Wall clock time and date at job start Mon Mar 30 2020 00:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48501 * 109.47186 * 275.53154 * 3 2 1 5 5 H 1.48491 * 109.47317 * 35.53279 * 3 2 1 6 6 H 1.48506 * 109.46837 * 155.53457 * 3 2 1 7 7 C 1.37879 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00138 * 348.84666 * 7 2 1 9 9 C 1.50700 * 119.99868 * 168.84355 * 7 2 1 10 10 C 1.53004 * 115.55163 * 323.05435 * 9 7 2 11 11 N 1.46500 * 109.46859 * 304.56896 * 10 9 7 12 12 C 1.34777 * 119.99753 * 184.94968 * 11 10 9 13 13 O 1.21611 * 119.99987 * 4.99633 * 12 11 10 14 14 C 1.47103 * 119.99842 * 184.99595 * 12 11 10 15 15 C 1.31857 * 119.77457 * 174.51388 * 14 12 11 16 16 C 1.51409 * 120.08216 * 180.15664 * 15 14 12 17 17 C 1.53040 * 108.72719 * 71.40246 * 16 15 14 18 18 C 1.51781 * 110.80344 * 274.19616 * 17 16 15 19 19 C 1.51777 * 113.84626 * 66.93969 * 18 17 16 20 20 C 1.51407 * 119.85259 * 354.38738 * 14 12 11 21 21 C 1.53005 * 117.49903 * 108.72018 * 9 7 2 22 22 C 1.53002 * 117.49881 * 177.38325 * 9 7 2 23 23 H 0.97008 * 119.99826 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46853 * 184.56623 * 10 9 7 25 25 H 1.09002 * 109.47051 * 64.56847 * 10 9 7 26 26 H 0.97001 * 119.99825 * 4.94804 * 11 10 9 27 27 H 1.07997 * 120.06566 * 359.90272 * 15 14 12 28 28 H 1.08994 * 109.62254 * 311.57934 * 16 15 14 29 29 H 1.09004 * 109.62048 * 191.21350 * 16 15 14 30 30 H 1.08999 * 109.20609 * 34.53335 * 17 16 15 31 31 H 1.08999 * 109.20827 * 153.89751 * 17 16 15 32 32 H 1.09004 * 108.60608 * 188.06550 * 18 17 16 33 33 H 1.09000 * 108.61097 * 305.94737 * 18 17 16 34 34 H 1.09003 * 109.21281 * 53.39834 * 19 18 17 35 35 H 1.09000 * 109.21303 * 172.75900 * 19 18 17 36 36 H 1.08999 * 109.62013 * 348.65828 * 20 14 12 37 37 H 1.09001 * 109.61496 * 228.11504 * 20 14 12 38 38 H 1.08998 * 117.50118 * 215.00304 * 21 9 7 39 39 H 1.08998 * 117.49421 * 0.03053 * 21 9 7 40 40 H 1.08998 * 117.49870 * 359.97417 * 22 9 7 41 41 H 1.08999 * 117.49720 * 144.98257 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3798 2.1139 -1.3936 5 1 1.5100 2.6160 0.8136 6 1 3.6003 1.4091 0.5799 7 6 2.0044 -1.1941 -0.0005 8 1 1.4797 -2.1207 0.1800 9 6 3.4901 -1.2064 -0.2531 10 6 3.9926 -0.1936 -1.2839 11 7 3.2730 -0.3833 -2.5458 12 6 3.6193 0.3336 -3.6333 13 8 4.5858 1.0706 -3.5934 14 6 2.8280 0.2245 -4.8687 15 6 3.1036 1.0065 -5.8940 16 6 2.2914 0.9025 -7.1675 17 6 0.8959 1.4749 -6.9084 18 6 -0.0216 0.4154 -6.3257 19 6 0.3707 -0.0361 -4.9308 20 6 1.7043 -0.7863 -4.9571 21 6 4.4055 -1.5219 0.9316 22 6 4.2079 -2.5556 -0.1801 23 1 -0.4850 0.8401 0.0004 24 1 5.0599 -0.3418 -1.4484 25 1 3.8188 0.8172 -0.9149 26 1 2.5473 -1.0248 -2.5986 27 1 3.9066 1.7254 -5.8256 28 1 2.2089 -0.1429 -7.4647 29 1 2.7787 1.4709 -7.9598 30 1 0.9738 2.3064 -6.2081 31 1 0.4760 1.8350 -7.8476 32 1 -1.0352 0.8147 -6.2899 33 1 -0.0138 -0.4524 -6.9852 34 1 0.4627 0.8364 -4.2839 35 1 -0.4029 -0.6949 -4.5362 36 1 1.7576 -1.4681 -4.1083 37 1 1.7899 -1.3482 -5.8872 38 1 5.3657 -1.0080 0.9766 39 1 3.9330 -1.7211 1.8935 40 1 3.6058 -3.4342 0.0510 41 1 5.0380 -2.7217 -0.8667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356333986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:33 Heat of formation + Delta-G solvation = -23.738672 kcal Electronic energy + Delta-G solvation = -20736.680732 eV Core-core repulsion = 17809.403717 eV Total energy + Delta-G solvation = -2927.277014 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19222 -39.22862 -38.48206 -35.18223 -34.37805 -33.49759 -32.78316 -28.96501 -27.36040 -26.43815 -24.94020 -23.18396 -22.22911 -21.27731 -21.16740 -19.52971 -18.44441 -18.01970 -17.63162 -17.13710 -16.00396 -15.89394 -15.74800 -15.32068 -15.06153 -14.85126 -14.53644 -14.24963 -14.07863 -13.91396 -13.78416 -13.09538 -12.93242 -12.60494 -12.58177 -12.18212 -12.12772 -11.86660 -11.60056 -11.56010 -11.50935 -11.33364 -11.31192 -10.89766 -10.78853 -10.41259 -10.11141 -9.77870 -8.40667 -6.34588 0.42171 1.21859 1.29559 1.32107 2.15478 2.22182 2.34830 2.84608 3.42401 3.67287 3.75917 3.91506 3.98044 4.09678 4.12265 4.15580 4.22512 4.41191 4.43273 4.46218 4.57350 4.72065 4.78105 4.82702 4.86338 4.89298 4.92759 4.94757 5.18484 5.20347 5.24577 5.28915 5.35172 5.43414 5.49400 5.50972 5.55234 5.62479 5.68335 6.26056 6.59388 6.69825 7.20872 7.26281 8.73815 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.007056 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.803274 B = 3967.098356 C = 4377.133406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.053 3.947 3 Si 0.926 3.074 4 H -0.295 1.295 5 H -0.303 1.303 6 H -0.252 1.252 7 C -0.478 4.478 8 H 0.053 0.947 9 C -0.040 4.040 10 C 0.142 3.858 11 N -0.697 5.697 12 C 0.534 3.466 13 O -0.602 6.602 14 C -0.192 4.192 15 C -0.066 4.066 16 C -0.087 4.087 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.073 4.073 21 C -0.191 4.191 22 C -0.160 4.160 23 H 0.266 0.734 24 H 0.067 0.933 25 H 0.036 0.964 26 H 0.414 0.586 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -1.042 -14.540 14.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.147 4.147 3 Si 0.758 3.242 4 H -0.222 1.222 5 H -0.232 1.232 6 H -0.177 1.177 7 C -0.515 4.515 8 H 0.071 0.929 9 C -0.041 4.041 10 C 0.019 3.981 11 N -0.348 5.348 12 C 0.325 3.675 13 O -0.486 6.486 14 C -0.195 4.195 15 C -0.086 4.086 16 C -0.124 4.124 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.110 4.110 21 C -0.229 4.229 22 C -0.197 4.197 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.252 0.748 27 H 0.126 0.874 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.726 -0.448 -14.453 14.715 hybrid contribution -0.026 0.885 0.854 1.230 sum 2.700 0.437 -13.599 13.871 Atomic orbital electron populations 1.69977 1.07283 1.27714 1.50799 1.25293 0.94744 1.00632 0.94065 0.86333 0.79235 0.81493 0.77123 1.22246 1.23153 1.17681 1.20387 0.89716 0.93539 1.47894 0.92857 1.19468 0.93077 0.95523 0.96025 1.21192 0.95387 0.97704 0.83833 1.45957 1.37265 1.42091 1.09438 1.19188 0.84051 0.79224 0.85076 1.90668 1.30450 1.41959 1.85565 1.21358 1.00704 1.04084 0.93376 1.23636 0.96167 0.94136 0.94615 1.21026 0.94406 1.03712 0.93248 1.21284 0.94172 0.97926 1.01671 1.21131 0.99298 0.99690 0.95048 1.21271 0.96451 0.99394 0.98247 1.20763 0.91265 0.95369 1.03617 1.23143 1.00758 1.04536 0.94454 1.22868 1.02249 0.92751 1.01864 0.92419 0.91528 0.94698 0.74761 0.87352 0.88495 0.88732 0.93902 0.88823 0.91732 0.89887 0.95183 0.91354 0.92153 0.87420 0.89187 0.89496 0.89366 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.77 13.96 21.45 0.30 -53.47 16 2 C 0.05 2.96 5.41 84.66 0.46 3.41 16 3 Si 0.93 46.99 24.02 68.60 1.65 48.64 16 4 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 5 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 6 H -0.25 -12.17 6.38 99.48 0.63 -11.54 16 7 C -0.48 -25.23 8.85 25.60 0.23 -25.00 16 8 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 9 C -0.04 -1.77 1.41 -52.92 -0.07 -1.85 16 10 C 0.14 6.39 4.36 86.38 0.38 6.76 16 11 N -0.70 -29.77 5.09 -466.70 -2.37 -32.15 16 12 C 0.53 22.43 7.73 86.57 0.67 23.10 16 13 O -0.60 -28.79 16.18 -4.07 -0.07 -28.86 16 14 C -0.19 -6.26 5.11 -18.12 -0.09 -6.36 16 15 C -0.07 -1.81 8.95 25.10 0.22 -1.58 16 16 C -0.09 -1.56 5.61 30.09 0.17 -1.39 16 17 C -0.11 -2.07 5.66 30.21 0.17 -1.90 16 18 C -0.11 -2.23 5.27 29.79 0.16 -2.08 16 19 C -0.12 -3.17 5.66 30.20 0.17 -3.00 16 20 C -0.07 -1.98 5.33 30.08 0.16 -1.82 16 21 C -0.19 -7.43 9.96 30.62 0.30 -7.13 16 22 C -0.16 -5.93 9.93 30.62 0.30 -5.62 16 23 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 24 H 0.07 2.82 8.06 -2.39 -0.02 2.80 16 25 H 0.04 1.74 2.58 -2.39 -0.01 1.73 16 26 H 0.41 17.18 5.81 -92.71 -0.54 16.64 16 27 H 0.11 3.29 7.47 -2.91 -0.02 3.26 16 28 H 0.10 1.44 6.74 -2.39 -0.02 1.43 16 29 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.04 0.98 7.86 -2.39 -0.02 0.96 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.26 7.87 -2.39 -0.02 1.24 16 34 H 0.03 1.01 7.85 -2.39 -0.02 1.00 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 1.80 6.08 -2.39 -0.01 1.79 16 37 H 0.11 2.20 6.74 -2.39 -0.02 2.19 16 38 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 40 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -65.93 317.63 3.14 -62.78 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.41 Total: 27.51 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 3.23 Total: -24.45 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.07 Total: -85.62 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.07 Total: -28.86 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.65 Total: 48.64 kcal Total: -65.93 3.14 -62.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356333986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.044 kcal (2) G-P(sol) polarization free energy of solvation -65.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds