 32 H 1.09004 * 109.47092 * 300.00070 * 10 9 8 33 33 H 1.08999 * 109.47002 * 60.00096 * 10 9 8 34 34 H 0.97005 * 119.99409 * 180.02562 * 14 13 11 35 35 H 1.08997 * 112.84846 * 50.97245 * 19 6 5 36 36 H 1.09007 * 113.61386 * 334.56151 * 20 19 6 37 37 H 1.09002 * 113.61776 * 105.46913 * 20 19 6 38 38 H 1.09002 * 113.53447 * 270.80561 * 21 20 19 39 39 H 1.08997 * 113.74164 * 139.94801 * 21 20 19 40 40 H 1.08998 * 113.61518 * 254.52981 * 22 19 6 41 41 H 1.09002 * 113.61821 * 25.43844 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6308 0.6320 0.0058 5 6 3.5813 -0.7123 0.0006 6 6 4.7705 -1.6380 0.0015 7 1 5.6507 -1.0992 -0.3495 8 7 4.5058 -2.7761 -0.8887 9 6 4.8574 -2.4511 -2.2775 10 6 4.6913 -3.6966 -3.1505 11 6 5.0526 -3.3633 -4.5750 12 1 5.3687 -2.3631 -4.8322 13 6 4.9787 -4.3351 -5.5504 14 7 4.5934 -5.5529 -5.2374 15 14 5.4259 -3.9218 -7.3164 16 1 6.8365 -3.4612 -7.3750 17 1 5.2648 -5.1307 -8.1636 18 1 4.5325 -2.8452 -7.8143 19 6 5.0182 -2.1487 1.4224 20 6 5.7711 -1.1475 2.3143 21 6 6.5497 -2.3530 2.8720 22 6 6.2480 -3.0641 1.5422 23 8 2.2924 -1.0894 0.0005 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.9666 2.1204 0.0004 28 1 4.5213 1.2432 0.0110 29 1 3.5441 -3.0733 -0.8193 30 1 5.8926 -2.1127 -2.3205 31 1 4.2014 -1.6611 -2.6430 32 1 5.3473 -4.4866 -2.7849 33 1 3.6561 -4.0350 -3.1075 34 1 4.5418 -6.2367 -5.9235 35 1 4.1216 -2.5589 1.8870 36 1 6.3923 -0.4469 1.7562 37 1 5.1365 -0.6571 3.0524 38 1 6.0722 -2.8184 3.7342 39 1 7.6098 -2.1553 3.0308 40 1 5.9978 -4.1186 1.6580 41 1 6.9999 -2.8883 0.7728 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349718111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:30 Heat of formation + Delta-G solvation = -2.193133 kcal Electronic energy + Delta-G solvation = -19843.275094 eV Core-core repulsion = 16916.932365 eV Total energy + Delta-G solvation = -2926.342729 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.58433 -39.97526 -37.23883 -35.11551 -34.11752 -33.12511 -31.53322 -28.91943 -26.76579 -26.25584 -25.73642 -23.08874 -22.93218 -22.32085 -20.99958 -20.19278 -18.54692 -17.98992 -17.23268 -16.67392 -16.38280 -16.27679 -15.74502 -15.42754 -14.84809 -14.33141 -14.24070 -13.90335 -13.87616 -13.77528 -13.73155 -13.24735 -13.19707 -12.87986 -12.79733 -12.70912 -12.54434 -12.41747 -12.09300 -11.67218 -11.39916 -11.32404 -11.15300 -11.02925 -10.77993 -10.57311 -9.46401 -9.16405 -8.21071 -6.33084 0.75894 1.39097 1.42700 1.50707 1.67067 1.94635 2.39674 3.12065 3.19163 3.55604 3.83635 3.89392 3.94776 4.06383 4.13188 4.19711 4.30747 4.42954 4.53299 4.54187 4.64038 4.69540 4.83207 4.87424 4.90707 4.94567 4.96411 5.02156 5.05706 5.13438 5.23264 5.27669 5.39633 5.43370 5.62864 5.64781 5.66226 5.75648 6.03293 6.15624 6.30493 6.40281 6.83227 7.36042 8.90980 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.005156 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.200526 B = 5428.797047 C = 6683.384293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.034 4.034 3 C -0.222 4.222 4 C -0.211 4.211 5 C -0.051 4.051 6 C 0.181 3.819 7 H 0.103 0.897 8 N -0.678 5.678 9 C 0.088 3.912 10 C 0.036 3.964 11 C -0.547 4.547 12 H 0.059 0.941 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.967 3.033 16 H -0.265 1.265 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.133 4.133 22 C -0.121 4.121 23 O -0.195 6.195 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.169 0.831 28 H 0.160 0.840 29 H 0.338 0.662 30 H 0.065 0.935 31 H 0.007 0.993 32 H -0.002 1.002 33 H -0.015 1.015 34 H 0.264 0.736 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 13.076 15.915 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.241 4.241 4 C -0.231 4.231 5 C -0.103 4.103 6 C 0.071 3.929 7 H 0.121 0.879 8 N -0.306 5.306 9 C -0.041 4.041 10 C -0.001 4.001 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.791 3.209 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.116 4.116 20 C -0.162 4.162 21 C -0.171 4.171 22 C -0.159 4.159 23 O -0.092 6.092 24 H 0.092 0.908 25 H 0.125 0.875 26 H 0.115 0.885 27 H 0.186 0.814 28 H 0.178 0.822 29 H 0.156 0.844 30 H 0.083 0.917 31 H 0.025 0.975 32 H 0.017 0.983 33 H 0.003 0.997 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.265 12.281 15.968 20.271 hybrid contribution -0.660 0.503 -1.378 1.609 sum -2.925 12.784 14.590 19.618 Atomic orbital electron populations 1.20458 0.82845 1.04459 1.05028 1.23245 0.95592 0.83944 1.05588 1.21846 0.92376 1.00288 1.09541 1.21852 0.99167 0.93633 1.08466 1.23713 0.83764 0.96111 1.06666 1.20515 0.90470 0.87312 0.94625 0.87869 1.60573 1.28525 1.34364 1.07134 1.21804 0.98903 0.96741 0.86603 1.18864 0.94720 0.93214 0.93330 1.21560 1.45658 0.96848 0.94430 0.92288 1.25978 0.94901 0.94713 1.04005 1.70111 1.48319 1.03329 1.35329 0.85473 0.79242 0.77730 0.78428 1.18960 1.20627 1.19300 1.22537 0.98222 0.98566 0.92285 1.22932 0.98492 0.96363 0.98424 1.22845 1.00956 0.96512 0.96759 1.22710 0.96854 0.98554 0.97780 1.83916 1.16904 1.36464 1.71933 0.90827 0.87494 0.88515 0.81355 0.82208 0.84421 0.91681 0.97460 0.98336 0.99658 0.92693 0.90333 0.89467 0.91109 0.89664 0.90313 0.92343 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.42 71.24 0.74 -0.52 16 2 C -0.03 -0.90 7.32 24.83 0.18 -0.72 16 3 C -0.22 -5.53 10.81 22.19 0.24 -5.29 16 4 C -0.21 -5.75 10.80 22.19 0.24 -5.51 16 5 C -0.05 -1.57 5.93 24.83 0.15 -1.43 16 6 C 0.18 5.50 2.18 44.17 0.10 5.59 16 7 H 0.10 3.03 7.55 -2.39 -0.02 3.01 16 8 N -0.68 -25.65 6.02 -495.45 -2.98 -28.63 16 9 C 0.09 3.92 5.45 86.30 0.47 4.39 16 10 C 0.04 2.01 5.28 29.85 0.16 2.17 16 11 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 13 C 0.00 0.13 5.46 84.66 0.46 0.59 16 14 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 15 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 16 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 C -0.10 -2.50 3.30 -10.27 -0.03 -2.53 16 20 C -0.12 -2.48 7.61 31.18 0.24 -2.24 16 21 C -0.13 -2.53 8.09 31.18 0.25 -2.27 16 22 C -0.12 -3.03 7.45 31.12 0.23 -2.80 16 23 O -0.19 -6.35 10.08 -2.48 -0.02 -6.37 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 28 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.34 13.38 8.07 -89.70 -0.72 12.66 16 30 H 0.06 2.79 7.93 -2.39 -0.02 2.77 16 31 H 0.01 0.33 8.11 -2.39 -0.02 0.31 16 32 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 33 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 1.63 8.00 -2.38 -0.02 1.61 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.99 8.10 -2.39 -0.02 1.98 16 Total: -1.00 -68.04 340.78 3.23 -64.81 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.27 Total: 23.35 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 3.66 Total: -42.48 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -2.70 Total: -86.34 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.02 Total: -6.37 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -68.04 3.23 -64.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349718111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.615 kcal (2) G-P(sol) polarization free energy of solvation -68.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds