Wall clock time and date at job start Sun Mar 29 2020 23:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42901 * 114.00445 * 2 1 4 4 C 1.52999 * 109.47361 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47115 * 67.01953 * 4 3 2 6 6 C 1.46902 * 111.00145 * 289.89230 * 5 4 3 7 7 C 1.50702 * 109.47140 * 299.63630 * 6 5 4 8 8 H 1.07992 * 119.99863 * 354.97206 * 7 6 5 9 9 C 1.37879 * 119.99799 * 174.96491 * 7 6 5 10 10 N 1.31506 * 119.99738 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00207 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46989 * 89.99844 * 11 9 7 13 13 H 1.48493 * 109.47528 * 210.00013 * 11 9 7 14 14 H 1.48504 * 109.47118 * 330.00222 * 11 9 7 15 15 C 1.46903 * 110.99934 * 53.84643 * 5 4 3 16 16 C 1.53002 * 109.47009 * 66.04661 * 15 5 4 17 17 C 1.53776 * 113.61300 * 184.99987 * 16 15 5 18 18 C 1.53779 * 87.17236 * 220.06018 * 17 16 15 19 19 F 1.39905 * 113.61223 * 139.94270 * 18 17 16 20 20 F 1.39900 * 113.61684 * 270.83965 * 18 17 16 21 21 C 1.53779 * 87.08279 * 25.39326 * 18 17 16 22 22 H 1.09003 * 109.47474 * 300.00156 * 1 2 3 23 23 H 1.09008 * 109.47305 * 59.99724 * 1 2 3 24 24 H 1.08997 * 109.48025 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47012 * 60.00124 * 3 2 1 26 26 H 1.08997 * 109.47297 * 299.99769 * 3 2 1 27 27 H 1.09006 * 109.47169 * 307.01869 * 4 3 2 28 28 H 1.08996 * 109.47239 * 187.02133 * 4 3 2 29 29 H 1.08999 * 109.47113 * 59.63718 * 6 5 4 30 30 H 1.09000 * 109.47098 * 179.63811 * 6 5 4 31 31 H 0.97004 * 119.99930 * 180.02562 * 10 9 7 32 32 H 1.08994 * 109.47227 * 306.04385 * 15 5 4 33 33 H 1.09002 * 109.46865 * 186.04685 * 15 5 4 34 34 H 1.09005 * 112.90655 * 316.25156 * 16 15 5 35 35 H 1.09002 * 113.61561 * 105.46784 * 17 16 15 36 36 H 1.08997 * 113.61860 * 334.65204 * 17 16 15 37 37 H 1.09001 * 113.61401 * 89.11447 * 21 18 17 38 38 H 1.09000 * 113.61070 * 219.93898 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9814 0.6066 -1.2741 6 6 3.6039 -0.8098 -1.3707 7 6 4.2496 -1.5795 -0.2475 8 1 4.9415 -1.0849 0.4181 9 6 3.9570 -2.9151 -0.0696 10 7 4.5201 -3.5866 0.9109 11 14 2.7596 -3.7703 -1.2203 12 1 3.5026 -4.3420 -2.3720 13 1 2.0638 -4.8600 -0.4901 14 1 1.7606 -2.7886 -1.7139 15 6 3.4532 1.3710 -2.4120 16 6 4.0666 2.7727 -2.4135 17 6 3.4869 3.6975 -3.4968 18 6 4.9191 4.2132 -3.7152 19 9 5.2405 4.4220 -5.0607 20 9 5.2538 5.3001 -2.9004 21 6 5.4055 2.8606 -3.1684 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0276 -0.0005 25 1 1.6886 1.8464 0.8901 26 1 1.6887 1.8464 -0.8900 27 1 3.8485 0.5392 0.8215 28 1 3.9782 2.1726 0.1263 29 1 2.5202 -0.9027 -1.2989 30 1 3.9404 -1.2111 -2.3266 31 1 4.3146 -4.5263 1.0359 32 1 2.3695 1.4487 -2.3259 33 1 3.7083 0.8618 -3.3414 34 1 4.0938 3.2249 -1.4221 35 1 2.8054 4.4534 -3.1066 36 1 3.0797 3.1631 -4.3550 37 1 5.5232 2.0961 -3.9364 38 1 6.2736 2.9408 -2.5143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383208538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:28 Heat of formation + Delta-G solvation = -108.260075 kcal Electronic energy + Delta-G solvation = -21036.466630 eV Core-core repulsion = 17551.294963 eV Total energy + Delta-G solvation = -3485.171667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.144 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.80394 -47.14606 -39.01185 -37.51205 -35.49965 -32.36369 -29.35140 -28.64332 -26.29751 -26.13305 -25.20698 -23.12734 -21.90011 -19.94724 -19.34860 -17.36477 -16.84336 -16.50667 -16.37960 -16.11556 -15.93799 -14.96140 -14.58465 -14.22749 -14.15136 -13.99700 -13.60456 -13.42871 -13.32106 -12.57844 -12.35636 -12.19172 -12.00498 -11.90445 -11.46489 -11.34524 -11.18378 -10.92385 -10.70155 -10.63643 -10.41456 -10.28392 -10.05366 -9.71700 -9.13670 -9.09824 -8.42281 -7.23817 -5.92400 -3.86394 3.36394 3.43310 3.48001 3.49107 3.79865 4.19581 4.28963 4.36126 4.44709 4.54762 5.00808 5.32531 5.39757 5.42011 5.42899 5.43869 5.50167 5.55876 5.58440 5.62937 5.73146 5.79248 5.84461 5.93813 5.98259 6.13082 6.16558 6.36642 6.72216 7.02819 7.36649 7.64920 7.71339 7.95771 8.12525 8.77111 9.14112 9.71356 11.21234 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.023888 B = 0.005512 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.834116 B = 5078.702622 C = 5539.725121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.351 6.351 3 C 0.022 3.978 4 C 0.058 3.942 5 N -0.520 5.520 6 C 0.149 3.851 7 C -0.492 4.492 8 H 0.076 0.924 9 C 0.069 3.931 10 N -0.908 5.908 11 Si 0.873 3.127 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.264 1.264 15 C 0.058 3.942 16 C -0.097 4.097 17 C -0.162 4.162 18 C 0.246 3.754 19 F -0.197 7.197 20 F -0.184 7.184 21 C -0.147 4.147 22 H 0.033 0.967 23 H 0.030 0.970 24 H 0.080 0.920 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.013 0.987 31 H 0.260 0.740 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 14.269 -7.110 16.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.269 6.269 3 C -0.056 4.056 4 C -0.070 4.070 5 N -0.243 5.243 6 C 0.023 3.977 7 C -0.531 4.531 8 H 0.094 0.906 9 C -0.131 4.131 10 N -0.548 5.548 11 Si 0.701 3.299 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.188 1.188 15 C -0.070 4.070 16 C -0.116 4.116 17 C -0.201 4.201 18 C 0.210 3.790 19 F -0.177 7.177 20 F -0.164 7.164 21 C -0.185 4.185 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.833 13.967 -7.065 16.381 hybrid contribution -1.676 -0.158 -0.602 1.788 sum -6.509 13.809 -7.667 17.083 Atomic orbital electron populations 1.22704 0.83566 1.02192 0.98721 1.88389 1.17484 1.26384 1.94673 1.23383 0.97585 0.85688 0.98946 1.22285 0.89236 0.99987 0.95514 1.62144 1.58046 1.04410 0.99690 1.20484 0.96728 0.83267 0.97198 1.20931 1.25378 0.94189 1.12588 0.90577 1.24810 0.95801 0.97335 0.95154 1.69897 1.44404 1.09166 1.31306 0.86891 0.82366 0.79408 0.81239 1.20762 1.21658 1.18836 1.22079 0.96682 0.91928 0.96356 1.22463 0.94613 0.96515 0.97978 1.24148 0.94354 1.00015 1.01575 1.22321 0.98429 0.85123 0.73109 1.92989 1.94166 1.96039 1.34549 1.92995 1.93685 1.57733 1.72036 1.24099 1.00311 0.93090 1.00990 0.94816 0.95174 0.90191 0.94214 0.93926 0.87917 0.91107 0.95128 0.96899 0.93002 0.94593 0.91048 0.87883 0.89324 0.87200 0.87058 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.35 -6.82 7.58 -35.23 -0.27 -7.09 16 3 C 0.02 0.36 5.69 37.16 0.21 0.57 16 4 C 0.06 1.04 5.43 -3.83 -0.02 1.02 16 5 N -0.52 -10.04 4.75 -236.07 -1.12 -11.16 16 6 C 0.15 3.50 3.39 -4.97 -0.02 3.48 16 7 C -0.49 -13.77 8.77 -34.44 -0.30 -14.07 16 8 H 0.08 2.32 7.23 -52.49 -0.38 1.94 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 10 N -0.91 -28.02 13.96 55.43 0.77 -27.25 16 11 Si 0.87 21.83 27.57 -169.99 -4.69 17.14 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 14 H -0.26 -6.34 6.40 56.52 0.36 -5.97 16 15 C 0.06 0.88 4.44 -3.82 -0.02 0.86 16 16 C -0.10 -1.18 3.69 -89.72 -0.33 -1.51 16 17 C -0.16 -1.67 7.42 -25.92 -0.19 -1.86 16 18 C 0.25 2.94 3.28 -25.92 -0.08 2.85 16 19 F -0.20 -2.55 17.41 2.25 0.04 -2.52 16 20 F -0.18 -2.40 17.38 2.25 0.04 -2.36 16 21 C -0.15 -1.77 7.43 -25.83 -0.19 -1.96 16 22 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.04 0.62 5.80 -51.93 -0.30 0.32 16 27 H 0.10 2.19 6.33 -51.93 -0.33 1.86 16 28 H 0.07 1.05 6.54 -51.93 -0.34 0.72 16 29 H 0.03 0.75 3.99 -51.93 -0.21 0.54 16 30 H 0.01 0.31 7.73 -51.93 -0.40 -0.09 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.04 0.54 5.71 -51.93 -0.30 0.24 16 33 H 0.07 1.07 7.71 -51.93 -0.40 0.67 16 34 H 0.10 1.26 6.38 -51.93 -0.33 0.93 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.11 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.11 1.30 7.90 -51.93 -0.41 0.89 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 305.85 15.07 4.61 4.61 Total: -1.00 -31.27 305.85 -6.07 -37.34 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.53 Total: -1.50 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 0.07 Total: -7.21 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.35 Total: -38.41 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.27 Total: -7.09 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.08 Total: -4.88 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.69 Total: 17.14 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.27 -6.07 -37.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383208538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.916 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds