Wall clock time and date at job start Mon Mar 30 2020 00:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00021 * 2 1 4 4 C 1.53000 * 109.47112 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46889 * 65.00063 * 4 3 2 6 6 C 1.36940 * 120.00068 * 264.42844 * 5 4 3 7 7 H 1.08000 * 120.00615 * 146.17566 * 6 5 4 8 8 C 1.38816 * 119.99757 * 326.18027 * 6 5 4 9 9 N 1.31620 * 120.00252 * 337.61556 * 8 6 5 10 10 Si 1.86796 * 120.00076 * 157.62435 * 8 6 5 11 11 H 1.48503 * 109.47708 * 89.99472 * 10 8 6 12 12 H 1.48498 * 109.47423 * 209.99949 * 10 8 6 13 13 H 1.48504 * 109.46984 * 329.99627 * 10 8 6 14 14 C 1.46494 * 120.00190 * 84.43123 * 5 4 3 15 15 C 1.53003 * 109.47362 * 89.99952 * 14 5 4 16 16 C 1.50698 * 109.47277 * 180.02562 * 15 14 5 17 17 C 1.38238 * 120.00011 * 89.99885 * 16 15 14 18 18 C 1.38231 * 119.99426 * 179.72373 * 17 16 15 19 19 C 1.38230 * 120.00367 * 0.25585 * 18 17 16 20 20 C 1.50708 * 119.99854 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00370 * 0.02562 * 19 18 17 22 22 C 1.38236 * 119.99870 * 270.23040 * 16 15 14 23 23 H 1.08994 * 109.47319 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47161 * 299.99827 * 1 2 3 25 25 H 1.09001 * 109.46963 * 59.99524 * 1 2 3 26 26 H 1.08998 * 109.47003 * 60.00095 * 3 2 1 27 27 H 1.08994 * 109.47227 * 300.00132 * 3 2 1 28 28 H 1.09003 * 109.47143 * 305.00137 * 4 3 2 29 29 H 1.08999 * 109.47412 * 184.99987 * 4 3 2 30 30 H 0.96993 * 120.00058 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.47285 * 329.99976 * 14 5 4 32 32 H 1.09000 * 109.47212 * 209.99851 * 14 5 4 33 33 H 1.09001 * 109.46901 * 59.99789 * 15 14 5 34 34 H 1.09000 * 109.46875 * 300.00106 * 15 14 5 35 35 H 1.07993 * 119.99657 * 359.97438 * 17 16 15 36 36 H 1.08000 * 119.99560 * 180.27445 * 18 17 16 37 37 H 1.09000 * 109.46867 * 90.00099 * 20 19 18 38 38 H 1.09007 * 109.47035 * 210.00067 * 20 19 18 39 39 H 1.08997 * 109.47004 * 329.99774 * 20 19 18 40 40 H 1.08000 * 120.00502 * 179.97438 * 21 19 18 41 41 H 1.08002 * 120.00185 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2066 -0.7844 -1.3046 7 1 3.9951 -1.3341 -2.2098 8 6 4.7124 -1.4451 -0.1935 9 7 5.3729 -0.7747 0.7267 10 14 4.4560 -3.2857 -0.0043 11 1 5.5851 -4.0108 -0.6404 12 1 4.3958 -3.6314 1.4386 13 1 3.1831 -3.6781 -0.6609 14 6 4.1688 1.3871 -2.4494 15 6 5.6115 1.8946 -2.4921 16 6 5.8100 2.7414 -3.7227 17 6 5.5769 4.1030 -3.6699 18 6 5.7645 4.8805 -4.7973 19 6 6.1800 4.2957 -5.9789 20 6 6.3840 5.1434 -7.2082 21 6 6.4075 2.9333 -6.0334 22 6 6.2205 2.1559 -4.9058 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8515 0.5682 0.8409 29 1 3.9786 2.1765 0.0889 30 1 5.7267 -1.2364 1.5029 31 1 3.4857 2.2360 -2.4209 32 1 3.9677 0.7887 -3.3380 33 1 6.2946 1.0457 -2.5206 34 1 5.8125 2.4930 -1.6035 35 1 5.2522 4.5597 -2.7467 36 1 5.5867 5.9449 -4.7549 37 1 7.4131 5.5015 -7.2359 38 1 6.1825 4.5472 -8.0982 39 1 5.7037 5.9946 -7.1795 40 1 6.7318 2.4764 -6.9566 41 1 6.3986 1.0915 -4.9482 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459530997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:50 Heat of formation + Delta-G solvation = -27.387600 kcal Electronic energy + Delta-G solvation = -19743.644748 eV Core-core repulsion = 16816.209505 eV Total energy + Delta-G solvation = -2927.435244 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.30914 -38.86800 -37.32213 -34.95446 -33.21257 -31.73938 -31.35282 -29.76360 -27.25126 -27.04592 -25.22376 -23.80968 -23.51213 -21.91782 -21.20092 -18.67158 -17.34474 -16.96854 -16.67579 -16.47015 -16.35753 -15.91112 -15.60610 -15.38635 -15.05849 -14.57282 -14.26424 -14.09992 -13.82691 -13.43369 -13.38311 -13.12582 -12.89014 -12.75424 -12.63114 -12.36597 -12.29247 -12.17166 -12.03500 -11.82978 -11.61782 -11.56374 -11.39656 -10.45943 -10.35304 -9.75840 -9.32712 -8.51426 -7.76905 -5.29046 0.51144 0.56901 1.45793 1.49418 1.59499 2.57521 2.91098 3.19371 3.36522 3.65480 3.98517 4.08466 4.23016 4.26924 4.31036 4.40179 4.53524 4.59231 4.62623 4.67650 4.71044 4.72876 4.82671 4.85671 4.90241 4.91310 4.95238 5.00552 5.05093 5.12477 5.32273 5.34673 5.49266 5.60799 5.71707 5.76296 5.83098 5.90296 6.22618 6.46298 6.65524 7.23942 7.94010 8.42832 9.22321 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.004829 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.146599 B = 5797.428828 C = 6549.437312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.054 3.946 4 C 0.140 3.860 5 N -0.590 5.590 6 C -0.241 4.241 7 H 0.047 0.953 8 C -0.031 4.031 9 N -0.919 5.919 10 Si 0.949 3.051 11 H -0.286 1.286 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.161 3.839 15 C -0.082 4.082 16 C -0.088 4.088 17 C -0.127 4.127 18 C -0.122 4.122 19 C -0.105 4.105 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.132 4.132 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.248 0.752 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.138 0.862 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 11.691 -10.358 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.024 4.024 4 C 0.013 3.987 5 N -0.310 5.310 6 C -0.371 4.371 7 H 0.064 0.936 8 C -0.227 4.227 9 N -0.565 5.565 10 Si 0.778 3.222 11 H -0.213 1.213 12 H -0.219 1.219 13 H -0.204 1.204 14 C 0.035 3.965 15 C -0.122 4.122 16 C -0.089 4.089 17 C -0.145 4.145 18 C -0.140 4.140 19 C -0.105 4.105 20 C -0.164 4.164 21 C -0.142 4.142 22 C -0.150 4.150 23 H 0.101 0.899 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.156 0.844 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.568 11.459 -10.219 15.567 hybrid contribution -0.158 -1.084 0.634 1.266 sum -2.726 10.375 -9.585 14.385 Atomic orbital electron populations 1.22833 0.81441 1.02711 1.00105 1.88119 1.19774 1.28834 1.95206 1.23231 0.96768 0.83952 0.98478 1.20971 0.89553 0.96416 0.91737 1.43945 1.75921 1.03985 1.07178 1.19022 1.34750 0.84267 0.99106 0.93565 1.25492 0.97356 1.00703 0.99145 1.70078 1.37296 1.36321 1.12806 0.85579 0.77786 0.82396 0.76448 1.21289 1.21928 1.20418 1.20876 0.92826 0.93290 0.89473 1.21000 0.99960 0.97214 0.94054 1.20070 0.98865 0.94663 0.95303 1.21190 1.00854 0.92998 0.99444 1.21278 1.00033 1.00509 0.92166 1.20260 0.99354 0.94302 0.96631 1.20795 1.02840 0.99002 0.93775 1.21245 1.00705 0.93854 0.98363 1.21181 1.00648 0.99997 0.93157 0.89854 0.93347 0.93928 0.93177 0.94402 0.90816 0.93472 0.94268 0.93243 0.94661 0.93957 0.93041 0.85744 0.83925 0.90439 0.90818 0.90523 0.84430 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.06 16 2 O -0.40 -17.69 10.44 -148.98 -1.56 -19.25 16 3 C 0.05 2.19 6.28 71.98 0.45 2.64 16 4 C 0.14 6.65 5.63 86.38 0.49 7.14 16 5 N -0.59 -29.84 2.41 -702.00 -1.69 -31.53 16 6 C -0.24 -13.61 9.28 84.03 0.78 -12.83 16 7 H 0.05 2.66 7.92 -2.91 -0.02 2.64 16 8 C -0.03 -1.76 4.91 84.86 0.42 -1.34 16 9 N -0.92 -54.65 11.34 21.65 0.25 -54.40 16 10 Si 0.95 46.96 29.61 68.60 2.03 48.99 16 11 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 12 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 13 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 14 C 0.16 6.93 5.67 86.38 0.49 7.42 16 15 C -0.08 -3.34 5.67 29.85 0.17 -3.17 16 16 C -0.09 -2.98 5.13 -19.87 -0.10 -3.09 16 17 C -0.13 -3.68 9.70 22.27 0.22 -3.46 16 18 C -0.12 -2.93 9.70 22.27 0.22 -2.71 16 19 C -0.11 -2.41 5.88 -19.86 -0.12 -2.53 16 20 C -0.11 -1.63 10.01 71.24 0.71 -0.92 16 21 C -0.12 -3.17 9.70 22.27 0.22 -2.95 16 22 C -0.13 -4.14 9.70 22.27 0.22 -3.92 16 23 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.42 8.11 -2.39 -0.02 1.40 16 28 H 0.07 4.10 5.34 -2.39 -0.01 4.09 16 29 H 0.05 2.08 8.11 -2.39 -0.02 2.06 16 30 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.05 1.93 8.04 -2.39 -0.02 1.91 16 32 H 0.03 1.55 8.04 -2.39 -0.02 1.53 16 33 H 0.04 1.95 8.09 -2.39 -0.02 1.93 16 34 H 0.05 2.15 8.08 -2.39 -0.02 2.13 16 35 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 39 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 40 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.11 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -65.95 342.58 5.40 -60.55 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.97 Total: 13.29 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 5.40 Total: -17.66 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -1.45 Total: -85.93 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -1.56 Total: -19.25 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -65.95 5.40 -60.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459530997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.158 kcal (2) G-P(sol) polarization free energy of solvation -65.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds