Wall clock time and date at job start Sun Mar 29 2020 23:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48504 * 109.47019 * 270.00143 * 3 2 1 5 5 H 1.48497 * 109.47006 * 29.99934 * 3 2 1 6 6 H 1.48502 * 109.47203 * 150.00349 * 3 2 1 7 7 C 1.37876 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00061 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47257 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47257 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99457 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00104 * 180.02562 * 11 10 9 14 14 C 1.47296 * 135.89007 * 359.97438 * 13 11 10 15 15 C 1.52337 * 87.64242 * 205.81885 * 14 13 11 16 16 C 1.52633 * 122.03167 * 210.04232 * 15 14 13 17 17 C 1.54005 * 86.67418 * 207.82834 * 16 15 14 18 18 C 1.52629 * 122.03555 * 99.44754 * 15 14 13 19 19 C 1.47299 * 135.88616 * 179.62781 * 13 11 10 20 20 H 1.08997 * 113.52482 * 39.49161 * 19 13 11 21 21 C 1.52996 * 113.52177 * 268.87136 * 19 13 11 22 22 C 1.52998 * 117.49798 * 148.13114 * 21 19 13 23 23 C 1.52995 * 117.49639 * 79.50759 * 21 19 13 24 24 H 0.96997 * 120.00364 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47124 * 60.00007 * 9 7 2 26 26 H 1.08997 * 109.46897 * 300.00336 * 9 7 2 27 27 H 1.08996 * 109.47168 * 59.99699 * 10 9 7 28 28 H 1.09001 * 109.46604 * 299.99871 * 10 9 7 29 29 H 1.08999 * 113.52114 * 320.51114 * 14 13 11 30 30 H 1.09001 * 113.52291 * 91.12102 * 14 13 11 31 31 H 1.08997 * 113.67544 * 322.27016 * 16 15 14 32 32 H 1.08995 * 113.67597 * 93.38374 * 16 15 14 33 33 H 1.09007 * 113.56784 * 269.87823 * 17 16 15 34 34 H 1.08994 * 113.56760 * 139.12847 * 17 16 15 35 35 H 1.09005 * 113.67685 * 266.61420 * 18 15 14 36 36 H 1.08996 * 113.68291 * 37.71969 * 18 15 14 37 37 H 1.08998 * 115.55256 * 293.83933 * 21 19 13 38 38 H 1.09005 * 117.49987 * 0.02562 * 22 21 19 39 39 H 1.08993 * 117.50102 * 145.02064 * 22 21 19 40 40 H 1.09003 * 117.49940 * 214.97159 * 23 21 19 41 41 H 1.08993 * 117.50389 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9672 -0.0025 12 8 0.2791 -4.9671 -0.0024 13 7 2.1658 -6.1343 -0.0031 14 6 3.5825 -6.5376 -0.0038 15 6 3.1469 -7.8380 -0.6669 16 6 3.9034 -9.1469 -0.4568 17 6 3.3943 -9.5606 -1.8502 18 6 3.2690 -8.0598 -2.1721 19 6 1.8067 -7.5629 0.0029 20 1 0.9491 -7.7985 -0.6272 21 6 1.6926 -8.1579 1.4077 22 6 0.6762 -9.2819 1.6184 23 6 0.4039 -7.8877 2.1867 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.8727 -3.6047 0.8876 28 1 2.8713 -3.6038 -0.8923 29 1 4.2118 -5.9146 -0.6395 30 1 3.9960 -6.6757 0.9952 31 1 4.9852 -9.0237 -0.4048 32 1 3.5054 -9.7573 0.3537 33 1 2.4378 -10.0828 -1.8274 34 1 4.1431 -10.0745 -2.4529 35 1 2.3659 -7.8050 -2.7268 36 1 4.1707 -7.6284 -2.6065 37 1 2.6224 -8.2070 1.9745 38 1 0.0891 -9.5977 0.7560 39 1 0.9372 -10.0708 2.3237 40 1 0.4857 -7.7596 3.2661 41 1 -0.3629 -7.2864 1.6983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360600680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:31 Heat of formation + Delta-G solvation = 35.354370 kcal Electronic energy + Delta-G solvation = -20021.783567 eV Core-core repulsion = 17097.069020 eV Total energy + Delta-G solvation = -2924.714548 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31209 -38.22485 -36.91424 -35.20836 -33.41513 -31.00876 -28.49081 -26.47448 -26.00721 -25.24508 -22.92848 -22.34794 -21.76701 -20.67948 -18.63131 -17.95904 -16.90483 -16.06663 -15.84206 -15.70684 -15.21267 -14.59509 -14.42460 -14.32962 -14.12119 -13.45450 -12.81411 -12.59976 -12.25720 -12.13661 -12.01292 -11.60725 -11.55476 -11.42436 -11.10757 -10.91310 -10.81385 -10.63907 -10.59147 -10.41881 -10.32407 -9.98993 -9.92495 -9.62203 -9.12465 -8.91115 -8.37818 -8.28361 -5.93979 -3.98337 3.00370 3.29875 3.34606 3.40508 3.43395 3.81411 4.03281 4.33052 4.48390 4.54789 4.61475 4.78598 4.87474 4.90963 5.06017 5.08936 5.21121 5.35430 5.40859 5.53014 5.54408 5.56484 5.56831 5.68254 5.73618 5.77307 5.88938 5.99489 6.05485 6.09437 6.16698 6.19878 6.22420 6.28457 6.39421 6.94686 7.76590 7.88952 8.08845 8.15343 8.41179 8.81623 9.10078 9.64992 11.17060 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.004290 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.599325 B = 6525.549952 C = 7125.626044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.121 4.121 11 C 0.540 3.460 12 O -0.533 6.533 13 N -0.645 5.645 14 C 0.114 3.886 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.138 4.138 18 C -0.111 4.111 19 C 0.185 3.815 20 H 0.081 0.919 21 C -0.156 4.156 22 C -0.170 4.170 23 C -0.168 4.168 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.981 -21.675 -0.038 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.161 4.161 11 C 0.333 3.667 12 O -0.408 6.408 13 N -0.382 5.382 14 C -0.009 4.009 15 C -0.117 4.117 16 C -0.158 4.158 17 C -0.175 4.175 18 C -0.149 4.149 19 C 0.081 3.919 20 H 0.099 0.901 21 C -0.175 4.175 22 C -0.208 4.208 23 C -0.205 4.205 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.014 -21.272 -0.048 22.732 hybrid contribution 0.503 1.030 0.139 1.155 sum 8.517 -20.242 0.091 21.961 Atomic orbital electron populations 1.69996 1.06064 1.26561 1.50241 1.25018 0.94812 0.99194 0.95311 0.86592 0.79777 0.83520 0.78066 1.20662 1.21209 1.19888 1.21214 0.92905 0.90987 1.51339 0.92646 1.18910 0.93176 0.89345 0.98583 1.21810 1.00615 0.91401 1.02271 1.21227 0.87891 0.83720 0.73907 1.90665 1.14235 1.86621 1.49253 1.50034 1.08414 1.04529 1.75190 1.22742 0.84905 0.93120 1.00168 1.22607 0.96918 0.95056 0.97166 1.22637 0.99851 0.95410 0.97862 1.22831 1.01443 0.96260 0.97003 1.22560 1.02612 0.96074 0.93605 1.21379 0.96470 0.80853 0.93174 0.90090 1.22301 0.94921 1.03358 0.96956 1.22917 1.02579 0.91941 1.03370 1.22918 0.99224 0.98585 0.99769 0.92959 0.95845 0.95854 0.90476 0.90479 0.90364 0.90126 0.89622 0.90752 0.90236 0.91408 0.91134 0.89378 0.87489 0.88804 0.88728 0.88810 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.89 13.29 55.43 0.74 -27.15 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -15.28 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 10 C -0.12 -2.63 5.46 -27.88 -0.15 -2.79 16 11 C 0.54 11.34 8.08 -10.99 -0.09 11.25 16 12 O -0.53 -13.37 16.75 5.56 0.09 -13.27 16 13 N -0.64 -10.28 3.50 -177.16 -0.62 -10.90 16 14 C 0.11 1.33 7.89 -7.60 -0.06 1.27 16 15 C -0.12 -1.17 1.11 -155.60 -0.17 -1.35 16 16 C -0.12 -0.90 7.64 -26.39 -0.20 -1.10 16 17 C -0.14 -1.04 8.08 -25.71 -0.21 -1.24 16 18 C -0.11 -1.04 7.90 -26.40 -0.21 -1.25 16 19 C 0.19 2.40 4.26 -71.49 -0.30 2.09 16 20 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 21 C -0.16 -1.77 4.38 -90.63 -0.40 -2.17 16 22 C -0.17 -1.66 10.24 -26.73 -0.27 -1.94 16 23 C -0.17 -2.12 10.25 -26.73 -0.27 -2.39 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 25 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.83 7.77 -51.93 -0.40 0.42 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.54 7.40 -51.93 -0.38 0.15 16 33 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.11 1.10 7.76 -51.93 -0.40 0.69 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -34.08 339.51 -9.63 -43.71 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.07 Total: -1.79 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.87 Total: -12.66 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.12 Total: -38.05 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.08 -9.63 -43.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360600680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.065 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds