Wall clock time and date at job start Mon Mar 30 2020 00:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47045 * 2 1 4 4 C 1.34517 * 125.78559 * 90.00479 * 3 2 1 5 5 C 1.41382 * 106.84164 * 179.76924 * 4 3 2 6 6 C 1.34522 * 106.83768 * 0.23216 * 5 4 3 7 7 C 1.50694 * 125.78527 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47474 * 339.99214 * 7 6 5 9 9 C 1.53000 * 109.47381 * 99.99678 * 7 6 5 10 10 N 1.46903 * 109.46759 * 219.99437 * 7 6 5 11 11 C 1.46909 * 110.99934 * 155.00013 * 10 7 6 12 12 C 1.53002 * 109.46743 * 185.38292 * 11 10 7 13 13 C 1.50698 * 115.55073 * 39.53655 * 12 11 10 14 14 H 1.07997 * 119.99711 * 264.78508 * 13 12 11 15 15 C 1.37879 * 120.00015 * 84.78791 * 13 12 11 16 16 N 1.31509 * 119.99805 * 353.17986 * 15 13 12 17 17 Si 1.86803 * 119.99808 * 173.18119 * 15 13 12 18 18 H 1.48500 * 109.46954 * 60.00310 * 17 15 13 19 19 H 1.48499 * 109.46980 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47178 * 299.99819 * 17 15 13 21 21 C 1.52997 * 117.49754 * 253.82066 * 12 11 10 22 22 C 1.52993 * 60.00116 * 252.51540 * 21 12 11 23 23 O 1.34296 * 108.41893 * 359.97438 * 6 5 4 24 24 H 1.09010 * 109.46992 * 299.99218 * 1 2 3 25 25 H 1.08997 * 109.47862 * 59.99200 * 1 2 3 26 26 H 1.09001 * 109.47228 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46640 * 240.00901 * 2 1 3 28 28 H 1.08995 * 109.47425 * 120.00524 * 2 1 3 29 29 H 1.07997 * 126.57845 * 0.03730 * 4 3 2 30 30 H 1.08001 * 126.58432 * 180.18643 * 5 4 3 31 31 H 1.08997 * 109.46998 * 299.99586 * 9 7 6 32 32 H 1.08996 * 109.47196 * 59.99366 * 9 7 6 33 33 H 1.09005 * 109.47315 * 179.97438 * 9 7 6 34 34 H 1.00901 * 110.99798 * 278.95186 * 10 7 6 35 35 H 1.08993 * 109.47153 * 305.38461 * 11 10 7 36 36 H 1.08996 * 109.46725 * 65.38401 * 11 10 7 37 37 H 0.97001 * 119.99751 * 180.02562 * 16 15 13 38 38 H 1.08999 * 117.50162 * 0.02562 * 21 12 11 39 39 H 1.09008 * 117.49554 * 145.02372 * 21 12 11 40 40 H 1.09004 * 117.50165 * 252.50973 * 22 21 12 41 41 H 1.09009 * 117.51574 * 107.48692 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1624 1.0912 5 6 2.7454 3.4213 0.6322 6 6 2.7267 3.3755 -0.7121 7 6 3.1274 4.4952 -1.6376 8 1 3.0947 5.4418 -1.0982 9 6 4.5477 4.2494 -2.1507 10 7 2.1983 4.5471 -2.7743 11 6 2.1536 5.8950 -3.3567 12 6 1.0810 5.9443 -4.4467 13 6 -0.1890 5.1919 -4.1433 14 1 -0.3153 4.1802 -4.4992 15 6 -1.1896 5.7953 -3.4114 16 7 -0.9850 6.9737 -2.8644 17 14 -2.8359 4.9390 -3.1966 18 1 -2.6305 3.6349 -2.5166 19 1 -3.7328 5.7898 -2.3739 20 1 -3.4527 4.7113 -4.5280 21 6 1.5533 5.9765 -5.9016 22 6 0.9609 7.2336 -5.2617 23 8 2.2915 2.1623 -1.0893 24 1 -0.3633 0.5138 0.8901 25 1 -0.3635 0.5139 -0.8898 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.1861 1.8537 2.1204 30 1 3.0462 4.2593 1.2435 31 1 5.2371 4.2109 -1.3073 32 1 4.5804 3.3028 -2.6900 33 1 4.8373 5.0591 -2.8205 34 1 2.4415 3.8597 -3.4717 35 1 1.9142 6.6194 -2.5783 36 1 3.1241 6.1355 -3.7907 37 1 -1.6888 7.3980 -2.3492 38 1 2.6281 5.9622 -6.0823 39 1 0.9454 5.4532 -6.6397 40 1 -0.0368 7.5374 -5.5788 41 1 1.6457 8.0468 -5.0211 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430725679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:45 Heat of formation + Delta-G solvation = 29.875528 kcal Electronic energy + Delta-G solvation = -20185.147390 eV Core-core repulsion = 17260.195262 eV Total energy + Delta-G solvation = -2924.952128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.17168 -37.26816 -35.45496 -33.87408 -32.38864 -31.73619 -29.96037 -27.59706 -25.48958 -24.57373 -23.54062 -21.47905 -21.27601 -20.96173 -19.55104 -18.99259 -16.53693 -15.89990 -15.70624 -14.76607 -14.49516 -14.42946 -14.20146 -13.88542 -13.41148 -13.19782 -12.88228 -12.61456 -12.40035 -12.24427 -12.16058 -11.64235 -11.58372 -11.47272 -11.12271 -11.01368 -10.88970 -10.83571 -10.63356 -10.40752 -10.08280 -9.47760 -9.41571 -8.76591 -8.25567 -7.98550 -7.88388 -7.45056 -5.85586 -3.85100 2.14375 2.98234 3.31141 3.42790 3.46030 3.50025 4.56353 4.74059 4.90256 5.07100 5.26483 5.31193 5.36174 5.39490 5.42516 5.47538 5.53458 5.58301 5.81417 5.86958 5.91701 5.96488 6.16971 6.19648 6.21637 6.27717 6.33967 6.39113 6.51994 6.56250 6.62324 6.77243 6.88690 6.97199 7.14396 7.47780 7.51260 7.63965 8.02330 8.06536 8.23525 8.62621 9.10311 9.77213 11.25170 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.007031 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.557336 B = 3981.649247 C = 5153.890130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.038 4.038 3 C -0.026 4.026 4 C -0.210 4.210 5 C -0.226 4.226 6 C 0.035 3.965 7 C 0.159 3.841 8 H 0.101 0.899 9 C -0.179 4.179 10 N -0.648 5.648 11 C 0.109 3.891 12 C 0.049 3.951 13 C -0.462 4.462 14 H 0.056 0.944 15 C 0.074 3.926 16 N -0.884 5.884 17 Si 0.885 3.115 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.280 1.280 21 C -0.218 4.218 22 C -0.158 4.158 23 O -0.158 6.158 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.337 0.663 35 H 0.071 0.929 36 H -0.003 1.003 37 H 0.256 0.744 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.546 -8.753 5.551 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 C -0.076 4.076 4 C -0.229 4.229 5 C -0.246 4.246 6 C -0.017 4.017 7 C 0.048 3.952 8 H 0.119 0.881 9 C -0.239 4.239 10 N -0.277 5.277 11 C -0.020 4.020 12 C 0.048 3.952 13 C -0.500 4.500 14 H 0.074 0.926 15 C -0.128 4.128 16 N -0.522 5.522 17 Si 0.713 3.287 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.206 1.206 21 C -0.256 4.256 22 C -0.196 4.196 23 O -0.053 6.053 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.090 0.910 36 H 0.015 0.985 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.842 -8.599 5.751 12.981 hybrid contribution -0.120 -0.143 0.037 0.190 sum 7.722 -8.741 5.788 13.021 Atomic orbital electron populations 1.21802 0.94103 1.01815 1.03190 1.19984 0.96323 0.87899 1.03322 1.22312 1.05446 0.95250 0.84598 1.21391 1.07977 0.94715 0.98827 1.21413 1.09969 0.99359 0.93871 1.22540 1.00094 0.85077 0.93999 1.20101 0.89808 0.92761 0.92547 0.88098 1.22558 0.97465 1.02230 1.01599 1.60257 1.49454 1.07386 1.10586 1.21538 0.94196 0.88561 0.97659 1.18869 0.94665 0.96344 0.85344 1.20097 0.97684 0.98948 1.33309 0.92632 1.24832 0.98084 0.94854 0.95053 1.69984 1.32774 1.15665 1.33791 0.86786 0.84364 0.79737 0.77809 1.20280 1.21645 1.20631 1.23085 0.97446 1.04663 1.00359 1.22486 0.99900 0.90835 1.06346 1.83987 1.64440 1.22426 1.34463 0.92312 0.91754 0.92063 0.90445 0.89527 0.84276 0.84088 0.92274 0.92280 0.91808 0.84469 0.91033 0.98541 0.93472 0.92119 0.90588 0.90105 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.89 37.16 0.37 -1.45 16 2 C -0.04 -0.45 6.47 -27.89 -0.18 -0.63 16 3 C -0.03 -0.40 6.58 -35.62 -0.23 -0.64 16 4 C -0.21 -3.21 10.81 -39.70 -0.43 -3.64 16 5 C -0.23 -3.72 10.80 -39.70 -0.43 -4.15 16 6 C 0.03 0.62 6.16 -35.62 -0.22 0.40 16 7 C 0.16 2.73 3.04 -68.87 -0.21 2.52 16 8 H 0.10 1.72 7.70 -51.93 -0.40 1.32 16 9 C -0.18 -2.50 9.15 37.16 0.34 -2.16 16 10 N -0.65 -13.30 5.51 -107.95 -0.60 -13.90 16 11 C 0.11 2.38 5.59 -3.82 -0.02 2.36 16 12 C 0.05 1.18 1.73 -155.66 -0.27 0.91 16 13 C -0.46 -12.68 8.15 -34.44 -0.28 -12.96 16 14 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 15 C 0.07 2.07 5.39 -17.82 -0.10 1.97 16 16 N -0.88 -25.53 12.96 55.43 0.72 -24.81 16 17 Si 0.88 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.22 -4.74 9.88 -26.74 -0.26 -5.00 16 22 C -0.16 -3.70 9.49 -26.74 -0.25 -3.96 16 23 O -0.16 -2.92 10.64 5.74 0.06 -2.86 16 24 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 33 H 0.06 0.85 7.56 -51.93 -0.39 0.46 16 34 H 0.34 6.71 8.53 -39.29 -0.34 6.37 16 35 H 0.07 1.72 7.92 -51.93 -0.41 1.31 16 36 H 0.00 -0.07 7.37 -51.93 -0.38 -0.45 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 39 H 0.08 1.65 8.14 -51.92 -0.42 1.23 16 40 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 41 H 0.06 1.33 8.14 -51.92 -0.42 0.90 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -29.96 343.93 -8.79 -38.76 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.96 Total: 6.97 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -2.18 Total: -26.42 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.12 Total: -38.71 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: 0.06 Total: -2.86 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.96 -8.79 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430725679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.631 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds