Wall clock time and date at job start Mon Mar 30 2020 00:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46691 * 2 1 4 4 C 1.38253 * 120.00323 * 270.02453 * 3 2 1 5 5 C 1.38216 * 119.99780 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.00218 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99892 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99755 * 179.97438 * 7 6 5 9 9 N 1.46495 * 109.47134 * 269.30546 * 8 7 6 10 10 C 1.36936 * 119.99796 * 270.40225 * 9 8 7 11 11 H 1.07997 * 120.00268 * 323.33845 * 10 9 8 12 12 C 1.38817 * 119.99808 * 143.33976 * 10 9 8 13 13 N 1.31617 * 119.99833 * 338.55304 * 12 10 9 14 14 Si 1.86804 * 119.99915 * 158.55079 * 12 10 9 15 15 H 1.48500 * 109.47170 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46681 * 119.99982 * 14 12 10 17 17 H 1.48493 * 109.47029 * 239.99743 * 14 12 10 18 18 C 1.46496 * 120.00028 * 90.40617 * 9 8 7 19 19 C 1.52998 * 109.47380 * 89.99912 * 18 9 8 20 20 O 1.42894 * 109.47390 * 64.99894 * 19 18 9 21 21 C 1.42899 * 114.00360 * 179.97438 * 20 19 18 22 22 C 1.38216 * 119.99707 * 90.00486 * 3 2 1 23 23 H 1.09004 * 109.47003 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47282 * 299.99396 * 1 2 3 25 25 H 1.08997 * 109.47265 * 59.99841 * 1 2 3 26 26 H 1.09003 * 109.47282 * 240.00604 * 2 1 3 27 27 H 1.08997 * 109.47265 * 120.00159 * 2 1 3 28 28 H 1.08001 * 119.99933 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99651 * 180.02562 * 5 4 3 30 30 H 1.07997 * 120.00186 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.46848 * 29.30864 * 8 7 6 32 32 H 1.09001 * 109.46652 * 149.30037 * 8 7 6 33 33 H 0.97003 * 119.99414 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.46880 * 209.99840 * 18 9 8 35 35 H 1.09006 * 109.46997 * 329.99723 * 18 9 8 36 36 H 1.09003 * 109.47057 * 185.00489 * 19 18 9 37 37 H 1.09001 * 109.46914 * 304.99676 * 19 18 9 38 38 H 1.09000 * 109.47521 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47499 * 300.00262 * 21 20 19 40 40 H 1.09004 * 109.46527 * 59.99958 * 21 20 19 41 41 H 1.08000 * 119.99831 * 359.72283 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2622 2.0729 -1.1973 5 6 2.7223 3.3762 -1.1971 6 6 2.9521 4.0281 0.0002 7 6 2.7223 3.3763 1.1971 8 6 2.9734 4.0867 2.5023 9 7 4.3522 3.8434 2.9333 10 6 4.6426 2.7615 3.7208 11 1 3.9452 2.4452 4.4824 12 6 5.8333 2.0712 3.5402 13 7 6.4763 2.1566 2.3949 14 14 6.5231 1.0211 4.9226 15 1 5.6173 1.0918 6.0972 16 1 6.6323 -0.3879 4.4665 17 1 7.8676 1.5240 5.3026 18 6 5.4203 4.7577 2.5218 19 6 5.5640 5.8736 3.5586 20 8 6.0003 5.3170 4.8003 21 6 6.1675 6.2803 5.8424 22 6 2.2627 2.0724 1.1970 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0823 1.5638 -2.1326 29 1 2.9015 3.8856 -2.1324 30 1 3.3113 5.0466 0.0003 31 1 2.8178 5.1573 2.3689 32 1 2.2844 3.7109 3.2588 33 1 7.3085 1.6745 2.2689 34 1 6.3591 4.2090 2.4461 35 1 5.1739 5.1917 1.5527 36 1 6.2962 6.6018 3.2096 37 1 4.6013 6.3652 3.6991 38 1 6.4995 5.7785 6.7513 39 1 6.9124 7.0166 5.5406 40 1 5.2175 6.7807 6.0304 41 1 2.0785 1.5647 2.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459537649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:45 Heat of formation + Delta-G solvation = -25.767173 kcal Electronic energy + Delta-G solvation = -20300.650211 eV Core-core repulsion = 17373.285234 eV Total energy + Delta-G solvation = -2927.364977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23853 -38.75912 -37.08402 -34.96573 -33.47301 -32.12881 -30.24926 -29.99838 -27.28037 -27.03192 -24.89194 -24.57287 -23.00052 -21.96748 -20.88081 -18.61152 -17.36352 -17.15793 -16.73505 -16.47202 -16.27243 -15.83821 -15.51152 -15.37987 -15.09714 -14.58464 -14.35871 -14.01900 -13.77980 -13.43225 -13.28358 -12.85630 -12.73234 -12.68443 -12.58146 -12.45315 -12.32134 -12.05705 -11.98062 -11.82067 -11.54498 -11.51827 -11.44521 -10.44810 -10.32999 -9.46157 -9.30440 -8.49006 -7.73303 -5.29909 0.69089 0.74182 1.44120 1.48402 1.56429 2.57040 3.04833 3.22382 3.40082 3.86589 3.97031 4.07260 4.26556 4.38449 4.41452 4.44624 4.55133 4.55537 4.59557 4.64889 4.73123 4.75115 4.81641 4.84137 4.88039 4.92723 4.98044 5.08995 5.11044 5.15732 5.35793 5.42712 5.46468 5.72632 5.74832 5.83972 5.89283 6.05040 6.38363 6.48970 6.68175 7.25715 7.93527 8.44236 9.23494 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.006623 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.466955 B = 4226.631199 C = 5096.077383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.141 4.141 5 C -0.124 4.124 6 C -0.135 4.135 7 C -0.089 4.089 8 C 0.176 3.824 9 N -0.577 5.577 10 C -0.232 4.232 11 H 0.045 0.955 12 C -0.024 4.024 13 N -0.913 5.913 14 Si 0.943 3.057 15 H -0.272 1.272 16 H -0.296 1.296 17 H -0.294 1.294 18 C 0.142 3.858 19 C 0.056 3.944 20 O -0.398 6.398 21 C 0.026 3.974 22 C -0.118 4.118 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.245 0.755 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 4.168 -4.142 10.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.159 4.159 5 C -0.142 4.142 6 C -0.154 4.154 7 C -0.092 4.092 8 C 0.051 3.949 9 N -0.296 5.296 10 C -0.362 4.362 11 H 0.063 0.937 12 C -0.221 4.221 13 N -0.558 5.558 14 Si 0.773 3.227 15 H -0.197 1.197 16 H -0.224 1.224 17 H -0.221 1.221 18 C 0.016 3.984 19 C -0.022 4.022 20 O -0.317 6.317 21 C -0.071 4.071 22 C -0.137 4.137 23 H 0.091 0.909 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.964 3.914 -4.122 9.785 hybrid contribution 0.847 -0.324 0.840 1.236 sum -7.117 3.590 -3.282 8.621 Atomic orbital electron populations 1.21675 0.93344 1.02369 1.01924 1.20539 0.97252 0.91723 1.02504 1.20108 0.99248 0.96872 0.93088 1.21118 1.01940 0.95319 0.97538 1.21305 0.99506 0.95314 0.98080 1.21080 1.01551 1.00342 0.92381 1.20973 0.95440 0.95446 0.97305 1.20087 0.87131 0.96921 0.90783 1.43914 1.02428 1.26399 1.56871 1.18931 1.03606 1.05322 1.08385 0.93690 1.25522 1.00800 0.98795 0.96997 1.70103 1.17706 1.45067 1.22886 0.85587 0.78239 0.77908 0.80922 1.19702 1.22365 1.22100 1.20940 0.95036 0.89947 0.92499 1.23213 0.96871 0.96560 0.85606 1.88139 1.88118 1.34526 1.20927 1.22823 0.99995 0.93008 0.91267 1.20853 1.00766 0.94846 0.97229 0.90912 0.93479 0.92054 0.90246 0.92467 0.84541 0.84325 0.86273 0.91908 0.93601 0.94569 0.91540 0.93162 0.93408 0.94114 0.90012 0.93521 0.93811 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.89 71.98 0.71 -2.40 16 2 C -0.08 -2.36 6.06 29.85 0.18 -2.18 16 3 C -0.09 -3.27 5.13 -19.86 -0.10 -3.37 16 4 C -0.14 -4.50 9.70 22.27 0.22 -4.28 16 5 C -0.12 -4.02 10.05 22.27 0.22 -3.79 16 6 C -0.13 -4.94 9.70 22.27 0.22 -4.73 16 7 C -0.09 -3.65 5.46 -19.87 -0.11 -3.76 16 8 C 0.18 7.41 5.79 85.63 0.50 7.91 16 9 N -0.58 -28.43 2.40 -706.34 -1.69 -30.13 16 10 C -0.23 -12.84 8.97 84.03 0.75 -12.09 16 11 H 0.05 2.56 7.92 -2.91 -0.02 2.54 16 12 C -0.02 -1.38 4.96 84.86 0.42 -0.95 16 13 N -0.91 -54.44 11.41 21.65 0.25 -54.19 16 14 Si 0.94 47.08 29.61 68.60 2.03 49.11 16 15 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 16 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 17 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 18 C 0.14 6.64 5.72 86.38 0.49 7.13 16 19 C 0.06 2.22 6.28 71.98 0.45 2.67 16 20 O -0.40 -17.41 10.18 -148.98 -1.52 -18.92 16 21 C 0.03 0.81 11.01 113.37 1.25 2.06 16 22 C -0.12 -4.83 9.36 22.27 0.21 -4.62 16 23 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 2.01 8.09 -2.39 -0.02 1.99 16 27 H 0.06 1.76 8.09 -2.39 -0.02 1.74 16 28 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.06 2.32 8.01 -2.38 -0.02 2.30 16 32 H 0.05 1.93 7.99 -2.39 -0.02 1.91 16 33 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 34 H 0.07 3.69 5.45 -2.39 -0.01 3.67 16 35 H 0.05 2.17 8.07 -2.38 -0.02 2.15 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -65.90 342.29 5.45 -60.45 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.97 Total: 16.09 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 5.41 Total: -22.40 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -1.45 Total: -84.32 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -1.52 Total: -18.92 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -65.90 5.45 -60.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459537649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.682 kcal (2) G-P(sol) polarization free energy of solvation -65.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds