Wall clock time and date at job start Sun Mar 29 2020 23:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48497 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46679 * 299.99323 * 3 2 1 6 6 H 1.48490 * 109.47387 * 59.99217 * 3 2 1 7 7 C 1.37876 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99931 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00267 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46923 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46748 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00548 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99923 * 180.02562 * 11 10 9 14 14 C 1.47583 * 134.49275 * 5.52263 * 13 11 10 15 15 C 1.53943 * 86.11640 * 204.64339 * 14 13 11 16 16 H 1.08995 * 113.84397 * 90.75155 * 15 14 13 17 17 C 1.53008 * 113.73932 * 222.04990 * 15 14 13 18 18 C 1.52998 * 117.49317 * 225.42265 * 17 15 14 19 19 C 1.53000 * 117.49935 * 156.76110 * 17 15 14 20 20 C 1.47582 * 134.49391 * 185.52380 * 13 11 10 21 21 H 1.08997 * 113.87272 * 269.67475 * 20 13 11 22 22 C 1.52995 * 113.76836 * 41.05799 * 20 13 11 23 23 C 1.53000 * 117.49993 * 42.28599 * 22 20 13 24 24 C 1.52997 * 60.03208 * 107.48120 * 23 22 20 25 25 H 0.96993 * 119.99963 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46540 * 60.00665 * 9 7 2 27 27 H 1.08993 * 109.47368 * 300.00657 * 9 7 2 28 28 H 1.08995 * 109.47240 * 60.00474 * 10 9 7 29 29 H 1.09003 * 109.47061 * 300.00388 * 10 9 7 30 30 H 1.08995 * 113.76871 * 90.33628 * 14 13 11 31 31 H 1.09001 * 113.76554 * 318.94314 * 14 13 11 32 32 H 1.09001 * 115.54909 * 11.08398 * 17 15 14 33 33 H 1.08999 * 117.50434 * 359.97438 * 18 17 15 34 34 H 1.09008 * 117.49695 * 145.02231 * 18 17 15 35 35 H 1.08997 * 117.49947 * 214.97296 * 19 17 15 36 36 H 1.08997 * 117.49500 * 0.02562 * 19 17 15 37 37 H 1.09005 * 115.55134 * 256.61838 * 22 20 13 38 38 H 1.09007 * 117.49750 * 214.98279 * 23 22 20 39 39 H 1.08992 * 117.50218 * 359.97438 * 23 22 20 40 40 H 1.09004 * 117.50163 * 107.50346 * 24 23 22 41 41 H 1.09002 * 117.49711 * 252.52130 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2127 6 1 1.8903 2.3965 1.2123 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9673 0.0033 13 7 2.1659 -6.1343 0.0047 14 6 3.5904 -6.5060 0.1074 15 6 3.1983 -7.7989 -0.6306 16 1 3.2775 -7.7283 -1.7154 17 6 3.8612 -9.0564 -0.0647 18 6 4.4647 -10.0467 -1.0626 19 6 3.1704 -10.3968 -0.3240 20 6 1.7756 -7.5541 -0.0957 21 1 1.5806 -8.0271 0.8667 22 6 0.6756 -7.8199 -1.1253 23 6 0.7739 -7.0928 -2.4679 24 6 1.0618 -8.5933 -2.3885 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5575 -0.8881 27 1 0.6247 -2.5563 0.8918 28 1 2.8720 -3.6036 0.8927 29 1 2.8721 -3.6050 -0.8873 30 1 3.9292 -6.6695 1.1304 31 1 4.2556 -5.8585 -0.4639 32 1 4.3718 -8.9297 0.8900 33 1 4.3892 -9.8027 -2.1222 34 1 5.3722 -10.5719 -0.7642 35 1 3.2269 -11.1520 0.4599 36 1 2.2440 -10.3827 -0.8981 37 1 -0.3206 -7.9886 -0.7160 38 1 -0.1576 -6.7834 -2.9420 39 1 1.6220 -6.4247 -2.6175 40 1 0.3198 -9.2712 -2.8105 41 1 2.0995 -8.9125 -2.4856 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456242833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:37 Heat of formation + Delta-G solvation = 19.561016 kcal Electronic energy + Delta-G solvation = -20010.218632 eV Core-core repulsion = 17084.819233 eV Total energy + Delta-G solvation = -2925.399399 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88934 -39.47617 -37.38927 -36.73600 -35.57487 -33.05865 -30.57510 -28.06981 -27.25611 -24.60253 -23.47118 -23.22378 -22.96297 -22.09030 -20.73235 -19.39336 -18.60304 -17.52980 -17.31141 -16.68752 -16.49388 -16.26984 -15.97390 -15.55372 -14.88013 -14.41029 -14.31047 -14.07580 -13.70934 -13.45288 -13.23923 -13.03211 -12.85117 -12.46578 -12.44378 -12.26201 -12.00962 -11.97076 -11.83528 -11.66173 -11.37421 -11.30881 -11.24545 -11.08664 -10.67530 -10.60025 -10.36374 -9.60892 -8.19963 -6.34710 1.40507 1.42543 1.55902 1.73794 1.84649 2.41322 2.82250 2.98363 3.12747 3.47726 3.64736 3.77783 3.80736 3.96648 4.02865 4.12815 4.23893 4.32931 4.36272 4.42105 4.49697 4.55601 4.64286 4.67817 4.72795 4.74735 4.92265 4.95835 4.98978 5.11360 5.15627 5.19727 5.21437 5.33131 5.41670 5.46684 5.48201 5.59152 5.82039 6.15026 6.75921 6.85718 7.31551 7.36338 8.93087 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033747 B = 0.004068 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.504426 B = 6881.586508 C = 7337.764327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.976 3.024 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.045 3.955 10 C -0.111 4.111 11 C 0.531 3.469 12 O -0.585 6.585 13 N -0.649 5.649 14 C 0.104 3.896 15 C -0.070 4.070 16 H 0.106 0.894 17 C -0.148 4.148 18 C -0.170 4.170 19 C -0.181 4.181 20 C 0.164 3.836 21 H 0.098 0.902 22 C -0.167 4.167 23 C -0.184 4.184 24 C -0.136 4.136 25 H 0.263 0.737 26 H -0.020 1.020 27 H -0.020 1.020 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.593 -23.075 -2.419 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.008 3.992 10 C -0.151 4.151 11 C 0.322 3.678 12 O -0.465 6.465 13 N -0.385 5.385 14 C -0.018 4.018 15 C -0.088 4.088 16 H 0.124 0.876 17 C -0.167 4.167 18 C -0.207 4.207 19 C -0.218 4.218 20 C 0.062 3.938 21 H 0.116 0.884 22 C -0.186 4.186 23 C -0.222 4.222 24 C -0.173 4.173 25 H 0.072 0.928 26 H -0.001 1.001 27 H -0.002 1.002 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.711 -22.768 -2.408 25.717 hybrid contribution -0.654 1.302 0.180 1.468 sum 11.058 -21.466 -2.227 24.249 Atomic orbital electron populations 1.70194 1.08380 1.27798 1.51439 1.26170 0.95745 1.04036 0.94508 0.85237 0.79277 0.77861 0.77645 1.17548 1.20491 1.20500 1.21721 0.93927 0.91555 1.50881 0.90703 1.18664 0.93596 0.92481 0.94480 1.21541 0.99204 0.90338 1.03982 1.20935 0.87227 0.85343 0.74256 1.90636 1.16464 1.87704 1.51683 1.50379 1.10733 1.04586 1.72803 1.23539 0.81921 0.94243 1.02072 1.22752 0.92209 0.93322 1.00562 0.87597 1.22145 1.04288 0.89063 1.01171 1.23083 0.97406 1.02365 0.97796 1.23090 0.97134 0.97659 1.03896 1.22516 0.94207 0.79374 0.97745 0.88416 1.22265 0.99465 1.06873 0.90001 1.22704 1.02416 0.96406 1.00647 1.23180 1.03783 0.92728 0.97584 0.92815 1.00116 1.00180 0.88580 0.88596 0.87663 0.88647 0.86307 0.88504 0.87780 0.88135 0.88569 0.89441 0.90597 0.90084 0.87303 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.86 13.29 21.45 0.28 -60.58 16 2 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 3 Si 0.98 45.10 29.54 68.60 2.03 47.13 16 4 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.07 4.02 7.74 -2.91 -0.02 3.99 16 9 C 0.05 2.65 4.26 29.85 0.13 2.78 16 10 C -0.11 -4.83 5.40 29.85 0.16 -4.67 16 11 C 0.53 22.48 7.70 87.66 0.67 23.15 16 12 O -0.59 -30.79 16.29 -3.03 -0.05 -30.84 16 13 N -0.65 -19.55 3.12 -812.77 -2.54 -22.09 16 14 C 0.10 1.98 8.18 86.48 0.71 2.69 16 15 C -0.07 -1.13 2.67 -10.13 -0.03 -1.16 16 16 H 0.11 1.73 5.87 -2.39 -0.01 1.72 16 17 C -0.15 -1.69 5.55 -10.79 -0.06 -1.75 16 18 C -0.17 -1.59 10.22 30.62 0.31 -1.28 16 19 C -0.18 -1.94 9.94 30.62 0.30 -1.64 16 20 C 0.16 3.91 4.14 45.09 0.19 4.10 16 21 H 0.10 2.24 8.10 -2.39 -0.02 2.22 16 22 C -0.17 -4.32 5.73 -10.77 -0.06 -4.38 16 23 C -0.18 -5.11 9.37 30.59 0.29 -4.82 16 24 C -0.14 -2.51 8.68 30.62 0.27 -2.25 16 25 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 26 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 27 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 28 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 29 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 30 H 0.11 1.61 7.97 -2.39 -0.02 1.59 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.12 1.17 7.97 -2.39 -0.02 1.15 16 33 H 0.10 0.87 8.13 -2.39 -0.02 0.85 16 34 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 1.13 6.52 -2.39 -0.02 1.11 16 37 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 38 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.08 2.41 7.77 -2.39 -0.02 2.39 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.12 1.69 5.57 -2.39 -0.01 1.67 16 Total: -1.00 -78.94 335.23 4.30 -74.64 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.00 Total: 12.61 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 3.57 Total: -20.88 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.25 Total: -82.67 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.05 Total: -30.84 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -78.94 4.30 -74.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456242833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.205 kcal (2) G-P(sol) polarization free energy of solvation -78.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds