Wall clock time and date at job start Mon Mar 30 2020 00:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.47016 * 2 1 4 4 C 1.38237 * 119.99807 * 89.99950 * 3 2 1 5 5 C 1.38231 * 120.00152 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99689 * 359.96359 * 5 4 3 7 7 C 1.50699 * 119.99968 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47523 * 19.99369 * 7 6 5 9 9 C 1.53006 * 109.47053 * 259.99830 * 7 6 5 10 10 O 1.42906 * 109.46752 * 304.99558 * 9 7 6 11 11 N 1.46897 * 109.47459 * 139.99393 * 7 6 5 12 12 C 1.46895 * 111.00296 * 204.99681 * 11 7 6 13 13 C 1.53000 * 109.47312 * 179.97438 * 12 11 7 14 14 C 1.50701 * 109.47483 * 180.02562 * 13 12 11 15 15 H 1.08009 * 119.99823 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00174 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00029 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47219 * 90.00180 * 18 16 14 20 20 H 1.48501 * 109.47128 * 210.00373 * 18 16 14 21 21 H 1.48509 * 109.47181 * 330.00086 * 18 16 14 22 22 C 1.38234 * 120.00366 * 0.26668 * 6 5 4 23 23 C 1.38230 * 120.00005 * 269.98181 * 3 2 1 24 24 H 1.09001 * 109.46893 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47041 * 299.99704 * 1 2 3 26 26 H 1.09001 * 109.46799 * 59.99860 * 1 2 3 27 27 H 1.09000 * 109.47041 * 240.00296 * 2 1 3 28 28 H 1.08991 * 109.47211 * 120.00461 * 2 1 3 29 29 H 1.08002 * 120.00060 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.99967 * 179.97438 * 5 4 3 31 31 H 1.08993 * 109.46955 * 64.99976 * 9 7 6 32 32 H 1.09000 * 109.47050 * 184.99805 * 9 7 6 33 33 H 0.96698 * 113.99404 * 180.02562 * 10 9 7 34 34 H 1.00910 * 110.99660 * 81.04716 * 11 7 6 35 35 H 1.09003 * 109.47491 * 300.00437 * 12 11 7 36 36 H 1.08999 * 109.46825 * 60.00263 * 12 11 7 37 37 H 1.09003 * 109.47284 * 300.00668 * 13 12 11 38 38 H 1.08999 * 109.46876 * 60.00398 * 13 12 11 39 39 H 0.96995 * 120.00006 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.00278 * 179.73146 * 22 6 5 41 41 H 1.07995 * 120.00373 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7240 3.3756 1.1973 6 6 2.9556 4.0268 0.0001 7 6 3.4590 5.4472 0.0002 8 1 3.9110 5.6726 0.9661 9 6 2.2905 6.4024 -0.2513 10 8 1.6257 6.0335 -1.4613 11 7 4.4624 5.6112 -1.0601 12 6 5.3804 6.7153 -0.7500 13 6 6.4089 6.8545 -1.8742 14 6 7.3510 7.9868 -1.5558 15 1 7.2282 8.5510 -0.6431 16 6 8.3691 8.3031 -2.4301 17 7 9.1916 9.2909 -2.1520 18 14 8.5811 7.3277 -4.0090 19 1 7.7885 7.9618 -5.0929 20 1 10.0161 7.3096 -4.3908 21 1 8.1073 5.9360 -3.7986 22 6 2.7207 3.3768 -1.1970 23 6 2.2631 2.0723 -1.1971 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.0823 1.5635 2.1325 30 1 2.9036 3.8847 2.1326 31 1 1.5889 6.3451 0.5808 32 1 2.6669 7.4215 -0.3397 33 1 0.8727 6.5978 -1.6841 34 1 4.0214 5.7487 -1.9572 35 1 4.8151 7.6427 -0.6573 36 1 5.8944 6.5077 0.1885 37 1 6.9741 5.9270 -1.9665 38 1 5.8952 7.0618 -2.8129 39 1 9.9076 9.5137 -2.7673 40 1 2.8976 3.8871 -2.1323 41 1 2.0838 1.5631 -2.1324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359625890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:08 Heat of formation + Delta-G solvation = -65.402818 kcal Electronic energy + Delta-G solvation = -19411.870548 eV Core-core repulsion = 16482.786841 eV Total energy + Delta-G solvation = -2929.083707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63742 -38.67589 -36.68360 -35.40233 -34.55356 -32.52089 -31.71669 -30.19899 -28.39804 -25.93328 -24.85232 -23.56746 -22.54114 -22.19684 -21.00096 -18.98733 -18.44388 -17.29156 -16.55233 -16.47324 -16.26487 -16.05475 -15.70119 -15.10551 -14.85790 -14.61359 -14.56493 -14.35611 -14.05055 -13.77061 -13.58033 -13.27671 -13.04497 -12.95473 -12.58591 -12.38347 -12.00384 -11.97914 -11.81813 -11.75773 -11.57104 -11.50372 -11.42897 -10.91516 -10.77716 -9.68322 -9.38090 -9.20305 -8.31192 -6.35438 0.53861 0.65720 1.35238 1.37932 1.51226 2.35814 2.87885 3.04465 3.23103 3.56604 3.82481 3.97649 4.03749 4.13582 4.27010 4.34816 4.40915 4.42465 4.54473 4.57027 4.57810 4.67391 4.75507 4.81553 4.84266 4.95615 5.11718 5.13879 5.23356 5.27944 5.33791 5.42013 5.47053 5.61887 5.64157 5.82552 5.84517 6.18259 6.23607 6.27204 6.50520 6.72829 6.87349 7.29653 8.85371 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.003838 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.329031 B = 7292.908243 C = 7650.824521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.126 4.126 6 C -0.076 4.076 7 C 0.122 3.878 8 H 0.095 0.905 9 C 0.057 3.943 10 O -0.576 6.576 11 N -0.684 5.684 12 C 0.088 3.912 13 C -0.003 4.003 14 C -0.532 4.532 15 H 0.035 0.965 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.952 3.048 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.251 1.251 22 C -0.085 4.085 23 C -0.136 4.136 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.394 0.606 34 H 0.345 0.655 35 H 0.021 0.979 36 H 0.057 0.943 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.267 0.733 40 H 0.111 0.889 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.796 -16.441 4.587 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.144 4.144 6 C -0.076 4.076 7 C 0.012 3.988 8 H 0.113 0.887 9 C -0.023 4.023 10 O -0.384 6.384 11 N -0.315 5.315 12 C -0.041 4.041 13 C -0.041 4.041 14 C -0.571 4.571 15 H 0.053 0.947 16 C -0.190 4.190 17 N -0.591 5.591 18 Si 0.775 3.225 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.175 1.175 22 C -0.104 4.104 23 C -0.154 4.154 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.243 0.757 34 H 0.165 0.835 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.771 -17.284 4.781 26.693 hybrid contribution -0.291 1.626 -0.747 1.813 sum -20.062 -15.658 4.033 25.767 Atomic orbital electron populations 1.21719 0.94155 1.02309 1.01796 1.20563 0.96594 0.91458 1.03361 1.20138 0.99068 0.97192 0.92935 1.21161 1.00589 0.94650 0.98243 1.21191 1.00245 0.95487 0.97468 1.19661 0.99235 0.95002 0.93737 1.20666 0.89953 0.92010 0.96144 0.88696 1.22729 0.94862 0.96799 0.87862 1.86442 1.49723 1.60011 1.42224 1.60539 1.19941 1.45583 1.05466 1.21673 0.93146 0.90552 0.98736 1.19412 0.94261 0.95316 0.95111 1.21398 1.13193 1.15909 1.06576 0.94710 1.25967 0.95023 0.95922 1.02123 1.70057 1.18782 1.31194 1.39019 0.85632 0.77443 0.80348 0.79059 1.19041 1.20850 1.17493 1.20902 0.97181 0.94444 0.97835 1.21201 1.01016 0.94872 0.98305 0.91080 0.92790 0.93234 0.90772 0.90223 0.84447 0.85079 0.91692 0.93734 0.75687 0.83543 0.96099 0.92438 0.96233 0.96633 0.92411 0.87055 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.90 71.98 0.71 -1.18 16 2 C -0.08 -1.27 6.06 29.85 0.18 -1.09 16 3 C -0.09 -1.98 5.13 -19.87 -0.10 -2.08 16 4 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 5 C -0.13 -2.96 9.67 22.27 0.22 -2.75 16 6 C -0.08 -2.06 4.83 -19.87 -0.10 -2.15 16 7 C 0.12 3.42 2.65 44.17 0.12 3.53 16 8 H 0.10 2.59 7.66 -2.39 -0.02 2.57 16 9 C 0.06 1.33 6.71 71.98 0.48 1.81 16 10 O -0.58 -12.97 11.44 -148.98 -1.70 -14.68 16 11 N -0.68 -23.41 5.71 -495.45 -2.83 -26.24 16 12 C 0.09 3.55 5.42 86.30 0.47 4.02 16 13 C 0.00 -0.15 4.30 29.85 0.13 -0.03 16 14 C -0.53 -31.36 9.66 25.60 0.25 -31.11 16 15 H 0.03 2.22 7.99 -2.91 -0.02 2.20 16 16 C 0.01 0.39 5.47 84.65 0.46 0.86 16 17 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 18 Si 0.95 45.60 27.47 68.60 1.88 47.48 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 22 C -0.09 -2.36 8.32 22.27 0.19 -2.17 16 23 C -0.14 -3.27 9.70 22.27 0.22 -3.06 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 28 H 0.08 1.05 8.08 -2.39 -0.02 1.04 16 29 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.13 2.59 8.04 -2.91 -0.02 2.57 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.09 7.35 -2.39 -0.02 1.07 16 33 H 0.39 5.37 9.12 -74.06 -0.68 4.70 16 34 H 0.35 11.74 7.29 -89.69 -0.65 11.08 16 35 H 0.02 0.84 7.36 -2.39 -0.02 0.82 16 36 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 37 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 38 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 39 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.11 3.28 6.99 -2.91 -0.02 3.26 16 41 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -69.33 334.65 0.71 -68.62 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.37 Total: 22.76 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 3.43 Total: -37.90 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -2.53 Total: -86.29 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.70 Total: -14.68 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Total: -69.33 0.71 -68.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359625890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.217 kcal (2) G-P(sol) polarization free energy of solvation -69.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds