Wall clock time and date at job start Mon Mar 30 2020 00:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46691 * 2 1 4 4 C 1.38253 * 120.00323 * 270.02453 * 3 2 1 5 5 C 1.38216 * 119.99780 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.00218 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99892 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99755 * 179.97438 * 7 6 5 9 9 N 1.46495 * 109.47134 * 269.30546 * 8 7 6 10 10 C 1.36936 * 119.99796 * 270.40225 * 9 8 7 11 11 H 1.07997 * 120.00268 * 323.33845 * 10 9 8 12 12 C 1.38817 * 119.99808 * 143.33976 * 10 9 8 13 13 N 1.31617 * 119.99833 * 338.55304 * 12 10 9 14 14 Si 1.86804 * 119.99915 * 158.55079 * 12 10 9 15 15 H 1.48500 * 109.47170 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46681 * 119.99982 * 14 12 10 17 17 H 1.48493 * 109.47029 * 239.99743 * 14 12 10 18 18 C 1.46496 * 120.00028 * 90.40617 * 9 8 7 19 19 C 1.52998 * 109.47380 * 89.99912 * 18 9 8 20 20 O 1.42894 * 109.47390 * 64.99894 * 19 18 9 21 21 C 1.42899 * 114.00360 * 179.97438 * 20 19 18 22 22 C 1.38216 * 119.99707 * 90.00486 * 3 2 1 23 23 H 1.09004 * 109.47003 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47282 * 299.99396 * 1 2 3 25 25 H 1.08997 * 109.47265 * 59.99841 * 1 2 3 26 26 H 1.09003 * 109.47282 * 240.00604 * 2 1 3 27 27 H 1.08997 * 109.47265 * 120.00159 * 2 1 3 28 28 H 1.08001 * 119.99933 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99651 * 180.02562 * 5 4 3 30 30 H 1.07997 * 120.00186 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.46848 * 29.30864 * 8 7 6 32 32 H 1.09001 * 109.46652 * 149.30037 * 8 7 6 33 33 H 0.97003 * 119.99414 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.46880 * 209.99840 * 18 9 8 35 35 H 1.09006 * 109.46997 * 329.99723 * 18 9 8 36 36 H 1.09003 * 109.47057 * 185.00489 * 19 18 9 37 37 H 1.09001 * 109.46914 * 304.99676 * 19 18 9 38 38 H 1.09000 * 109.47521 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47499 * 300.00262 * 21 20 19 40 40 H 1.09004 * 109.46527 * 59.99958 * 21 20 19 41 41 H 1.08000 * 119.99831 * 359.72283 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2622 2.0729 -1.1973 5 6 2.7223 3.3762 -1.1971 6 6 2.9521 4.0281 0.0002 7 6 2.7223 3.3763 1.1971 8 6 2.9734 4.0867 2.5023 9 7 4.3522 3.8434 2.9333 10 6 4.6426 2.7615 3.7208 11 1 3.9452 2.4452 4.4824 12 6 5.8333 2.0712 3.5402 13 7 6.4763 2.1566 2.3949 14 14 6.5231 1.0211 4.9226 15 1 5.6173 1.0918 6.0972 16 1 6.6323 -0.3879 4.4665 17 1 7.8676 1.5240 5.3026 18 6 5.4203 4.7577 2.5218 19 6 5.5640 5.8736 3.5586 20 8 6.0003 5.3170 4.8003 21 6 6.1675 6.2803 5.8424 22 6 2.2627 2.0724 1.1970 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0823 1.5638 -2.1326 29 1 2.9015 3.8856 -2.1324 30 1 3.3113 5.0466 0.0003 31 1 2.8178 5.1573 2.3689 32 1 2.2844 3.7109 3.2588 33 1 7.3085 1.6745 2.2689 34 1 6.3591 4.2090 2.4461 35 1 5.1739 5.1917 1.5527 36 1 6.2962 6.6018 3.2096 37 1 4.6013 6.3652 3.6991 38 1 6.4995 5.7785 6.7513 39 1 6.9124 7.0166 5.5406 40 1 5.2175 6.7807 6.0304 41 1 2.0785 1.5647 2.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459537649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:45 Heat of formation + Delta-G solvation = -10.128627 kcal Electronic energy + Delta-G solvation = -20299.972073 eV Core-core repulsion = 17373.285234 eV Total energy + Delta-G solvation = -2926.686838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.79054 -37.14787 -35.36732 -33.60947 -31.63508 -30.48117 -28.88514 -28.37658 -25.64038 -25.43267 -23.49597 -22.97286 -21.47236 -20.35597 -19.36018 -16.65762 -15.83412 -15.65658 -15.08491 -14.88457 -14.71159 -14.32344 -13.96371 -13.58962 -13.51352 -13.26699 -13.00532 -12.53544 -12.45716 -11.80409 -11.56180 -11.51890 -11.26747 -11.12915 -10.84525 -10.80162 -10.67979 -10.55296 -10.42811 -10.13985 -9.95047 -9.85693 -9.68240 -8.81090 -8.37490 -7.99593 -7.85868 -6.51131 -5.67009 -3.20658 2.12594 2.20190 3.46167 3.53824 3.56888 4.46658 4.64776 4.71319 5.21062 5.29671 5.46534 5.56782 5.61974 5.66809 5.72358 5.77960 5.82309 5.83882 5.90429 6.07779 6.08798 6.15067 6.15381 6.20465 6.31815 6.32607 6.42434 6.44263 6.52102 6.73688 6.78541 6.85595 6.88050 7.18838 7.31110 7.55805 7.70550 7.81909 7.92274 8.09911 8.62162 9.26442 9.90510 10.45613 11.33987 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.006623 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.466955 B = 4226.631199 C = 5096.077383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.140 4.140 5 C -0.124 4.124 6 C -0.122 4.122 7 C -0.068 4.068 8 C 0.174 3.826 9 N -0.565 5.565 10 C -0.237 4.237 11 H 0.058 0.942 12 C 0.020 3.980 13 N -0.885 5.885 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.295 1.295 17 H -0.289 1.289 18 C 0.143 3.857 19 C 0.048 3.952 20 O -0.354 6.354 21 C 0.030 3.970 22 C -0.092 4.092 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.251 0.749 34 H 0.105 0.895 35 H 0.039 0.961 36 H 0.025 0.975 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.026 0.974 40 H 0.028 0.972 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.240 3.551 -3.129 8.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.158 4.158 5 C -0.142 4.142 6 C -0.141 4.141 7 C -0.072 4.072 8 C 0.048 3.952 9 N -0.283 5.283 10 C -0.367 4.367 11 H 0.076 0.924 12 C -0.180 4.180 13 N -0.527 5.527 14 Si 0.727 3.273 15 H -0.202 1.202 16 H -0.222 1.222 17 H -0.215 1.215 18 C 0.016 3.984 19 C -0.031 4.031 20 O -0.272 6.272 21 C -0.068 4.068 22 C -0.111 4.111 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.122 0.878 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.045 3.280 -3.117 8.373 hybrid contribution 0.661 -0.186 0.562 0.887 sum -6.384 3.094 -2.555 7.541 Atomic orbital electron populations 1.21728 0.95416 1.00940 1.01918 1.20479 0.95485 0.93616 1.02386 1.19745 1.00027 0.95470 0.93499 1.20702 1.03175 0.95228 0.96716 1.20898 1.00868 0.95094 0.97386 1.20860 1.01346 0.99550 0.92306 1.20994 0.94020 0.95136 0.97027 1.20078 0.89094 0.95594 0.90433 1.43840 1.01137 1.26799 1.56507 1.18896 1.04024 1.05267 1.08524 0.92432 1.25047 1.00149 0.97267 0.95560 1.69983 1.17537 1.43634 1.21592 0.86334 0.79157 0.79214 0.82617 1.20234 1.22213 1.21536 1.21031 0.96983 0.89625 0.90763 1.23397 0.95472 0.97642 0.86598 1.88221 1.87718 1.31738 1.19534 1.22632 0.98494 0.93269 0.92386 1.20784 0.99092 0.94444 0.96751 0.93030 0.92609 0.92954 0.91788 0.91184 0.87604 0.87462 0.87469 0.94037 0.93022 0.93863 0.87797 0.94237 0.95733 0.95477 0.90758 0.95577 0.95306 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.89 37.16 0.37 -1.41 16 2 C -0.08 -1.23 6.06 -27.88 -0.17 -1.40 16 3 C -0.09 -1.57 5.13 -104.62 -0.54 -2.11 16 4 C -0.14 -2.40 9.70 -39.58 -0.38 -2.79 16 5 C -0.12 -2.17 10.05 -39.58 -0.40 -2.56 16 6 C -0.12 -2.31 9.70 -39.58 -0.38 -2.69 16 7 C -0.07 -1.41 5.46 -104.62 -0.57 -1.98 16 8 C 0.17 3.65 5.79 -5.19 -0.03 3.62 16 9 N -0.56 -13.78 2.40 -174.61 -0.42 -14.20 16 10 C -0.24 -6.44 8.97 -15.06 -0.14 -6.58 16 11 H 0.06 1.59 7.92 -52.49 -0.42 1.17 16 12 C 0.02 0.56 4.96 -17.43 -0.09 0.47 16 13 N -0.88 -25.73 11.41 55.49 0.63 -25.09 16 14 Si 0.90 22.44 29.61 -169.99 -5.03 17.41 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 C 0.14 3.33 5.72 -4.05 -0.02 3.30 16 19 C 0.05 0.98 6.28 37.16 0.23 1.21 16 20 O -0.35 -7.87 10.18 -35.23 -0.36 -8.23 16 21 C 0.03 0.50 11.01 101.05 1.11 1.61 16 22 C -0.09 -1.85 9.36 -39.58 -0.37 -2.22 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 27 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 28 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.11 1.88 8.06 -52.49 -0.42 1.45 16 31 H 0.04 0.78 8.01 -51.93 -0.42 0.37 16 32 H 0.05 1.06 7.99 -51.93 -0.41 0.65 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.10 2.82 5.45 -51.93 -0.28 2.54 16 35 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.11 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -30.29 342.29 -8.39 -38.68 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.00 Total: -0.20 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -1.38 Total: -13.52 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.21 Total: -39.29 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.36 Total: -8.23 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.29 -8.39 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459537649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.552 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds