Wall clock time and date at job start Mon Mar 30 2020 00:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00250 * 2 1 4 4 C 1.53008 * 109.47309 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47060 * 65.64703 * 4 3 2 6 6 C 1.36934 * 120.00177 * 270.86135 * 5 4 3 7 7 H 1.07996 * 120.00138 * 141.66746 * 6 5 4 8 8 C 1.38821 * 119.99830 * 321.39458 * 6 5 4 9 9 N 1.31612 * 119.99726 * 160.65683 * 8 6 5 10 10 Si 1.86797 * 119.99927 * 340.65659 * 8 6 5 11 11 H 1.48498 * 109.47111 * 95.45284 * 10 8 6 12 12 H 1.48503 * 109.47129 * 215.45080 * 10 8 6 13 13 H 1.48504 * 109.47162 * 335.45108 * 10 8 6 14 14 C 1.46501 * 119.99573 * 90.85955 * 5 4 3 15 15 C 1.50692 * 109.47301 * 265.03034 * 14 5 4 16 16 C 1.38261 * 120.00152 * 353.16138 * 15 14 5 17 17 C 1.38212 * 120.00181 * 180.02562 * 16 15 14 18 18 C 1.38256 * 120.00005 * 359.95507 * 17 16 15 19 19 C 1.38209 * 119.99965 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.99853 * 180.02562 * 19 18 17 21 21 C 1.38217 * 120.00299 * 172.89306 * 15 14 5 22 22 C 1.50692 * 119.99776 * 359.97438 * 21 15 14 23 23 H 1.09000 * 109.46906 * 300.00534 * 1 2 3 24 24 H 1.09003 * 109.47297 * 59.99481 * 1 2 3 25 25 H 1.08997 * 109.47513 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47281 * 59.99972 * 3 2 1 27 27 H 1.08999 * 109.47202 * 299.99724 * 3 2 1 28 28 H 1.09003 * 109.46763 * 305.65146 * 4 3 2 29 29 H 1.08995 * 109.46982 * 185.65109 * 4 3 2 30 30 H 0.97001 * 120.00149 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.47066 * 25.03308 * 14 5 4 32 32 H 1.09001 * 109.46540 * 145.02910 * 14 5 4 33 33 H 1.08005 * 119.99862 * 359.97438 * 16 15 14 34 34 H 1.08005 * 119.99862 * 179.97438 * 17 16 15 35 35 H 1.07999 * 119.99717 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.47304 * 90.00531 * 20 19 18 37 37 H 1.09003 * 109.46692 * 210.00385 * 20 19 18 38 38 H 1.09003 * 109.46954 * 330.00097 * 20 19 18 39 39 H 1.09000 * 109.47261 * 95.00557 * 22 21 15 40 40 H 1.08994 * 109.47651 * 215.01042 * 22 21 15 41 41 H 1.09010 * 109.47485 * 335.00885 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9768 0.5784 -1.2593 6 6 4.0810 -0.7829 -1.3642 7 1 3.7942 -1.2775 -2.2804 8 6 4.5607 -1.5267 -0.2947 9 7 4.3163 -2.8183 -0.2293 10 14 5.5531 -0.6945 1.0513 11 1 4.6546 -0.3325 2.1769 12 1 6.6052 -1.6232 1.5369 13 1 6.1884 0.5340 0.5104 14 6 4.3066 1.4289 -2.4058 15 6 3.1024 1.5513 -3.3033 16 6 1.9728 0.7947 -3.0517 17 6 0.8685 0.9066 -3.8752 18 6 0.8930 1.7757 -4.9502 19 6 2.0216 2.5330 -5.2009 20 6 2.0481 3.4808 -6.3723 21 6 3.1249 2.4239 -4.3750 22 6 4.3536 3.2533 -4.6454 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8507 0.5586 0.8342 29 1 3.9785 2.1753 0.1005 30 1 4.6517 -3.3382 0.5178 31 1 4.5985 2.4179 -2.0524 32 1 5.1313 0.9840 -2.9627 33 1 1.9537 0.1157 -2.2120 34 1 -0.0137 0.3153 -3.6788 35 1 0.0299 1.8634 -5.5934 36 1 1.6845 4.4587 -6.0568 37 1 3.0696 3.5745 -6.7408 38 1 1.4093 3.0946 -7.1666 39 1 4.9799 2.7464 -5.3795 40 1 4.0563 4.2278 -5.0326 41 1 4.9137 3.3858 -3.7196 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453596867.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:45 Heat of formation + Delta-G solvation = 3.865973 kcal Electronic energy + Delta-G solvation = -20996.646716 eV Core-core repulsion = 18070.566729 eV Total energy + Delta-G solvation = -2926.079987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.32462 -37.35234 -35.56047 -32.82976 -32.39877 -31.27384 -29.05662 -27.30805 -26.05662 -25.66110 -25.49833 -22.85331 -21.41833 -20.30617 -19.41052 -16.71526 -16.02656 -15.94384 -15.33531 -15.10163 -14.57849 -14.16149 -14.13030 -13.97295 -13.36346 -12.97206 -12.83248 -12.56755 -12.40950 -12.11425 -12.07297 -12.01183 -11.78852 -11.51201 -11.44469 -10.98437 -10.76272 -10.67230 -10.35684 -10.31972 -10.19518 -9.67812 -9.48652 -8.88655 -8.40425 -7.99845 -7.85414 -6.79408 -5.85048 -3.30676 1.91868 1.99822 3.38280 3.51906 3.55087 4.31610 4.56719 4.62962 4.94839 5.19798 5.24115 5.42835 5.47898 5.56347 5.65267 5.71691 5.73335 5.78640 5.81891 5.87402 5.97713 6.01415 6.03120 6.08658 6.10483 6.14966 6.21774 6.26756 6.36348 6.41839 6.54917 6.69323 6.73976 6.80637 7.06987 7.27196 7.44642 7.73529 7.97349 8.17871 8.50488 9.06268 9.83042 10.18291 11.30606 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.007427 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.088600 B = 3769.149168 C = 4383.960065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.347 6.347 3 C 0.040 3.960 4 C 0.133 3.867 5 N -0.597 5.597 6 C -0.256 4.256 7 H 0.078 0.922 8 C 0.045 3.955 9 N -0.899 5.899 10 Si 0.879 3.121 11 H -0.287 1.287 12 H -0.305 1.305 13 H -0.272 1.272 14 C 0.180 3.820 15 C -0.091 4.091 16 C -0.095 4.095 17 C -0.136 4.136 18 C -0.133 4.133 19 C -0.105 4.105 20 C -0.107 4.107 21 C -0.096 4.096 22 C -0.112 4.112 23 H 0.026 0.974 24 H 0.031 0.969 25 H 0.078 0.922 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.260 0.740 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.163 0.837 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 12.440 -5.963 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.264 6.264 3 C -0.039 4.039 4 C 0.008 3.992 5 N -0.318 5.318 6 C -0.384 4.384 7 H 0.096 0.904 8 C -0.155 4.155 9 N -0.540 5.540 10 Si 0.710 3.290 11 H -0.215 1.215 12 H -0.233 1.233 13 H -0.197 1.197 14 C 0.054 3.946 15 C -0.093 4.093 16 C -0.113 4.113 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.105 4.105 20 C -0.164 4.164 21 C -0.097 4.097 22 C -0.169 4.169 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.180 0.820 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.987 12.094 -5.876 14.341 hybrid contribution 0.004 0.534 0.815 0.975 sum -4.983 12.628 -5.060 14.488 Atomic orbital electron populations 1.22666 0.83826 1.01866 0.98457 1.88275 1.16925 1.26582 1.94655 1.23363 0.97371 0.85176 0.97981 1.21354 0.90415 0.96638 0.90833 1.44015 1.76023 1.03656 1.08095 1.18590 1.37999 0.79532 1.02286 0.90444 1.25362 0.97569 0.94774 0.97812 1.69839 1.45907 1.06676 1.31585 0.86909 0.80427 0.79182 0.82473 1.21548 1.23320 1.19687 1.19915 0.92474 0.93862 0.88319 1.20999 0.97857 0.94838 0.95616 1.21885 0.91388 0.98182 0.99838 1.21156 0.98944 0.99233 0.96048 1.20828 0.97380 0.98299 0.98643 1.19551 0.94258 0.99271 0.97401 1.20714 1.02080 0.97888 0.95720 1.19560 0.95421 0.98739 0.95980 1.20773 0.95592 0.98404 1.02133 0.95574 0.95056 0.90301 0.95595 0.93703 0.92142 0.92742 0.92981 0.93012 0.91357 0.81987 0.87251 0.87449 0.92051 0.91841 0.92320 0.91632 0.92248 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.55 8.78 -35.23 -0.31 -7.86 16 3 C 0.04 0.79 5.40 37.16 0.20 0.99 16 4 C 0.13 2.86 4.97 -4.03 -0.02 2.84 16 5 N -0.60 -13.73 1.27 -174.60 -0.22 -13.95 16 6 C -0.26 -6.99 8.00 -15.06 -0.12 -7.11 16 7 H 0.08 2.34 7.98 -52.49 -0.42 1.93 16 8 C 0.05 1.30 5.35 -17.43 -0.09 1.21 16 9 N -0.90 -27.57 13.97 55.49 0.78 -26.79 16 10 Si 0.88 22.30 24.87 -169.99 -4.23 18.07 16 11 H -0.29 -7.20 6.72 56.52 0.38 -6.82 16 12 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.18 3.55 4.98 -5.20 -0.03 3.52 16 15 C -0.09 -1.71 5.81 -104.62 -0.61 -2.31 16 16 C -0.10 -1.90 7.14 -39.58 -0.28 -2.18 16 17 C -0.14 -2.37 10.05 -39.58 -0.40 -2.77 16 18 C -0.13 -2.08 9.70 -39.59 -0.38 -2.47 16 19 C -0.10 -1.59 5.88 -104.62 -0.62 -2.20 16 20 C -0.11 -1.24 9.21 36.01 0.33 -0.90 16 21 C -0.10 -1.57 5.88 -104.63 -0.62 -2.18 16 22 C -0.11 -1.46 8.71 36.00 0.31 -1.15 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.85 6.29 -51.93 -0.33 0.52 16 28 H 0.06 1.44 3.13 -51.93 -0.16 1.28 16 29 H 0.05 1.01 7.85 -51.93 -0.41 0.60 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.05 0.90 6.80 -51.93 -0.35 0.55 16 32 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 33 H 0.16 3.69 3.75 -52.48 -0.20 3.49 16 34 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 35 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.67 6.81 -51.93 -0.35 0.32 16 38 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.66 7.01 -51.93 -0.36 0.30 16 41 H 0.07 0.85 6.27 -51.92 -0.33 0.53 16 LS Contribution 317.25 15.07 4.78 4.78 Total: -1.00 -30.98 317.25 -6.69 -37.67 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.29 Total: 1.20 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.20 Total: -13.12 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.55 Total: -40.75 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.31 Total: -7.86 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.23 Total: 18.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.98 -6.69 -37.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453596867.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.541 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds