Wall clock time and date at job start Sun Mar 29 2020 23:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42901 * 114.00445 * 2 1 4 4 C 1.52999 * 109.47361 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47115 * 67.01953 * 4 3 2 6 6 C 1.46902 * 111.00145 * 289.89230 * 5 4 3 7 7 C 1.50702 * 109.47140 * 299.63630 * 6 5 4 8 8 H 1.07992 * 119.99863 * 354.97206 * 7 6 5 9 9 C 1.37879 * 119.99799 * 174.96491 * 7 6 5 10 10 N 1.31506 * 119.99738 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00207 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46989 * 89.99844 * 11 9 7 13 13 H 1.48493 * 109.47528 * 210.00013 * 11 9 7 14 14 H 1.48504 * 109.47118 * 330.00222 * 11 9 7 15 15 C 1.46903 * 110.99934 * 53.84643 * 5 4 3 16 16 C 1.53002 * 109.47009 * 66.04661 * 15 5 4 17 17 C 1.53776 * 113.61300 * 184.99987 * 16 15 5 18 18 C 1.53779 * 87.17236 * 220.06018 * 17 16 15 19 19 F 1.39905 * 113.61223 * 139.94270 * 18 17 16 20 20 F 1.39900 * 113.61684 * 270.83965 * 18 17 16 21 21 C 1.53779 * 87.08279 * 25.39326 * 18 17 16 22 22 H 1.09003 * 109.47474 * 300.00156 * 1 2 3 23 23 H 1.09008 * 109.47305 * 59.99724 * 1 2 3 24 24 H 1.08997 * 109.48025 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47012 * 60.00124 * 3 2 1 26 26 H 1.08997 * 109.47297 * 299.99769 * 3 2 1 27 27 H 1.09006 * 109.47169 * 307.01869 * 4 3 2 28 28 H 1.08996 * 109.47239 * 187.02133 * 4 3 2 29 29 H 1.08999 * 109.47113 * 59.63718 * 6 5 4 30 30 H 1.09000 * 109.47098 * 179.63811 * 6 5 4 31 31 H 0.97004 * 119.99930 * 180.02562 * 10 9 7 32 32 H 1.08994 * 109.47227 * 306.04385 * 15 5 4 33 33 H 1.09002 * 109.46865 * 186.04685 * 15 5 4 34 34 H 1.09005 * 112.90655 * 316.25156 * 16 15 5 35 35 H 1.09002 * 113.61561 * 105.46784 * 17 16 15 36 36 H 1.08997 * 113.61860 * 334.65204 * 17 16 15 37 37 H 1.09001 * 113.61401 * 89.11447 * 21 18 17 38 38 H 1.09000 * 113.61070 * 219.93898 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9814 0.6066 -1.2741 6 6 3.6039 -0.8098 -1.3707 7 6 4.2496 -1.5795 -0.2475 8 1 4.9415 -1.0849 0.4181 9 6 3.9570 -2.9151 -0.0696 10 7 4.5201 -3.5866 0.9109 11 14 2.7596 -3.7703 -1.2203 12 1 3.5026 -4.3420 -2.3720 13 1 2.0638 -4.8600 -0.4901 14 1 1.7606 -2.7886 -1.7139 15 6 3.4532 1.3710 -2.4120 16 6 4.0666 2.7727 -2.4135 17 6 3.4869 3.6975 -3.4968 18 6 4.9191 4.2132 -3.7152 19 9 5.2405 4.4220 -5.0607 20 9 5.2538 5.3001 -2.9004 21 6 5.4055 2.8606 -3.1684 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0276 -0.0005 25 1 1.6886 1.8464 0.8901 26 1 1.6887 1.8464 -0.8900 27 1 3.8485 0.5392 0.8215 28 1 3.9782 2.1726 0.1263 29 1 2.5202 -0.9027 -1.2989 30 1 3.9404 -1.2111 -2.3266 31 1 4.3146 -4.5263 1.0359 32 1 2.3695 1.4487 -2.3259 33 1 3.7083 0.8618 -3.3414 34 1 4.0938 3.2249 -1.4221 35 1 2.8054 4.4534 -3.1066 36 1 3.0797 3.1631 -4.3550 37 1 5.5232 2.0961 -3.9364 38 1 6.2736 2.9408 -2.5143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383208538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:27 Heat of formation + Delta-G solvation = -129.578031 kcal Electronic energy + Delta-G solvation = -21037.391046 eV Core-core repulsion = 17551.294963 eV Total energy + Delta-G solvation = -3486.096083 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.144 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.76401 -48.11613 -40.24785 -38.65858 -36.91216 -34.49213 -30.90617 -30.13178 -27.47266 -27.11703 -26.69772 -24.40480 -23.43331 -21.26095 -20.52405 -18.93794 -18.25939 -17.59032 -17.46977 -17.41900 -17.07188 -16.36431 -16.18725 -15.67350 -15.38918 -15.15671 -14.98337 -14.45900 -14.39404 -14.27874 -13.78540 -13.42978 -13.24680 -13.07911 -13.00732 -12.74273 -12.50181 -12.42728 -12.04991 -11.96083 -11.77193 -11.65617 -11.48079 -11.28270 -11.14529 -10.69114 -10.33436 -8.74413 -8.15635 -6.13419 1.38144 1.40354 1.52160 2.44789 2.58513 2.87352 3.01155 3.20785 3.23527 3.40858 3.48004 3.76367 4.18768 4.28178 4.34305 4.45687 4.48380 4.53948 4.57349 4.60658 4.63062 4.71815 4.74979 4.84747 4.86284 4.94801 4.99752 5.10141 5.32008 5.42102 5.54197 5.70931 6.10619 6.42578 6.50337 6.81606 6.91201 7.48328 9.01513 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.023888 B = 0.005512 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.834116 B = 5078.702622 C = 5539.725121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.025 3.975 4 C 0.060 3.940 5 N -0.536 5.536 6 C 0.161 3.839 7 C -0.487 4.487 8 H 0.033 0.967 9 C 0.006 3.994 10 N -0.958 5.958 11 Si 0.941 3.059 12 H -0.273 1.273 13 H -0.291 1.291 14 H -0.244 1.244 15 C 0.061 3.939 16 C -0.094 4.094 17 C -0.144 4.144 18 C 0.242 3.758 19 F -0.203 7.203 20 F -0.192 7.192 21 C -0.152 4.152 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.033 0.967 30 H 0.010 0.990 31 H 0.260 0.740 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.537 15.813 -8.948 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.317 6.317 3 C -0.052 4.052 4 C -0.069 4.069 5 N -0.259 5.259 6 C 0.034 3.966 7 C -0.526 4.526 8 H 0.051 0.949 9 C -0.189 4.189 10 N -0.601 5.601 11 Si 0.766 3.234 12 H -0.199 1.199 13 H -0.217 1.217 14 H -0.168 1.168 15 C -0.067 4.067 16 C -0.112 4.112 17 C -0.182 4.182 18 C 0.206 3.794 19 F -0.184 7.184 20 F -0.172 7.172 21 C -0.190 4.190 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.882 15.550 -8.917 19.201 hybrid contribution -0.957 -0.551 0.029 1.104 sum -7.839 14.999 -8.888 19.116 Atomic orbital electron populations 1.22858 0.81459 1.02579 1.00672 1.88284 1.19976 1.28353 1.95055 1.23394 0.95792 0.85022 1.01028 1.22216 0.91236 1.00130 0.93295 1.62003 1.59250 1.02860 1.01761 1.20188 0.96142 0.85563 0.94716 1.21200 1.24081 0.94470 1.12846 0.94889 1.25708 0.97962 0.98333 0.96943 1.70065 1.46711 1.09553 1.33771 0.85803 0.80263 0.78329 0.79021 1.19897 1.21686 1.16802 1.22130 0.97356 0.92729 0.94448 1.22367 0.94802 0.95195 0.98872 1.24097 0.93431 0.99576 1.01114 1.22446 0.99729 0.84587 0.72620 1.92977 1.94348 1.96046 1.35044 1.92982 1.93891 1.58130 1.72244 1.24150 1.00195 0.93552 1.01077 0.93056 0.92942 0.90716 0.92305 0.91377 0.92671 0.88123 0.94921 0.97201 0.93079 0.93504 0.90883 0.87693 0.87383 0.85659 0.86746 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 11.01 113.37 1.25 1.81 16 2 O -0.40 -14.76 7.58 -148.98 -1.13 -15.89 16 3 C 0.03 0.76 5.69 71.98 0.41 1.17 16 4 C 0.06 2.08 5.43 86.30 0.47 2.55 16 5 N -0.54 -20.16 4.75 -900.79 -4.28 -24.44 16 6 C 0.16 7.47 3.39 85.56 0.29 7.76 16 7 C -0.49 -28.07 8.77 25.60 0.22 -27.85 16 8 H 0.03 2.13 7.23 -2.91 -0.02 2.11 16 9 C 0.01 0.35 5.47 84.66 0.46 0.82 16 10 N -0.96 -61.29 13.96 21.45 0.30 -60.99 16 11 Si 0.94 45.24 27.57 68.60 1.89 47.13 16 12 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 13 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 14 H -0.24 -10.89 6.40 99.48 0.64 -10.25 16 15 C 0.06 1.67 4.44 86.30 0.38 2.05 16 16 C -0.09 -2.01 3.69 -10.21 -0.04 -2.05 16 17 C -0.14 -2.39 7.42 31.12 0.23 -2.16 16 18 C 0.24 5.17 3.28 31.12 0.10 5.27 16 19 F -0.20 -4.83 17.41 44.97 0.78 -4.05 16 20 F -0.19 -4.60 17.38 44.97 0.78 -3.82 16 21 C -0.15 -3.36 7.43 31.18 0.23 -3.13 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.07 1.69 5.80 -2.39 -0.01 1.67 16 27 H 0.05 2.45 6.33 -2.38 -0.02 2.44 16 28 H 0.10 2.84 6.54 -2.39 -0.02 2.82 16 29 H 0.03 1.55 3.99 -2.39 -0.01 1.54 16 30 H 0.01 0.47 7.73 -2.39 -0.02 0.45 16 31 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.05 1.20 5.71 -2.39 -0.01 1.19 16 33 H 0.07 1.98 7.71 -2.39 -0.02 1.96 16 34 H 0.10 2.24 6.38 -2.38 -0.02 2.23 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.13 1.76 8.10 -2.39 -0.02 1.74 16 37 H 0.11 2.46 7.90 -2.39 -0.02 2.44 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -69.73 305.85 3.35 -66.38 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.98 Total: 9.43 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.01 Total: -13.76 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -3.98 Total: -85.42 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.13 Total: -15.89 kcal Atomic # 9 Polarization: -9.43 SS G_CDS: 1.56 Total: -7.87 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.89 Total: 47.13 kcal Total: -69.73 3.35 -66.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383208538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.195 kcal (2) G-P(sol) polarization free energy of solvation -69.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds