Wall clock time and date at job start Sun Mar 29 2020 23:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00716 * 2 1 4 4 H 1.48500 * 109.47169 * 239.99692 * 3 2 1 5 5 H 1.48504 * 109.47190 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47410 * 120.00094 * 3 2 1 7 7 C 1.37882 * 119.99219 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99734 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00275 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47337 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47337 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99716 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99989 * 179.97438 * 11 10 9 14 14 C 1.47775 * 134.37528 * 5.27181 * 13 11 10 15 15 C 1.52965 * 85.76216 * 203.89319 * 14 13 11 16 16 C 1.52794 * 121.30385 * 102.45113 * 15 14 13 17 17 C 1.53972 * 86.74681 * 101.24413 * 16 15 14 18 18 C 1.52803 * 121.30017 * 211.47073 * 15 14 13 19 19 C 1.47785 * 134.37224 * 185.29316 * 13 11 10 20 20 H 1.08997 * 113.82590 * 270.31621 * 19 13 11 21 21 C 1.53001 * 113.93634 * 41.88522 * 19 13 11 22 22 C 1.52999 * 117.49940 * 230.47171 * 21 19 13 23 23 C 1.52999 * 117.49810 * 161.81269 * 21 19 13 24 24 H 0.97003 * 119.99244 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47579 * 59.99580 * 9 7 2 26 26 H 1.09000 * 109.46897 * 299.99502 * 9 7 2 27 27 H 1.08997 * 109.47180 * 59.99273 * 10 9 7 28 28 H 1.09000 * 109.46669 * 299.99579 * 10 9 7 29 29 H 1.09000 * 113.83013 * 89.68212 * 14 13 11 30 30 H 1.09005 * 113.82395 * 318.10237 * 14 13 11 31 31 H 1.09002 * 113.67242 * 215.70970 * 16 15 14 32 32 H 1.09003 * 113.66788 * 346.77922 * 16 15 14 33 33 H 1.09002 * 113.57322 * 270.04059 * 17 16 15 34 34 H 1.08996 * 113.57694 * 139.25627 * 17 16 15 35 35 H 1.09001 * 113.67015 * 13.21025 * 18 15 14 36 36 H 1.08997 * 113.66802 * 144.29079 * 18 15 14 37 37 H 1.09002 * 115.55186 * 16.14377 * 21 19 13 38 38 H 1.09006 * 117.49706 * 0.02562 * 22 21 19 39 39 H 1.08998 * 117.49957 * 145.02102 * 22 21 19 40 40 H 1.08998 * 117.50082 * 214.98085 * 23 21 19 41 41 H 1.09004 * 117.50076 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6962 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2449 -3.6623 0.0018 11 6 1.4913 -4.9673 0.0012 12 8 0.2785 -4.9671 0.0003 13 7 2.1651 -6.1345 0.0016 14 6 3.5926 -6.5038 0.0997 15 6 3.1902 -7.7961 -0.6130 16 6 3.4691 -8.0019 -2.1011 17 6 4.6688 -8.8641 -1.6674 18 6 3.9205 -9.1112 -0.3445 19 6 1.7708 -7.5555 -0.0962 20 1 1.5677 -8.0234 0.8670 21 6 0.6806 -7.8271 -1.1348 22 6 -0.5357 -8.6397 -0.6863 23 6 0.5058 -9.2693 -1.6148 24 1 -0.4849 0.8401 -0.0004 25 1 0.6244 -2.5571 -0.8896 26 1 0.6238 -2.5567 0.8903 27 1 2.8709 -3.6042 0.8922 28 1 2.8722 -3.6050 -0.8878 29 1 3.9393 -6.6543 1.1220 30 1 4.2538 -5.8653 -0.4863 31 1 2.6911 -8.5633 -2.6186 32 1 3.7529 -7.0883 -2.6236 33 1 5.5920 -8.2972 -1.5467 34 1 4.7994 -9.7635 -2.2689 35 1 4.5646 -9.0825 0.5344 36 1 3.2699 -9.9854 -0.3665 37 1 0.5143 -7.0314 -1.8610 38 1 -0.5594 -8.9804 0.3489 39 1 -1.5021 -8.3788 -1.1176 40 1 0.2241 -9.4224 -2.6565 41 1 1.1677 -10.0246 -1.1910 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360600683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:34 Heat of formation + Delta-G solvation = 33.759580 kcal Electronic energy + Delta-G solvation = -20074.949766 eV Core-core repulsion = 17150.166063 eV Total energy + Delta-G solvation = -2924.783703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.15912 -38.20951 -36.73954 -35.24309 -33.40645 -30.99841 -28.31959 -26.71477 -25.92686 -25.29956 -23.02142 -22.23023 -21.52286 -20.56580 -18.59438 -18.18420 -16.83495 -16.09586 -15.75615 -15.67267 -15.16700 -14.63989 -14.34575 -14.16022 -14.14908 -13.52498 -12.63652 -12.59207 -12.30269 -12.15661 -12.12145 -11.60992 -11.51986 -11.44416 -11.13890 -10.89414 -10.81125 -10.71018 -10.59806 -10.43602 -10.30957 -9.91489 -9.76144 -9.61026 -9.11765 -8.84654 -8.36672 -8.27631 -5.93522 -3.97907 3.03526 3.30112 3.35892 3.40378 3.42315 3.79757 4.13947 4.37736 4.48699 4.54528 4.64675 4.76138 4.82324 4.97027 5.04701 5.17864 5.22362 5.39839 5.41172 5.46207 5.53094 5.58928 5.61892 5.67961 5.70846 5.81368 5.88415 5.99026 6.05467 6.09562 6.15591 6.21873 6.28048 6.30577 6.48936 6.95643 7.76744 7.89655 8.08977 8.13099 8.41731 8.84186 9.10467 9.65281 11.17471 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.004342 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.111947 B = 6447.339051 C = 7135.722185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.123 4.123 11 C 0.532 3.468 12 O -0.528 6.528 13 N -0.647 5.647 14 C 0.126 3.874 15 C -0.113 4.113 16 C -0.111 4.111 17 C -0.139 4.139 18 C -0.124 4.124 19 C 0.177 3.823 20 H 0.086 0.914 21 C -0.140 4.140 22 C -0.173 4.173 23 C -0.175 4.175 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.929 -21.511 -2.321 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.162 4.162 11 C 0.324 3.676 12 O -0.403 6.403 13 N -0.385 5.385 14 C 0.003 3.997 15 C -0.114 4.114 16 C -0.148 4.148 17 C -0.177 4.177 18 C -0.162 4.162 19 C 0.073 3.927 20 H 0.103 0.897 21 C -0.159 4.159 22 C -0.210 4.210 23 C -0.212 4.212 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.972 -21.136 -2.314 22.707 hybrid contribution 0.421 1.019 0.127 1.110 sum 8.393 -20.117 -2.188 21.907 Atomic orbital electron populations 1.69995 1.06060 1.26653 1.50151 1.25021 0.94819 0.99184 0.95313 0.86650 0.79546 0.83185 0.78531 1.20260 1.21269 1.20255 1.21180 0.92859 0.91019 1.51457 0.92711 1.18898 0.93173 0.89342 0.98558 1.21815 1.00618 0.91620 1.02190 1.21301 0.88044 0.84090 0.74153 1.90675 1.14175 1.86710 1.48738 1.50365 1.08185 1.04695 1.75240 1.22766 0.84412 0.92633 0.99862 1.23079 0.95115 0.95208 0.98019 1.22619 0.97936 1.00336 0.93919 1.22845 0.97608 1.00069 0.97132 1.22746 0.98761 0.96530 0.98202 1.22006 0.92646 0.81567 0.96439 0.89668 1.22196 0.97676 0.94653 1.01397 1.22961 0.94439 1.03896 0.99753 1.22921 1.03008 0.95477 0.99829 0.92915 0.95861 0.95891 0.90583 0.90505 0.89789 0.89782 0.89116 0.91158 0.90125 0.91481 0.91100 0.89780 0.87338 0.88970 0.88822 0.88866 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.90 13.29 55.43 0.74 -27.16 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -15.29 9.11 -34.44 -0.31 -15.61 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 10 C -0.12 -2.65 5.39 -27.88 -0.15 -2.80 16 11 C 0.53 11.10 7.93 -10.99 -0.09 11.02 16 12 O -0.53 -13.20 16.31 5.56 0.09 -13.11 16 13 N -0.65 -10.22 3.50 -175.95 -0.61 -10.83 16 14 C 0.13 1.44 8.38 -3.36 -0.03 1.41 16 15 C -0.11 -1.12 1.12 -154.93 -0.17 -1.30 16 16 C -0.11 -1.02 7.19 -26.33 -0.19 -1.21 16 17 C -0.14 -1.00 8.08 -25.73 -0.21 -1.21 16 18 C -0.12 -0.92 7.86 -26.32 -0.21 -1.13 16 19 C 0.18 2.28 4.25 -67.25 -0.29 1.99 16 20 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 21 C -0.14 -1.85 4.38 -90.62 -0.40 -2.24 16 22 C -0.17 -2.06 10.22 -26.69 -0.27 -2.33 16 23 C -0.17 -1.70 8.76 -26.69 -0.23 -1.93 16 24 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 27 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.83 6.28 -51.93 -0.33 0.50 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.57 7.61 -51.93 -0.40 0.18 16 37 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.09 1.03 8.13 -51.93 -0.42 0.61 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.76 7.61 -51.93 -0.40 0.37 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -34.15 335.87 -9.50 -43.65 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.99 Total: -1.77 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.76 Total: -12.79 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.12 Total: -37.99 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.15 -9.50 -43.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360600683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.412 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds