Wall clock time and date at job start Mon Mar 30 2020 00:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00250 * 2 1 4 4 C 1.53008 * 109.47309 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47060 * 65.64703 * 4 3 2 6 6 C 1.36934 * 120.00177 * 270.86135 * 5 4 3 7 7 H 1.07996 * 120.00138 * 141.66746 * 6 5 4 8 8 C 1.38821 * 119.99830 * 321.39458 * 6 5 4 9 9 N 1.31612 * 119.99726 * 160.65683 * 8 6 5 10 10 Si 1.86797 * 119.99927 * 340.65659 * 8 6 5 11 11 H 1.48498 * 109.47111 * 95.45284 * 10 8 6 12 12 H 1.48503 * 109.47129 * 215.45080 * 10 8 6 13 13 H 1.48504 * 109.47162 * 335.45108 * 10 8 6 14 14 C 1.46501 * 119.99573 * 90.85955 * 5 4 3 15 15 C 1.50692 * 109.47301 * 265.03034 * 14 5 4 16 16 C 1.38261 * 120.00152 * 353.16138 * 15 14 5 17 17 C 1.38212 * 120.00181 * 180.02562 * 16 15 14 18 18 C 1.38256 * 120.00005 * 359.95507 * 17 16 15 19 19 C 1.38209 * 119.99965 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.99853 * 180.02562 * 19 18 17 21 21 C 1.38217 * 120.00299 * 172.89306 * 15 14 5 22 22 C 1.50692 * 119.99776 * 359.97438 * 21 15 14 23 23 H 1.09000 * 109.46906 * 300.00534 * 1 2 3 24 24 H 1.09003 * 109.47297 * 59.99481 * 1 2 3 25 25 H 1.08997 * 109.47513 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47281 * 59.99972 * 3 2 1 27 27 H 1.08999 * 109.47202 * 299.99724 * 3 2 1 28 28 H 1.09003 * 109.46763 * 305.65146 * 4 3 2 29 29 H 1.08995 * 109.46982 * 185.65109 * 4 3 2 30 30 H 0.97001 * 120.00149 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.47066 * 25.03308 * 14 5 4 32 32 H 1.09001 * 109.46540 * 145.02910 * 14 5 4 33 33 H 1.08005 * 119.99862 * 359.97438 * 16 15 14 34 34 H 1.08005 * 119.99862 * 179.97438 * 17 16 15 35 35 H 1.07999 * 119.99717 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.47304 * 90.00531 * 20 19 18 37 37 H 1.09003 * 109.46692 * 210.00385 * 20 19 18 38 38 H 1.09003 * 109.46954 * 330.00097 * 20 19 18 39 39 H 1.09000 * 109.47261 * 95.00557 * 22 21 15 40 40 H 1.08994 * 109.47651 * 215.01042 * 22 21 15 41 41 H 1.09010 * 109.47485 * 335.00885 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9768 0.5784 -1.2593 6 6 4.0810 -0.7829 -1.3642 7 1 3.7942 -1.2775 -2.2804 8 6 4.5607 -1.5267 -0.2947 9 7 4.3163 -2.8183 -0.2293 10 14 5.5531 -0.6945 1.0513 11 1 4.6546 -0.3325 2.1769 12 1 6.6052 -1.6232 1.5369 13 1 6.1884 0.5340 0.5104 14 6 4.3066 1.4289 -2.4058 15 6 3.1024 1.5513 -3.3033 16 6 1.9728 0.7947 -3.0517 17 6 0.8685 0.9066 -3.8752 18 6 0.8930 1.7757 -4.9502 19 6 2.0216 2.5330 -5.2009 20 6 2.0481 3.4808 -6.3723 21 6 3.1249 2.4239 -4.3750 22 6 4.3536 3.2533 -4.6454 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8507 0.5586 0.8342 29 1 3.9785 2.1753 0.1005 30 1 4.6517 -3.3382 0.5178 31 1 4.5985 2.4179 -2.0524 32 1 5.1313 0.9840 -2.9627 33 1 1.9537 0.1157 -2.2120 34 1 -0.0137 0.3153 -3.6788 35 1 0.0299 1.8634 -5.5934 36 1 1.6845 4.4587 -6.0568 37 1 3.0696 3.5745 -6.7408 38 1 1.4093 3.0946 -7.1666 39 1 4.9799 2.7464 -5.3795 40 1 4.0563 4.2278 -5.0326 41 1 4.9137 3.3858 -3.7196 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453596867.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:44 Heat of formation + Delta-G solvation = -14.314539 kcal Electronic energy + Delta-G solvation = -20997.435082 eV Core-core repulsion = 18070.566729 eV Total energy + Delta-G solvation = -2926.868353 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65842 -38.90197 -37.23534 -34.08511 -34.03458 -33.03570 -30.59970 -28.61926 -27.45955 -27.15903 -26.80422 -24.59431 -23.06607 -21.58727 -20.87646 -18.70035 -17.68321 -17.40948 -16.78204 -16.68606 -16.05969 -15.68677 -15.50450 -15.21590 -15.00056 -14.61533 -14.42885 -13.82648 -13.66938 -13.58611 -13.42125 -13.19440 -13.06869 -12.91227 -12.84521 -12.59857 -12.36174 -12.26551 -12.02941 -11.72018 -11.63342 -11.43027 -11.37262 -10.56235 -10.36201 -9.26750 -9.18682 -8.70612 -8.04920 -5.46285 0.61806 0.69024 1.35571 1.44532 1.55058 2.51928 2.99793 3.09852 3.14350 3.48695 4.06286 4.11442 4.21610 4.33553 4.37258 4.45369 4.49154 4.53526 4.59785 4.60770 4.61882 4.67388 4.75692 4.85322 4.88041 4.91847 4.94041 4.98928 5.06790 5.10095 5.14360 5.20773 5.45414 5.53664 5.82873 5.90629 6.01614 6.09202 6.30800 6.39019 6.55870 7.09220 7.74218 8.13258 9.15236 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.007427 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.088600 B = 3769.149168 C = 4383.960065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.391 6.391 3 C 0.046 3.954 4 C 0.124 3.876 5 N -0.604 5.604 6 C -0.225 4.225 7 H 0.030 0.970 8 C -0.016 4.016 9 N -0.953 5.953 10 Si 0.945 3.055 11 H -0.283 1.283 12 H -0.316 1.316 13 H -0.251 1.251 14 C 0.182 3.818 15 C -0.110 4.110 16 C -0.123 4.123 17 C -0.148 4.148 18 C -0.132 4.132 19 C -0.104 4.104 20 C -0.105 4.105 21 C -0.099 4.099 22 C -0.111 4.111 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.090 0.910 30 H 0.257 0.743 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.362 16.117 -6.975 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.310 6.310 3 C -0.033 4.033 4 C -0.001 4.001 5 N -0.326 5.326 6 C -0.355 4.355 7 H 0.048 0.952 8 C -0.211 4.211 9 N -0.598 5.598 10 Si 0.775 3.225 11 H -0.211 1.211 12 H -0.246 1.246 13 H -0.175 1.175 14 C 0.057 3.943 15 C -0.112 4.112 16 C -0.141 4.141 17 C -0.166 4.166 18 C -0.150 4.150 19 C -0.104 4.104 20 C -0.161 4.161 21 C -0.100 4.100 22 C -0.167 4.167 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.190 15.834 -6.901 18.035 hybrid contribution -0.074 -0.561 0.976 1.129 sum -5.264 15.273 -5.925 17.207 Atomic orbital electron populations 1.22777 0.81653 1.02384 1.00012 1.88204 1.19549 1.28240 1.94998 1.23272 0.96007 0.84649 0.99357 1.21516 0.92071 0.97593 0.88884 1.44015 1.76514 1.02321 1.09707 1.18275 1.35368 0.81724 1.00104 0.95203 1.25958 0.99267 0.95209 1.00702 1.69994 1.48369 1.08548 1.32925 0.85831 0.78453 0.78408 0.79781 1.21071 1.24564 1.17491 1.20000 0.92716 0.94341 0.87256 1.20902 0.97099 0.96280 0.96963 1.21649 0.93244 0.99013 1.00162 1.21265 0.98525 1.00145 0.96655 1.21166 0.98671 0.97252 0.97945 1.20047 0.93336 0.99083 0.97979 1.20781 1.03396 0.97613 0.94360 1.19905 0.97092 0.98089 0.94883 1.20830 0.94190 0.99063 1.02621 0.93147 0.94125 0.90463 0.92897 0.93288 0.94538 0.89188 0.93458 0.90037 0.92558 0.85488 0.86779 0.84682 0.90307 0.90636 0.90994 0.90861 0.89746 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 11.01 113.37 1.25 2.20 16 2 O -0.39 -17.29 8.78 -148.98 -1.31 -18.60 16 3 C 0.05 1.74 5.40 71.98 0.39 2.13 16 4 C 0.12 5.16 4.97 86.38 0.43 5.59 16 5 N -0.60 -27.82 1.27 -706.31 -0.90 -28.71 16 6 C -0.22 -12.79 8.00 84.04 0.67 -12.12 16 7 H 0.03 1.96 7.98 -2.91 -0.02 1.94 16 8 C -0.02 -0.95 5.35 84.87 0.45 -0.49 16 9 N -0.95 -61.48 13.97 21.65 0.30 -61.18 16 10 Si 0.95 47.14 24.87 68.60 1.71 48.84 16 11 H -0.28 -13.74 6.72 99.48 0.67 -13.07 16 12 H -0.32 -16.17 7.11 99.48 0.71 -15.47 16 13 H -0.25 -11.49 7.11 99.48 0.71 -10.79 16 14 C 0.18 6.99 4.98 85.63 0.43 7.42 16 15 C -0.11 -4.08 5.81 -19.87 -0.12 -4.19 16 16 C -0.12 -4.96 7.14 22.27 0.16 -4.80 16 17 C -0.15 -5.12 10.05 22.27 0.22 -4.90 16 18 C -0.13 -3.83 9.70 22.27 0.22 -3.61 16 19 C -0.10 -2.83 5.88 -19.87 -0.12 -2.95 16 20 C -0.11 -1.93 9.21 71.24 0.66 -1.27 16 21 C -0.10 -2.98 5.88 -19.87 -0.12 -3.09 16 22 C -0.11 -2.48 8.71 71.23 0.62 -1.86 16 23 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 25 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.81 6.29 -2.39 -0.02 1.79 16 28 H 0.04 1.71 3.13 -2.39 -0.01 1.70 16 29 H 0.09 3.04 7.85 -2.39 -0.02 3.03 16 30 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 31 H 0.08 2.62 6.80 -2.38 -0.02 2.60 16 32 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 33 H 0.13 6.06 3.75 -2.91 -0.01 6.05 16 34 H 0.11 3.67 8.06 -2.91 -0.02 3.65 16 35 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.23 6.81 -2.39 -0.02 1.22 16 38 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.48 7.01 -2.39 -0.02 1.46 16 41 H 0.07 1.52 6.27 -2.38 -0.01 1.50 16 Total: -1.00 -70.83 317.25 5.92 -64.91 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.97 Total: 16.69 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 5.15 Total: -21.96 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -0.59 Total: -89.89 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -1.31 Total: -18.60 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.71 Total: 48.84 kcal Total: -70.83 5.92 -64.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453596867.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.597 kcal (2) G-P(sol) polarization free energy of solvation -70.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds