Wall clock time and date at job start Mon Mar 30 2020 00:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47474 * 2 1 4 4 C 1.38256 * 120.00337 * 264.99645 * 3 2 1 5 5 C 1.38205 * 120.00076 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.00245 * 359.73896 * 5 4 3 7 7 C 1.38213 * 119.99352 * 0.51003 * 6 5 4 8 8 C 1.38213 * 119.99415 * 84.96593 * 3 2 1 9 9 C 1.50694 * 120.00427 * 0.02562 * 8 3 2 10 10 N 1.46494 * 109.47441 * 84.12177 * 9 8 3 11 11 C 1.36943 * 120.00106 * 264.28271 * 10 9 8 12 12 H 1.08002 * 119.99468 * 320.67972 * 11 10 9 13 13 C 1.38806 * 120.00033 * 140.67905 * 11 10 9 14 14 N 1.31629 * 119.99713 * 163.62483 * 13 11 10 15 15 Si 1.86799 * 120.00258 * 343.62930 * 13 11 10 16 16 H 1.48506 * 109.47066 * 95.57705 * 15 13 11 17 17 H 1.48506 * 109.47093 * 215.57538 * 15 13 11 18 18 H 1.48497 * 109.47120 * 335.57669 * 15 13 11 19 19 C 1.46501 * 119.99975 * 84.27921 * 10 9 8 20 20 C 1.52997 * 109.47107 * 90.00493 * 19 10 9 21 21 O 1.42900 * 109.47108 * 64.99871 * 20 19 10 22 22 C 1.42905 * 113.99545 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.47442 * 185.17788 * 1 2 3 24 24 H 1.09007 * 109.46545 * 305.17864 * 1 2 3 25 25 H 1.08998 * 109.47391 * 65.17213 * 1 2 3 26 26 H 1.08998 * 109.46584 * 240.00239 * 2 1 3 27 27 H 1.09001 * 109.47377 * 120.00476 * 2 1 3 28 28 H 1.07996 * 119.99739 * 359.97438 * 4 3 2 29 29 H 1.07998 * 120.00317 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.00154 * 180.28420 * 6 5 4 31 31 H 1.07998 * 120.00014 * 179.76337 * 7 6 5 32 32 H 1.08999 * 109.46959 * 204.12437 * 9 8 3 33 33 H 1.09000 * 109.46999 * 324.11843 * 9 8 3 34 34 H 0.96998 * 119.99584 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.46948 * 210.00015 * 19 10 9 36 36 H 1.08993 * 109.47376 * 329.99907 * 19 10 9 37 37 H 1.08997 * 109.47467 * 184.99997 * 20 19 10 38 38 H 1.09004 * 109.46943 * 304.99622 * 20 19 10 39 39 H 1.08994 * 109.47614 * 59.99718 * 22 21 20 40 40 H 1.09004 * 109.46857 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47284 * 299.99258 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3614 2.0378 -1.1927 5 6 2.8217 3.3409 -1.1927 6 6 2.9480 4.0295 -0.0004 7 6 2.6241 3.4110 1.1924 8 6 2.1638 2.1072 1.1924 9 6 1.8052 1.4348 2.4925 10 7 2.9444 0.6435 2.9636 11 6 3.0110 -0.6952 2.6832 12 1 2.1169 -1.2999 2.7208 13 6 4.2276 -1.2750 2.3508 14 7 4.3675 -2.5831 2.3963 15 14 5.6663 -0.1991 1.8390 16 1 6.5308 0.0647 3.0172 17 1 6.4562 -0.8944 0.7911 18 1 5.1555 1.0876 1.3017 19 6 4.0126 1.2845 3.7346 20 6 3.6767 1.2163 5.2257 21 8 3.6701 -0.1481 5.6506 22 6 3.3649 -0.3239 7.0356 23 1 -0.3634 -1.0234 0.0927 24 1 -0.3633 0.5921 0.8401 25 1 -0.3634 0.4315 -0.9326 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.2587 1.5014 -2.1244 29 1 3.0782 3.8231 -2.1244 30 1 3.3034 5.0494 -0.0008 31 1 2.7264 3.9474 2.1241 32 1 1.5560 2.1916 3.2363 33 1 0.9471 0.7804 2.3385 34 1 5.2177 -2.9882 2.1643 35 1 4.9543 0.7672 3.5504 36 1 4.1051 2.3269 3.4303 37 1 4.4253 1.7697 5.7925 38 1 2.6937 1.6550 5.3971 39 1 2.3754 0.0827 7.2441 40 1 3.3794 -1.3864 7.2787 41 1 4.1069 0.1976 7.6402 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459538368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:48 Heat of formation + Delta-G solvation = 1.691947 kcal Electronic energy + Delta-G solvation = -21017.489199 eV Core-core repulsion = 18091.314939 eV Total energy + Delta-G solvation = -2926.174260 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.13736 -37.30468 -35.49472 -33.44962 -31.88369 -30.85542 -29.02759 -28.53959 -25.85594 -25.68316 -23.16532 -22.95514 -21.61890 -20.71810 -19.43049 -16.84446 -16.09184 -15.72873 -15.47726 -14.97024 -14.72734 -14.57386 -14.10037 -13.94880 -13.16464 -12.95232 -12.89179 -12.68779 -12.45522 -12.11667 -11.89098 -11.63709 -11.49371 -11.18471 -11.06300 -10.78519 -10.75302 -10.56142 -10.39898 -10.11817 -9.93640 -9.61338 -9.45838 -8.90004 -8.47367 -8.24852 -7.91394 -6.77432 -5.88399 -3.32875 1.95570 1.97451 3.37902 3.53328 3.60581 4.30510 4.56885 4.61593 5.10514 5.35717 5.39793 5.46003 5.49523 5.59572 5.71151 5.77674 5.81308 5.87833 5.95202 6.00097 6.05692 6.08121 6.10566 6.13989 6.21204 6.26284 6.30581 6.48062 6.54643 6.58275 6.65520 6.73360 6.82146 7.00768 7.09628 7.26796 7.49834 7.65752 7.95776 8.15283 8.44640 9.00346 9.78247 10.15988 11.26109 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.008229 C = 0.007682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.704390 B = 3401.750969 C = 3644.104548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C -0.049 4.049 4 C -0.129 4.129 5 C -0.135 4.135 6 C -0.136 4.136 7 C -0.122 4.122 8 C -0.084 4.084 9 C 0.178 3.822 10 N -0.589 5.589 11 C -0.246 4.246 12 H 0.081 0.919 13 C 0.047 3.953 14 N -0.899 5.899 15 Si 0.875 3.125 16 H -0.289 1.289 17 H -0.306 1.306 18 H -0.264 1.264 19 C 0.136 3.864 20 C 0.048 3.952 21 O -0.349 6.349 22 C 0.032 3.968 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.261 0.739 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.028 0.972 38 H 0.038 0.962 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 10.189 -0.052 11.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 C -0.050 4.050 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.141 4.141 8 C -0.087 4.087 9 C 0.052 3.948 10 N -0.310 5.310 11 C -0.375 4.375 12 H 0.098 0.902 13 C -0.154 4.154 14 N -0.540 5.540 15 Si 0.706 3.294 16 H -0.217 1.217 17 H -0.234 1.234 18 H -0.188 1.188 19 C 0.010 3.990 20 C -0.032 4.032 21 O -0.266 6.266 22 C -0.066 4.066 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.149 0.851 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.364 9.849 -0.190 10.774 hybrid contribution 1.147 0.896 -0.158 1.463 sum -3.217 10.745 -0.348 11.221 Atomic orbital electron populations 1.21679 0.96004 1.01100 1.00632 1.21133 0.94935 0.93024 1.06403 1.19810 0.96979 0.96063 0.92105 1.21012 1.00996 0.95071 0.97588 1.20909 1.01891 0.95154 0.97439 1.20933 1.02142 0.99327 0.93010 1.20960 1.00707 0.95107 0.97286 1.20933 0.97576 0.93146 0.97078 1.20072 0.91896 0.93670 0.89156 1.44064 1.22501 1.06269 1.58153 1.18507 0.95905 0.81454 1.41588 0.90212 1.25363 0.97812 0.94900 0.97331 1.69802 1.25088 1.09335 1.49794 0.86942 0.83232 0.81753 0.77424 1.21698 1.23437 1.18839 1.21261 0.93366 0.96153 0.88247 1.23231 0.98241 0.83652 0.98046 1.88288 1.91001 1.24726 1.22603 1.22643 0.97792 1.01652 0.84492 0.92825 0.92914 0.94078 0.92548 0.85069 0.87061 0.87276 0.87290 0.87128 0.93968 0.91136 0.92914 0.92424 0.92728 0.95406 0.94390 0.95185 0.90327 0.95609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.67 37.16 0.36 -1.81 16 2 C -0.12 -2.26 5.38 -27.88 -0.15 -2.41 16 3 C -0.05 -0.93 5.13 -104.62 -0.54 -1.47 16 4 C -0.13 -2.25 9.68 -39.59 -0.38 -2.63 16 5 C -0.14 -2.18 10.05 -39.58 -0.40 -2.57 16 6 C -0.14 -2.17 10.05 -39.58 -0.40 -2.57 16 7 C -0.12 -2.10 9.65 -39.58 -0.38 -2.48 16 8 C -0.08 -1.61 5.45 -104.63 -0.57 -2.18 16 9 C 0.18 3.44 5.31 -5.20 -0.03 3.41 16 10 N -0.59 -13.39 2.05 -174.62 -0.36 -13.74 16 11 C -0.25 -6.52 6.80 -15.06 -0.10 -6.62 16 12 H 0.08 2.30 7.73 -52.49 -0.41 1.89 16 13 C 0.05 1.33 5.39 -17.43 -0.09 1.24 16 14 N -0.90 -27.20 13.97 55.49 0.78 -26.42 16 15 Si 0.87 22.85 24.73 -169.99 -4.20 18.64 16 16 H -0.29 -7.48 6.78 56.52 0.38 -7.09 16 17 H -0.31 -8.21 7.11 56.52 0.40 -7.81 16 18 H -0.26 -6.83 7.04 56.52 0.40 -6.43 16 19 C 0.14 2.92 4.84 -4.04 -0.02 2.90 16 20 C 0.05 0.92 6.28 37.16 0.23 1.15 16 21 O -0.35 -7.65 10.18 -35.23 -0.36 -8.01 16 22 C 0.03 0.52 11.01 101.05 1.11 1.64 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.82 6.90 -51.93 -0.36 0.46 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.05 8.05 -51.93 -0.42 0.64 16 27 H 0.13 2.95 3.76 -51.93 -0.20 2.76 16 28 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.04 0.73 8.02 -51.93 -0.42 0.31 16 33 H 0.07 1.36 5.57 -51.93 -0.29 1.07 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.06 1.41 3.04 -51.93 -0.16 1.25 16 36 H 0.05 1.05 8.05 -51.93 -0.42 0.63 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 325.21 15.07 4.90 4.90 Total: -1.00 -30.79 325.21 -7.07 -37.86 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.47 Total: 1.19 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.36 Total: -14.42 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.42 Total: -40.16 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.36 Total: -8.01 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.20 Total: 18.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.79 -7.07 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459538368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.555 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds