Wall clock time and date at job start Mon Mar 30 2020 00:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00107 * 2 1 4 4 H 1.48495 * 109.47665 * 270.00079 * 3 2 1 5 5 H 1.48506 * 109.47001 * 30.00212 * 3 2 1 6 6 H 1.48502 * 109.47197 * 149.99705 * 3 2 1 7 7 C 1.37880 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99749 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00219 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.46897 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99752 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47296 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47554 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47181 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47181 * 180.02562 * 14 13 12 16 16 O 1.42902 * 109.47386 * 180.02562 * 15 14 13 17 17 C 1.35898 * 116.99694 * 180.02562 * 16 15 14 18 18 C 1.38735 * 120.05254 * 179.97438 * 17 16 15 19 19 C 1.38144 * 119.94607 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.05233 * 0.02562 * 19 18 17 21 21 C 1.38269 * 120.11595 * 359.95530 * 20 19 18 22 22 C 1.38142 * 120.04935 * 0.04230 * 21 20 19 23 23 H 0.96999 * 120.00202 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46843 * 59.99805 * 9 7 2 25 25 H 1.08994 * 109.47125 * 299.99754 * 9 7 2 26 26 H 1.00902 * 110.99865 * 303.94649 * 10 9 7 27 27 H 1.08999 * 109.47137 * 59.99625 * 11 10 9 28 28 H 1.08998 * 109.47261 * 299.99837 * 11 10 9 29 29 H 1.09004 * 109.47133 * 59.99351 * 12 11 10 30 30 H 1.09009 * 109.47326 * 299.99873 * 12 11 10 31 31 H 1.08999 * 109.46920 * 59.99781 * 13 12 11 32 32 H 1.08993 * 109.46801 * 299.99963 * 13 12 11 33 33 H 1.08999 * 109.47370 * 60.00060 * 14 13 12 34 34 H 1.09006 * 109.47017 * 299.99902 * 14 13 12 35 35 H 1.08999 * 109.46920 * 59.99785 * 15 14 13 36 36 H 1.08998 * 109.47220 * 300.00155 * 15 14 13 37 37 H 1.08002 * 120.02704 * 359.70561 * 18 17 16 38 38 H 1.08001 * 119.97447 * 179.97438 * 19 18 17 39 39 H 1.08000 * 119.94089 * 179.97438 * 20 19 18 40 40 H 1.07992 * 119.97577 * 180.02562 * 21 20 19 41 41 H 1.08005 * 120.02748 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 5.4696 -2.6183 0.0011 12 6 5.9410 -4.0738 0.0016 13 6 7.4704 -4.1147 0.0022 14 6 7.9417 -5.5702 0.0033 15 6 9.4712 -5.6111 0.0045 16 8 9.9114 -6.9706 0.0050 17 6 11.2535 -7.1845 0.0066 18 6 11.7506 -8.4797 0.0077 19 6 13.1152 -8.6946 0.0088 20 6 13.9854 -7.6201 0.0094 21 6 13.4925 -6.3282 0.0079 22 6 12.1287 -6.1082 0.0067 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8752 -0.6797 -0.8894 26 1 3.6254 -3.0955 0.7811 27 1 5.8458 -2.1146 0.8915 28 1 5.8473 -2.1140 -0.8884 29 1 5.5647 -4.5779 -0.8886 30 1 5.5634 -4.5778 0.8914 31 1 7.8470 -3.6105 0.8922 32 1 7.8476 -3.6110 -0.8877 33 1 7.5651 -6.0748 -0.8865 34 1 7.5644 -6.0736 0.8935 35 1 9.8474 -5.1067 0.8945 36 1 9.8488 -5.1076 -0.8854 37 1 11.0713 -9.3194 0.0120 38 1 13.5027 -9.7027 0.0100 39 1 15.0519 -7.7901 0.0107 40 1 14.1741 -5.4906 0.0080 41 1 11.7441 -5.0989 0.0060 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425971899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:01 Heat of formation + Delta-G solvation = -34.896017 kcal Electronic energy + Delta-G solvation = -18049.735060 eV Core-core repulsion = 15121.974227 eV Total energy + Delta-G solvation = -2927.760833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.39922 -37.89188 -36.54139 -34.54083 -32.46497 -31.41491 -30.70913 -29.62215 -27.23140 -24.86935 -23.07060 -22.40917 -21.40782 -21.06544 -20.81947 -18.50895 -16.77996 -16.66187 -16.42930 -16.04425 -15.53720 -14.82222 -14.68632 -14.22020 -13.97106 -13.79874 -13.64055 -13.31609 -13.00642 -12.53495 -12.36360 -12.07971 -11.99459 -11.78382 -11.52230 -11.35712 -11.08962 -10.98018 -10.86360 -10.66620 -10.45348 -10.30210 -9.80828 -9.36753 -9.29204 -8.59467 -8.53560 -7.47248 -6.06337 -4.04347 0.97742 1.10416 2.86563 3.28162 3.35086 3.37454 3.44383 4.41341 4.43374 4.51078 4.61957 4.63789 4.77109 4.87638 4.94419 5.03116 5.07658 5.14776 5.22943 5.26974 5.32510 5.49336 5.57774 5.63985 5.74477 5.84863 5.91692 5.95943 6.01540 6.05670 6.08968 6.17470 6.40961 6.43380 6.47524 6.77768 7.01908 7.12052 7.60232 7.89676 8.33751 8.65053 9.01675 9.55532 11.06956 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.061000 B = 0.002124 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.905334 B =13177.025171 C =13592.265268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.683 5.683 11 C 0.056 3.944 12 C -0.115 4.115 13 C -0.114 4.114 14 C -0.117 4.117 15 C 0.059 3.941 16 O -0.315 6.315 17 C 0.133 3.867 18 C -0.156 4.156 19 C -0.082 4.082 20 C -0.163 4.163 21 C -0.081 4.081 22 C -0.211 4.211 23 H 0.264 0.736 24 H -0.017 1.017 25 H 0.021 0.979 26 H 0.335 0.665 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.195 -14.419 0.854 31.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.313 5.313 11 C -0.074 4.074 12 C -0.153 4.153 13 C -0.153 4.153 14 C -0.155 4.155 15 C -0.016 4.016 16 O -0.229 6.229 17 C 0.087 3.913 18 C -0.174 4.174 19 C -0.100 4.100 20 C -0.182 4.182 21 C -0.099 4.099 22 C -0.230 4.230 23 H 0.074 0.926 24 H 0.001 0.999 25 H 0.039 0.961 26 H 0.152 0.848 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 27.803 -14.479 0.168 31.348 hybrid contribution 0.682 1.521 0.888 1.889 sum 28.485 -12.958 1.056 31.312 Atomic orbital electron populations 1.69898 1.06153 1.26886 1.50975 1.24920 0.94774 0.98987 0.94737 0.86806 0.80213 0.83795 0.78589 1.20125 1.21183 1.19319 1.21081 0.88991 0.94838 1.50612 0.90285 1.19996 0.96640 0.85122 0.94694 1.60477 1.04628 1.16714 1.49488 1.21934 0.90611 0.95289 0.99592 1.21543 0.93469 0.97512 1.02758 1.21466 0.96804 0.94677 1.02306 1.21568 0.91748 0.98230 1.03960 1.22938 0.96471 0.80793 1.01408 1.86078 1.19263 1.29336 1.88210 1.19079 0.82673 0.94105 0.95405 1.20493 0.95697 0.94663 1.06563 1.20982 0.92248 0.99255 0.97490 1.21070 0.99846 0.92642 1.04605 1.20974 0.94553 0.97216 0.97126 1.21323 0.94282 0.98525 1.08824 0.92640 0.99900 0.96056 0.84802 0.96499 0.91872 0.90981 0.92100 0.91886 0.91629 0.90603 0.90747 0.91994 0.91939 0.85191 0.85413 0.85985 0.85832 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.06 9.87 -34.44 -0.34 -15.40 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 9 C 0.16 4.05 4.51 -4.98 -0.02 4.03 16 10 N -0.68 -14.34 6.49 -115.06 -0.75 -15.09 16 11 C 0.06 0.92 5.68 -3.83 -0.02 0.90 16 12 C -0.11 -1.48 5.47 -26.73 -0.15 -1.63 16 13 C -0.11 -1.15 5.21 -26.73 -0.14 -1.29 16 14 C -0.12 -1.09 5.58 -26.73 -0.15 -1.24 16 15 C 0.06 0.52 4.74 37.16 0.18 0.70 16 16 O -0.32 -3.41 10.14 -19.42 -0.20 -3.61 16 17 C 0.13 1.35 6.69 -39.22 -0.26 1.09 16 18 C -0.16 -1.40 9.99 -39.43 -0.39 -1.79 16 19 C -0.08 -0.61 10.04 -39.61 -0.40 -1.00 16 20 C -0.16 -1.18 10.04 -39.56 -0.40 -1.58 16 21 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 22 C -0.21 -1.87 9.04 -39.44 -0.36 -2.23 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 24 H -0.02 -0.41 7.20 -51.93 -0.37 -0.79 16 25 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 26 H 0.33 6.77 8.72 -39.29 -0.34 6.43 16 27 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 36 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 40 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.13 0.97 6.30 -52.48 -0.33 0.64 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -31.97 340.04 -9.56 -41.53 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.90 Total: 0.64 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.95 Total: -18.57 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.03 Total: -42.23 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.20 Total: -3.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.97 -9.56 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425971899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.631 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds