Wall clock time and date at job start Mon Mar 30 2020 00:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00021 * 2 1 4 4 C 1.53000 * 109.47112 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46889 * 65.00063 * 4 3 2 6 6 C 1.36940 * 120.00068 * 264.42844 * 5 4 3 7 7 H 1.08000 * 120.00615 * 146.17566 * 6 5 4 8 8 C 1.38816 * 119.99757 * 326.18027 * 6 5 4 9 9 N 1.31620 * 120.00252 * 337.61556 * 8 6 5 10 10 Si 1.86796 * 120.00076 * 157.62435 * 8 6 5 11 11 H 1.48503 * 109.47708 * 89.99472 * 10 8 6 12 12 H 1.48498 * 109.47423 * 209.99949 * 10 8 6 13 13 H 1.48504 * 109.46984 * 329.99627 * 10 8 6 14 14 C 1.46494 * 120.00190 * 84.43123 * 5 4 3 15 15 C 1.53003 * 109.47362 * 89.99952 * 14 5 4 16 16 C 1.50698 * 109.47277 * 180.02562 * 15 14 5 17 17 C 1.38238 * 120.00011 * 89.99885 * 16 15 14 18 18 C 1.38231 * 119.99426 * 179.72373 * 17 16 15 19 19 C 1.38230 * 120.00367 * 0.25585 * 18 17 16 20 20 C 1.50708 * 119.99854 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00370 * 0.02562 * 19 18 17 22 22 C 1.38236 * 119.99870 * 270.23040 * 16 15 14 23 23 H 1.08994 * 109.47319 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47161 * 299.99827 * 1 2 3 25 25 H 1.09001 * 109.46963 * 59.99524 * 1 2 3 26 26 H 1.08998 * 109.47003 * 60.00095 * 3 2 1 27 27 H 1.08994 * 109.47227 * 300.00132 * 3 2 1 28 28 H 1.09003 * 109.47143 * 305.00137 * 4 3 2 29 29 H 1.08999 * 109.47412 * 184.99987 * 4 3 2 30 30 H 0.96993 * 120.00058 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.47285 * 329.99976 * 14 5 4 32 32 H 1.09000 * 109.47212 * 209.99851 * 14 5 4 33 33 H 1.09001 * 109.46901 * 59.99789 * 15 14 5 34 34 H 1.09000 * 109.46875 * 300.00106 * 15 14 5 35 35 H 1.07993 * 119.99657 * 359.97438 * 17 16 15 36 36 H 1.08000 * 119.99560 * 180.27445 * 18 17 16 37 37 H 1.09000 * 109.46867 * 90.00099 * 20 19 18 38 38 H 1.09007 * 109.47035 * 210.00067 * 20 19 18 39 39 H 1.08997 * 109.47004 * 329.99774 * 20 19 18 40 40 H 1.08000 * 120.00502 * 179.97438 * 21 19 18 41 41 H 1.08002 * 120.00185 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2066 -0.7844 -1.3046 7 1 3.9951 -1.3341 -2.2098 8 6 4.7124 -1.4451 -0.1935 9 7 5.3729 -0.7747 0.7267 10 14 4.4560 -3.2857 -0.0043 11 1 5.5851 -4.0108 -0.6404 12 1 4.3958 -3.6314 1.4386 13 1 3.1831 -3.6781 -0.6609 14 6 4.1688 1.3871 -2.4494 15 6 5.6115 1.8946 -2.4921 16 6 5.8100 2.7414 -3.7227 17 6 5.5769 4.1030 -3.6699 18 6 5.7645 4.8805 -4.7973 19 6 6.1800 4.2957 -5.9789 20 6 6.3840 5.1434 -7.2082 21 6 6.4075 2.9333 -6.0334 22 6 6.2205 2.1559 -4.9058 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8515 0.5682 0.8409 29 1 3.9786 2.1765 0.0889 30 1 5.7267 -1.2364 1.5029 31 1 3.4857 2.2360 -2.4209 32 1 3.9677 0.7887 -3.3380 33 1 6.2946 1.0457 -2.5206 34 1 5.8125 2.4930 -1.6035 35 1 5.2522 4.5597 -2.7467 36 1 5.5867 5.9449 -4.7549 37 1 7.4131 5.5015 -7.2359 38 1 6.1825 4.5472 -8.0982 39 1 5.7037 5.9946 -7.1795 40 1 6.7318 2.4764 -6.9566 41 1 6.3986 1.0915 -4.9482 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459530997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:53 Heat of formation + Delta-G solvation = -11.880818 kcal Electronic energy + Delta-G solvation = -19742.972324 eV Core-core repulsion = 16816.209505 eV Total energy + Delta-G solvation = -2926.762819 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.14976 -37.21581 -35.60751 -33.55135 -31.33721 -30.62430 -29.88279 -28.17319 -25.75347 -25.63673 -23.51278 -22.40455 -22.21652 -20.44599 -19.63362 -16.68317 -15.80140 -15.64740 -15.17801 -15.03171 -14.78677 -14.58948 -13.96981 -13.70499 -13.53920 -13.45516 -13.13314 -12.64262 -12.41264 -12.11493 -11.99938 -11.70334 -11.56001 -11.01210 -10.90464 -10.77908 -10.75997 -10.66943 -10.50017 -10.21270 -9.90153 -9.73824 -9.62481 -8.81676 -8.63529 -8.38602 -8.12162 -6.51869 -5.68216 -3.17271 1.65471 1.69455 3.46462 3.53582 3.60232 4.05381 4.60801 4.70597 5.01578 5.03469 5.25895 5.33555 5.40586 5.47089 5.57949 5.67785 5.76736 5.80195 5.81569 5.88973 5.91638 6.03871 6.08249 6.16035 6.27346 6.34878 6.37298 6.40570 6.57145 6.67808 6.75226 6.78076 6.80981 6.82398 7.15654 7.22245 7.37465 7.72870 7.92039 8.09111 8.62304 9.28515 9.93741 10.47317 11.34826 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.004829 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.146599 B = 5797.428828 C = 6549.437312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.045 3.955 4 C 0.141 3.859 5 N -0.576 5.576 6 C -0.238 4.238 7 H 0.058 0.942 8 C 0.013 3.987 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.291 1.291 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.157 3.843 15 C -0.102 4.102 16 C -0.064 4.064 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.109 4.109 21 C -0.120 4.120 22 C -0.117 4.117 23 H 0.074 0.926 24 H 0.026 0.974 25 H 0.028 0.972 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.109 0.891 29 H 0.037 0.963 30 H 0.252 0.748 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.115 0.885 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 9.927 -8.683 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.275 6.275 3 C -0.034 4.034 4 C 0.015 3.985 5 N -0.294 5.294 6 C -0.367 4.367 7 H 0.076 0.924 8 C -0.186 4.186 9 N -0.538 5.538 10 Si 0.727 3.273 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.030 3.970 15 C -0.142 4.142 16 C -0.065 4.065 17 C -0.139 4.139 18 C -0.139 4.139 19 C -0.110 4.110 20 C -0.165 4.165 21 C -0.138 4.138 22 C -0.135 4.135 23 H 0.093 0.907 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.127 0.873 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.750 9.677 -8.523 13.014 hybrid contribution -0.386 -0.630 0.217 0.770 sum -2.137 9.047 -8.306 12.466 Atomic orbital electron populations 1.22632 0.84237 1.01472 0.98412 1.88200 1.16586 1.27839 1.94829 1.23436 0.99092 0.84017 0.96820 1.21042 0.87164 0.96919 0.93415 1.43790 1.75304 1.04339 1.06002 1.18922 1.35636 0.82672 0.99519 0.92422 1.24946 0.96959 0.97602 0.99047 1.69959 1.36065 1.35318 1.12464 0.86395 0.78015 0.86008 0.76886 1.21782 1.21719 1.20395 1.20881 0.91494 0.93379 0.91199 1.21382 1.01916 0.98181 0.92723 1.20312 0.95971 0.93997 0.96222 1.21057 1.00901 0.93707 0.98218 1.20934 1.00966 0.99196 0.92800 1.19780 1.01543 0.94293 0.95433 1.20721 1.01639 0.98941 0.95238 1.20966 1.01175 0.93311 0.98328 1.21119 0.99937 0.99925 0.92516 0.90723 0.95520 0.95308 0.95679 0.95548 0.87344 0.94432 0.93791 0.94988 0.93838 0.90644 0.91904 0.86406 0.86790 0.91748 0.91971 0.92010 0.86712 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.36 -8.00 10.44 -35.23 -0.37 -8.37 16 3 C 0.05 0.94 6.28 37.16 0.23 1.17 16 4 C 0.14 3.32 5.63 -4.04 -0.02 3.30 16 5 N -0.58 -14.22 2.41 -173.24 -0.42 -14.64 16 6 C -0.24 -6.53 9.28 -15.06 -0.14 -6.67 16 7 H 0.06 1.61 7.92 -52.49 -0.42 1.19 16 8 C 0.01 0.37 4.91 -17.43 -0.09 0.28 16 9 N -0.89 -25.75 11.34 55.49 0.63 -25.12 16 10 Si 0.90 22.36 29.61 -169.99 -5.03 17.33 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.16 3.31 5.67 -4.04 -0.02 3.29 16 15 C -0.10 -1.99 5.67 -27.88 -0.16 -2.15 16 16 C -0.06 -1.08 5.13 -104.62 -0.54 -1.61 16 17 C -0.12 -1.83 9.70 -39.58 -0.38 -2.21 16 18 C -0.12 -1.62 9.70 -39.59 -0.38 -2.01 16 19 C -0.11 -1.43 5.88 -104.62 -0.62 -2.05 16 20 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 21 C -0.12 -1.65 9.70 -39.58 -0.38 -2.03 16 22 C -0.12 -1.84 9.70 -39.58 -0.38 -2.22 16 23 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.52 8.11 -51.93 -0.42 0.10 16 28 H 0.11 2.93 5.34 -51.93 -0.28 2.65 16 29 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.03 0.63 8.04 -51.93 -0.42 0.21 16 32 H 0.04 0.93 8.04 -51.93 -0.42 0.51 16 33 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 34 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 35 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 40 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -30.01 342.58 -8.43 -38.44 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.99 Total: -0.83 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.41 Total: -11.97 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.21 Total: -39.76 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.37 Total: -8.37 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.01 -8.43 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459530997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.557 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds