Wall clock time and date at job start Mon Mar 30 2020 00:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99945 * 2 1 4 4 H 1.48500 * 109.47309 * 270.00316 * 3 2 1 5 5 H 1.48500 * 109.46996 * 29.99979 * 3 2 1 6 6 H 1.48500 * 109.47151 * 150.00174 * 3 2 1 7 7 C 1.37875 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00098 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47432 * 180.02562 * 9 7 2 11 11 C 1.46491 * 120.00363 * 97.21667 * 10 9 7 12 12 C 1.53000 * 109.47616 * 94.52522 * 11 10 9 13 13 C 1.53001 * 117.50016 * 115.29614 * 12 11 10 14 14 C 1.52999 * 117.50145 * 183.95856 * 12 11 10 15 15 C 1.34784 * 119.99777 * 277.21936 * 10 9 7 16 16 O 1.21281 * 119.99709 * 177.16165 * 15 10 9 17 17 C 1.50697 * 119.99901 * 357.14990 * 15 10 9 18 18 C 1.52997 * 119.30178 * 288.22202 * 17 15 10 19 19 C 1.52999 * 60.38121 * 248.69230 * 18 17 15 20 20 H 1.09001 * 119.29776 * 111.30467 * 19 18 17 21 21 C 1.54268 * 118.20225 * 266.38479 * 19 18 17 22 22 C 1.54888 * 104.19490 * 87.78762 * 21 19 18 23 23 C 1.54273 * 117.41052 * 82.57039 * 17 15 10 24 24 H 0.96996 * 120.00234 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46894 * 59.99348 * 9 7 2 26 26 H 1.08998 * 109.46752 * 300.00071 * 9 7 2 27 27 H 1.09001 * 109.47132 * 334.52466 * 11 10 9 28 28 H 1.09000 * 109.47209 * 214.52854 * 11 10 9 29 29 H 1.09005 * 115.54647 * 329.63746 * 12 11 10 30 30 H 1.08998 * 117.50401 * 215.00776 * 13 12 11 31 31 H 1.09005 * 117.49632 * 0.03447 * 13 12 11 32 32 H 1.08996 * 117.49984 * 359.97438 * 14 12 11 33 33 H 1.09002 * 117.49339 * 144.97839 * 14 12 11 34 34 H 1.08996 * 117.46091 * 356.29795 * 18 17 15 35 35 H 1.09006 * 117.45811 * 141.11948 * 18 17 15 36 36 H 1.08999 * 110.48267 * 206.46937 * 21 19 18 37 37 H 1.08998 * 110.48471 * 329.11060 * 21 19 18 38 38 H 1.08998 * 110.75806 * 80.37659 * 22 21 19 39 39 H 1.09004 * 110.75224 * 203.56147 * 22 21 19 40 40 H 1.09005 * 110.48363 * 235.04777 * 23 17 15 41 41 H 1.08998 * 110.48142 * 357.68491 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.5571 -4.2735 1.2571 12 6 1.6657 -5.5009 1.4570 13 6 2.3424 -6.8731 1.4566 14 6 1.8173 -6.2786 2.7658 15 6 2.7534 -4.0290 -1.1593 16 8 3.5801 -4.9164 -1.1531 17 6 2.3413 -3.3920 -2.4613 18 6 0.9521 -3.6849 -3.0315 19 6 2.1923 -4.2240 -3.7472 20 1 2.3805 -5.2976 -3.7527 21 6 2.7983 -3.3824 -4.8893 22 6 3.7850 -2.4263 -4.1743 23 6 3.0235 -2.0639 -2.8495 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6242 -2.5575 0.8880 27 1 2.4113 -3.5799 2.0852 28 1 3.6012 -4.5845 1.2231 29 1 0.6672 -5.4321 1.0251 30 1 1.7892 -7.7071 1.0247 31 1 3.4228 -6.9014 1.3145 32 1 2.5524 -5.9161 3.4844 33 1 0.9185 -6.7210 3.1953 34 1 0.3297 -4.4015 -2.4957 35 1 0.4184 -2.8600 -3.5037 36 1 3.3298 -4.0222 -5.5938 37 1 2.0199 -2.8154 -5.3998 38 1 4.7242 -2.9339 -3.9547 39 1 3.9612 -1.5336 -4.7744 40 1 2.2768 -1.2931 -3.0404 41 1 3.7108 -1.7449 -2.0660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421764983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:08:15 Heat of formation + Delta-G solvation = 6.529221 kcal Electronic energy + Delta-G solvation = -20870.769481 eV Core-core repulsion = 17944.804981 eV Total energy + Delta-G solvation = -2925.964500 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93135 -37.93286 -36.55605 -34.62221 -32.43165 -31.15281 -28.47786 -27.42986 -26.12328 -23.21170 -22.35555 -22.04420 -21.33325 -20.15646 -19.67110 -17.71562 -16.45694 -16.19231 -15.86407 -14.79050 -14.68804 -14.40591 -14.30455 -13.80472 -13.16965 -12.80327 -12.63086 -12.46615 -12.30089 -11.97754 -11.44624 -11.27925 -11.24588 -11.16870 -10.89633 -10.77841 -10.67285 -10.58799 -10.53090 -10.21887 -10.07309 -9.85340 -9.62775 -9.55895 -9.11885 -8.80732 -8.48304 -7.66903 -6.13877 -4.18980 3.23153 3.30932 3.33495 3.45444 3.78422 4.08602 4.22911 4.36710 4.93167 5.07407 5.12155 5.18745 5.21868 5.27170 5.35266 5.52391 5.58911 5.78278 5.81110 5.85121 5.88927 5.97669 6.13152 6.14991 6.15378 6.18826 6.21999 6.23430 6.33172 6.37489 6.57259 6.60113 6.65176 6.81479 6.85983 6.88717 7.29405 7.62794 7.81535 8.13151 8.39750 8.85091 9.11417 9.47006 10.93098 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012726 B = 0.009370 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.693913 B = 2987.633277 C = 4572.417793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.238 3.762 10 N -0.590 5.590 11 C 0.150 3.850 12 C -0.160 4.160 13 C -0.173 4.173 14 C -0.181 4.181 15 C 0.559 3.441 16 O -0.570 6.570 17 C -0.133 4.133 18 C -0.131 4.131 19 C -0.149 4.149 20 H 0.107 0.893 21 C -0.091 4.091 22 C -0.127 4.127 23 C -0.065 4.065 24 H 0.263 0.737 25 H 0.043 0.957 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 -6.832 -3.269 7.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.118 3.882 10 N -0.319 5.319 11 C 0.026 3.974 12 C -0.179 4.179 13 C -0.210 4.210 14 C -0.219 4.219 15 C 0.347 3.653 16 O -0.451 6.451 17 C -0.136 4.136 18 C -0.168 4.168 19 C -0.168 4.168 20 H 0.125 0.875 21 C -0.128 4.128 22 C -0.165 4.165 23 C -0.102 4.102 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.223 -7.138 -3.232 8.145 hybrid contribution 0.229 1.037 0.206 1.082 sum 2.451 -6.101 -3.026 7.238 Atomic orbital electron populations 1.69919 1.05901 1.27036 1.50175 1.24874 0.94761 0.98942 0.95061 0.86627 0.79932 0.83410 0.78323 1.20442 1.21189 1.19875 1.21446 0.93361 0.90413 1.51270 0.92290 1.19461 0.87599 0.82453 0.98698 1.48153 1.44672 1.34063 1.04986 1.20842 0.97420 0.92034 0.87086 1.22793 1.01031 0.93284 1.00782 1.22945 1.00793 0.96701 1.00564 1.22917 1.03043 1.04798 0.91124 1.19293 0.80306 0.81291 0.84423 1.90568 1.34416 1.32582 1.87534 1.21975 1.00923 0.98345 0.92317 1.23044 0.89954 1.02430 1.01378 1.23355 1.01836 0.98610 0.92996 0.87505 1.21891 0.98027 0.96915 0.95967 1.23102 0.98515 0.98386 0.96449 1.22148 0.98776 0.93610 0.95712 0.92689 0.93862 0.94895 0.90070 0.91161 0.88019 0.89598 0.88755 0.88945 0.89197 0.88894 0.88367 0.91726 0.91498 0.91661 0.91756 0.90328 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.17 13.29 55.43 0.74 -23.43 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -13.35 7.76 -34.44 -0.27 -13.61 16 8 H 0.06 1.54 7.31 -52.48 -0.38 1.15 16 9 C 0.24 5.60 4.93 -5.20 -0.03 5.57 16 10 N -0.59 -12.60 2.49 -175.07 -0.44 -13.03 16 11 C 0.15 2.84 5.63 -4.05 -0.02 2.82 16 12 C -0.16 -2.65 5.98 -90.62 -0.54 -3.19 16 13 C -0.17 -2.58 10.18 -26.69 -0.27 -2.85 16 14 C -0.18 -2.45 10.25 -26.69 -0.27 -2.73 16 15 C 0.56 12.10 6.98 -10.98 -0.08 12.03 16 16 O -0.57 -13.36 16.66 5.56 0.09 -13.27 16 17 C -0.13 -2.55 1.28 -154.54 -0.20 -2.75 16 18 C -0.13 -2.25 8.40 -26.73 -0.22 -2.48 16 19 C -0.15 -2.46 6.75 -89.50 -0.60 -3.06 16 20 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 21 C -0.09 -1.28 6.63 -25.07 -0.17 -1.45 16 22 C -0.13 -1.95 6.96 -23.55 -0.16 -2.11 16 23 C -0.06 -1.22 5.45 -23.87 -0.13 -1.35 16 24 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 25 H 0.04 1.05 5.93 -51.93 -0.31 0.74 16 26 H 0.03 0.82 8.02 -51.93 -0.42 0.40 16 27 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 28 H 0.07 1.36 7.26 -51.93 -0.38 0.98 16 29 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.08 1.58 7.15 -51.93 -0.37 1.21 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -27.95 333.69 -9.56 -37.51 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.90 Total: 5.43 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.06 Total: -13.54 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.30 Total: -36.47 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.95 -9.56 -37.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421764983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.041 kcal (2) G-P(sol) polarization free energy of solvation -27.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds