Wall clock time and date at job start Mon Mar 30 2020 00:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00080 * 2 1 4 4 H 1.48493 * 109.46984 * 264.85004 * 3 2 1 5 5 H 1.48497 * 109.46624 * 24.85151 * 3 2 1 6 6 H 1.48495 * 109.47081 * 144.84673 * 3 2 1 7 7 C 1.37881 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99518 * 4.52195 * 7 2 1 9 9 C 1.50693 * 120.00181 * 184.52281 * 7 2 1 10 10 H 1.09003 * 109.52441 * 333.43497 * 9 7 2 11 11 C 1.53036 * 109.50174 * 93.48669 * 9 7 2 12 12 C 1.53039 * 109.54345 * 181.28245 * 11 9 7 13 13 C 1.53191 * 109.33793 * 298.68921 * 12 11 9 14 14 N 1.46918 * 108.78239 * 54.61543 * 13 12 11 15 15 C 1.34777 * 120.63528 * 126.36753 * 14 13 12 16 16 O 1.21280 * 120.00116 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99581 * 0.02562 * 15 14 13 18 18 H 1.09001 * 115.53022 * 325.58575 * 17 15 14 19 19 C 1.53002 * 117.46040 * 111.08372 * 17 15 14 20 20 H 1.09003 * 119.29539 * 356.28666 * 19 17 15 21 21 C 1.56212 * 116.99884 * 200.70974 * 19 17 15 22 22 C 1.54894 * 104.22444 * 272.13785 * 21 19 17 23 23 C 1.54892 * 102.74465 * 38.33119 * 22 21 19 24 24 C 1.52996 * 117.45919 * 180.08463 * 17 15 14 25 25 H 1.09005 * 119.30162 * 3.70918 * 24 17 15 26 26 C 1.46928 * 118.73836 * 306.39263 * 14 13 12 27 27 H 0.96999 * 120.00415 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.43181 * 61.27944 * 11 9 7 29 29 H 1.09001 * 109.48292 * 301.32343 * 11 9 7 30 30 H 1.08996 * 109.49769 * 178.71283 * 12 11 9 31 31 H 1.09004 * 109.49520 * 58.64869 * 12 11 9 32 32 H 1.09006 * 109.58594 * 174.40953 * 13 12 11 33 33 H 1.09005 * 109.58570 * 294.67911 * 13 12 11 34 34 H 1.09002 * 110.14516 * 153.61301 * 21 19 17 35 35 H 1.09002 * 110.91693 * 31.04711 * 21 19 17 36 36 H 1.08993 * 110.75794 * 280.01678 * 22 21 19 37 37 H 1.09003 * 110.91225 * 156.71754 * 22 21 19 38 38 H 1.09000 * 110.48428 * 203.37895 * 23 22 21 39 39 H 1.08999 * 110.59589 * 80.79227 * 23 22 21 40 40 H 1.09000 * 109.58776 * 173.38969 * 26 14 13 41 41 H 1.08995 * 109.58814 * 293.67924 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6055 1.9836 -1.3944 5 1 1.3964 2.6816 0.5884 6 1 3.4880 1.4741 0.8061 7 6 2.0046 -1.1941 0.0005 8 1 1.4670 -2.1279 -0.0728 9 6 3.5080 -1.1960 0.1034 10 1 3.9015 -0.2604 -0.2939 11 6 3.9194 -1.3405 1.5704 12 6 5.4457 -1.3105 1.6793 13 6 6.0335 -2.4867 0.8933 14 7 5.5259 -2.4359 -0.4844 15 6 6.3757 -2.4482 -1.5304 16 8 5.9441 -2.4054 -2.6630 17 6 7.8624 -2.5150 -1.2925 18 1 8.2201 -1.9928 -0.4051 19 6 8.5834 -3.8042 -1.6911 20 1 8.0024 -4.6447 -2.0710 21 6 9.9659 -4.0806 -1.0185 22 6 10.9870 -3.3700 -1.9414 23 6 10.2392 -2.0751 -2.3452 24 6 8.7738 -2.5237 -2.5213 25 1 8.3332 -2.4207 -3.5130 26 6 4.0740 -2.3710 -0.7003 27 1 -0.4851 0.8400 -0.0004 28 1 3.5462 -2.2875 1.9601 29 1 3.4978 -0.5185 2.1488 30 1 5.7373 -1.3905 2.7265 31 1 5.8214 -0.3738 1.2675 32 1 7.1211 -2.4135 0.8850 33 1 5.7342 -3.4247 1.3610 34 1 10.1610 -5.1526 -0.9879 35 1 10.0013 -3.6585 -0.0141 36 1 11.2048 -3.9797 -2.8182 37 1 11.9029 -3.1342 -1.3995 38 1 10.6336 -1.6835 -3.2829 39 1 10.3168 -1.3259 -1.5573 40 1 3.8685 -2.2213 -1.7603 41 1 3.6130 -3.3005 -0.3665 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397617236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:57 Heat of formation + Delta-G solvation = -24.722180 kcal Electronic energy + Delta-G solvation = -20336.582766 eV Core-core repulsion = 17409.263104 eV Total energy + Delta-G solvation = -2927.319662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40554 -38.65356 -36.76826 -33.42118 -31.99030 -31.65390 -30.50286 -28.33937 -25.83915 -25.04553 -23.11732 -21.71649 -20.90890 -19.83413 -19.51734 -18.53549 -17.24333 -16.72846 -15.93049 -15.25462 -14.76804 -14.54818 -14.10650 -13.84202 -13.54040 -13.33567 -13.04676 -12.72345 -12.59396 -12.51294 -12.27047 -11.57990 -11.44447 -11.34273 -11.25219 -11.11085 -11.05500 -10.78949 -10.38617 -10.18972 -10.03785 -9.90965 -9.79346 -9.62986 -9.34823 -9.00893 -8.56004 -8.05955 -6.10698 -4.10683 2.71767 3.28637 3.34450 3.36846 3.38875 3.71190 4.31248 4.40647 4.57257 4.58841 4.91160 4.99422 5.04963 5.16264 5.20165 5.23426 5.30474 5.40247 5.41672 5.52226 5.59156 5.63566 5.78887 5.85487 5.90916 5.93561 6.02198 6.11426 6.16782 6.23509 6.26346 6.40000 6.58906 6.70948 6.84427 6.91949 7.25792 7.40227 7.73045 7.88103 8.46566 8.57780 8.93715 9.52315 11.02328 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.004801 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.570178 B = 5830.578585 C = 5950.109545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.075 3.925 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.006 3.994 10 H 0.033 0.967 11 C -0.112 4.112 12 C -0.140 4.140 13 C 0.111 3.889 14 N -0.603 5.603 15 C 0.538 3.462 16 O -0.547 6.547 17 C -0.162 4.162 18 H 0.119 0.881 19 C -0.139 4.139 20 H 0.116 0.884 21 C -0.094 4.094 22 C -0.123 4.123 23 C -0.097 4.097 24 C -0.134 4.134 25 H 0.120 0.880 26 C 0.123 3.877 27 H 0.264 0.736 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.325 -5.904 1.341 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.093 0.907 9 C -0.013 4.013 10 H 0.051 0.949 11 C -0.150 4.150 12 C -0.179 4.179 13 C -0.012 4.012 14 N -0.335 5.335 15 C 0.325 3.675 16 O -0.426 6.426 17 C -0.183 4.183 18 H 0.137 0.863 19 C -0.157 4.157 20 H 0.134 0.866 21 C -0.132 4.132 22 C -0.161 4.161 23 C -0.134 4.134 24 C -0.153 4.153 25 H 0.138 0.862 26 C 0.002 3.998 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.903 -5.770 0.743 21.698 hybrid contribution 0.183 1.028 0.191 1.061 sum 21.087 -4.742 0.934 21.633 Atomic orbital electron populations 1.69895 1.06301 1.27069 1.50276 1.25020 0.94660 0.98943 0.94128 0.86870 0.80140 0.83669 0.78910 1.20153 1.21584 1.18971 1.20869 0.88537 0.94745 1.50979 0.90698 1.19451 0.96763 0.93973 0.91162 0.94874 1.21846 0.91430 1.01462 1.00290 1.22048 0.99123 0.97798 0.98900 1.21711 0.98279 0.99112 0.82128 1.48298 1.08129 1.71486 1.05563 1.19524 0.86826 0.76436 0.84701 1.90667 1.78618 1.50853 1.22431 1.22440 0.91734 1.03310 1.00784 0.86301 1.23643 0.97625 0.91335 1.03141 0.86601 1.22323 0.91654 1.00725 0.98481 1.22671 0.97754 0.96249 0.99379 1.21994 0.92242 0.97392 1.01768 1.23210 0.94875 1.00939 0.96256 0.86172 1.21973 0.75699 0.99791 1.02341 0.92568 0.92591 0.92568 0.91846 0.92364 0.90631 0.91580 0.91072 0.91154 0.91202 0.91264 0.90964 0.91296 0.89634 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.79 26.86 -169.99 -4.57 17.23 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.26 6.86 56.52 0.39 -5.87 16 7 C -0.51 -14.20 8.87 -34.44 -0.31 -14.51 16 8 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.01 0.14 1.86 -91.65 -0.17 -0.03 16 10 H 0.03 0.82 5.41 -51.93 -0.28 0.53 16 11 C -0.11 -2.24 5.14 -26.69 -0.14 -2.37 16 12 C -0.14 -2.20 6.08 -26.61 -0.16 -2.36 16 13 C 0.11 1.58 6.35 -3.72 -0.02 1.55 16 14 N -0.60 -10.82 2.97 -172.76 -0.51 -11.34 16 15 C 0.54 9.67 7.48 -10.98 -0.08 9.59 16 16 O -0.55 -11.92 15.74 5.56 0.09 -11.83 16 17 C -0.16 -2.15 4.64 -91.77 -0.43 -2.58 16 18 H 0.12 1.37 6.57 -51.93 -0.34 1.03 16 19 C -0.14 -1.56 6.81 -88.48 -0.60 -2.16 16 20 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 21 C -0.09 -0.78 6.66 -24.01 -0.16 -0.94 16 22 C -0.12 -0.93 6.91 -24.73 -0.17 -1.10 16 23 C -0.10 -0.88 6.62 -25.07 -0.17 -1.04 16 24 C -0.13 -1.63 6.34 -89.55 -0.57 -2.19 16 25 H 0.12 1.67 7.78 -51.93 -0.40 1.27 16 26 C 0.12 2.61 5.70 -3.70 -0.02 2.59 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.18 8.03 -51.93 -0.42 0.77 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.86 5.51 -51.93 -0.29 0.58 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.00 7.00 -51.93 -0.36 1.64 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -31.71 319.90 -9.23 -40.94 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.74 Total: 0.24 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -3.09 Total: -13.51 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.26 Total: -37.89 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.57 Total: 17.23 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.71 -9.23 -40.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397617236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.217 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds