Wall clock time and date at job start Sun Mar 29 2020 23:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31355 * 1 3 3 Si 1.86797 * 120.00383 * 2 1 4 4 H 1.48499 * 109.46980 * 240.00379 * 3 2 1 5 5 H 1.48500 * 109.47199 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47127 * 120.00352 * 3 2 1 7 7 C 1.39074 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99897 * 191.49588 * 7 2 1 9 9 N 1.36820 * 120.00158 * 11.49211 * 7 2 1 10 10 C 1.34776 * 120.00214 * 196.36077 * 9 7 2 11 11 O 1.21663 * 119.99764 * 4.50654 * 10 9 7 12 12 C 1.46952 * 119.99988 * 184.50833 * 10 9 7 13 13 C 1.33124 * 119.99688 * 174.41286 * 12 10 9 14 14 C 1.50709 * 119.99595 * 180.27547 * 13 12 10 15 15 C 1.53001 * 109.46538 * 239.72218 * 14 13 12 16 16 C 1.53004 * 109.46625 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47297 * 60.00068 * 16 15 14 18 18 C 1.52997 * 109.46788 * 299.99839 * 17 16 15 19 19 C 1.52989 * 109.46981 * 119.72512 * 14 13 12 20 20 C 1.46502 * 119.99997 * 16.36207 * 9 7 2 21 21 C 1.53000 * 117.50061 * 128.80037 * 20 9 7 22 22 C 1.53006 * 117.49781 * 60.14087 * 20 9 7 23 23 H 0.97002 * 119.99363 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.00208 * 354.41055 * 12 10 9 25 25 H 1.07996 * 120.00104 * 359.97438 * 13 12 10 26 26 H 1.09001 * 109.46896 * 359.72308 * 14 13 12 27 27 H 1.09000 * 109.47349 * 300.00142 * 15 14 13 28 28 H 1.09004 * 109.47273 * 60.00510 * 15 14 13 29 29 H 1.09001 * 109.46727 * 300.00040 * 16 15 14 30 30 H 1.08998 * 109.46915 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.46975 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.46986 * 59.99822 * 17 16 15 33 33 H 1.09000 * 109.47343 * 299.99765 * 18 17 16 34 34 H 1.09004 * 109.46833 * 179.97438 * 18 17 16 35 35 H 1.08999 * 109.47433 * 299.99433 * 19 14 13 36 36 H 1.08998 * 109.47915 * 59.99889 * 19 14 13 37 37 H 1.08996 * 115.55314 * 274.47488 * 20 9 7 38 38 H 1.09008 * 117.49600 * 0.02562 * 21 20 9 39 39 H 1.08998 * 117.49802 * 145.02286 * 21 20 9 40 40 H 1.09001 * 117.49728 * 214.98249 * 22 20 9 41 41 H 1.09000 * 117.49802 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6176 0.0000 4 1 3.1013 1.6963 -1.2125 5 1 1.2827 2.7464 0.0006 6 1 3.1015 1.6962 1.2125 7 6 2.0088 -1.2045 -0.0005 8 1 3.0726 -1.2140 0.1859 9 7 1.3453 -2.3774 -0.2371 10 6 1.9218 -3.5536 0.0798 11 8 2.9960 -3.5702 0.6507 12 6 1.2529 -4.8160 -0.2643 13 6 1.8710 -5.9760 -0.0525 14 6 1.1875 -7.2704 -0.4111 15 6 1.0418 -8.1346 0.8430 16 6 0.3485 -9.4490 0.4788 17 6 1.1858 -10.1963 -0.5611 18 6 1.3315 -9.3320 -1.8151 19 6 2.0243 -8.0178 -1.4511 20 6 0.0080 -2.3547 -0.8350 21 6 -0.2344 -3.2420 -2.0576 22 6 -0.1354 -1.7233 -2.2214 23 1 -0.4849 0.8401 0.0004 24 1 0.2600 -4.8029 -0.6888 25 1 2.8640 -5.9891 0.3717 26 1 0.2008 -7.0583 -0.8229 27 1 2.0285 -8.3466 1.2548 28 1 0.4456 -7.6020 1.5840 29 1 -0.6382 -9.2372 0.0668 30 1 0.2443 -10.0645 1.3723 31 1 0.6916 -11.1324 -0.8208 32 1 2.1725 -10.4079 -0.1490 33 1 0.3448 -9.1203 -2.2272 34 1 1.9284 -9.8642 -2.5558 35 1 2.1281 -7.4022 -2.3446 36 1 3.0110 -8.2299 -1.0394 37 1 -0.8177 -2.2254 -0.1354 38 1 0.6010 -3.8431 -2.4168 39 1 -1.2197 -3.6963 -2.1624 40 1 -1.0556 -1.1790 -2.4337 41 1 0.7651 -1.3245 -2.6883 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491859858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:48 Heat of formation + Delta-G solvation = -23.687604 kcal Electronic energy + Delta-G solvation = -20050.957412 eV Core-core repulsion = 17123.682612 eV Total energy + Delta-G solvation = -2927.274800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73498 -39.49288 -37.88692 -35.25863 -34.39927 -33.05906 -31.56737 -30.57296 -27.29245 -24.65084 -23.35301 -23.20819 -23.13603 -21.58021 -20.64019 -19.67677 -18.89935 -17.79700 -17.00847 -16.31552 -16.08122 -15.91026 -15.21671 -15.02419 -14.96069 -14.84596 -14.61317 -13.98086 -13.49099 -13.29751 -13.14920 -13.00318 -12.94764 -12.68942 -12.43484 -12.24832 -12.14544 -11.95478 -11.86809 -11.68318 -11.29816 -11.11584 -11.09945 -10.98928 -10.66232 -10.28362 -10.07616 -9.75211 -8.30410 -5.91476 0.64608 1.38451 1.41387 1.48249 2.25267 2.51994 2.97298 3.12880 3.22951 3.69868 3.87002 3.97694 4.14461 4.23237 4.24413 4.35700 4.45157 4.47077 4.52519 4.65394 4.68834 4.70538 4.71163 4.81292 4.84736 5.02796 5.12012 5.22177 5.24582 5.32129 5.34089 5.39077 5.39868 5.40890 5.49031 5.50940 5.57958 5.67179 5.72678 6.08958 6.53154 7.17106 7.47752 8.06398 8.68403 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036564 B = 0.004355 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.599521 B = 6428.117675 C = 6745.381942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.011 3.989 3 Si 0.983 3.017 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.352 4.352 8 H 0.068 0.932 9 N -0.422 5.422 10 C 0.451 3.549 11 O -0.652 6.652 12 C -0.197 4.197 13 C -0.084 4.084 14 C -0.050 4.050 15 C -0.112 4.112 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.114 4.114 19 C -0.111 4.111 20 C 0.108 3.892 21 C -0.181 4.181 22 C -0.148 4.148 23 H 0.274 0.726 24 H 0.148 0.852 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 -15.763 -5.378 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.189 1.189 6 H -0.205 1.205 7 C -0.480 4.480 8 H 0.086 0.914 9 N -0.137 5.137 10 C 0.244 3.756 11 O -0.543 6.543 12 C -0.217 4.217 13 C -0.105 4.105 14 C -0.068 4.068 15 C -0.150 4.150 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.152 4.152 19 C -0.149 4.149 20 C 0.003 3.997 21 C -0.218 4.218 22 C -0.186 4.186 23 H 0.085 0.915 24 H 0.165 0.835 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.149 0.851 40 H 0.118 0.882 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.872 -15.550 -5.118 17.080 hybrid contribution 0.800 1.517 0.381 1.756 sum -4.072 -14.034 -4.737 15.361 Atomic orbital electron populations 1.69978 1.06390 1.28465 1.46036 1.25915 0.96416 1.01633 0.95371 0.85161 0.78149 0.77283 0.78734 1.19610 1.18886 1.20469 1.19552 0.93278 0.84692 1.50436 0.91412 1.43283 1.14814 1.04730 1.50904 1.19099 0.86994 0.85558 0.83964 1.90537 1.26218 1.88195 1.49362 1.22926 1.02017 0.91281 1.05507 1.23658 0.98561 0.94123 0.94123 1.20349 0.99046 0.90659 0.96786 1.21549 1.01060 0.96155 0.96211 1.21520 0.99114 0.95138 0.99405 1.21558 1.00262 0.98486 0.95357 1.21512 1.01047 0.94761 0.97850 1.21531 0.98767 0.96745 0.97811 1.21132 0.85074 1.04339 0.89116 1.23711 1.03867 0.93375 1.00867 1.22726 1.01625 0.94777 0.99475 0.91545 0.83478 0.88874 0.89580 0.92348 0.92516 0.91328 0.91136 0.90677 0.92282 0.91285 0.91055 0.92270 0.92371 0.88326 0.89241 0.85074 0.88236 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.47 10.08 21.69 0.22 -45.25 16 2 C 0.01 0.59 5.01 84.96 0.43 1.01 16 3 Si 0.98 43.20 29.57 68.60 2.03 45.23 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.35 -20.85 9.25 84.12 0.78 -20.07 16 8 H 0.07 4.34 7.34 -2.91 -0.02 4.32 16 9 N -0.42 -23.02 2.93 -617.33 -1.81 -24.83 16 10 C 0.45 24.24 7.49 86.53 0.65 24.89 16 11 O -0.65 -40.46 15.90 -4.23 -0.07 -40.53 16 12 C -0.20 -7.93 7.75 23.41 0.18 -7.75 16 13 C -0.08 -2.91 8.35 24.54 0.20 -2.71 16 14 C -0.05 -1.23 2.49 -11.54 -0.03 -1.26 16 15 C -0.11 -2.46 5.19 30.60 0.16 -2.30 16 16 C -0.11 -1.87 5.92 30.60 0.18 -1.69 16 17 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 18 C -0.11 -1.83 5.92 30.58 0.18 -1.65 16 19 C -0.11 -2.37 5.18 30.58 0.16 -2.21 16 20 C 0.11 4.89 3.62 44.99 0.16 5.06 16 21 C -0.18 -6.16 7.79 30.62 0.24 -5.93 16 22 C -0.15 -5.99 8.89 30.62 0.27 -5.72 16 23 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 24 H 0.15 5.06 5.06 -2.91 -0.01 5.05 16 25 H 0.09 3.71 7.50 -2.91 -0.02 3.69 16 26 H 0.09 1.94 7.81 -2.39 -0.02 1.93 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 4.70 7.68 -2.39 -0.02 4.68 16 38 H 0.09 3.09 7.04 -2.38 -0.02 3.07 16 39 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 41 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -69.06 325.15 5.10 -63.96 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.99 Total: 23.33 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 3.74 Total: -21.91 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -1.59 Total: -70.08 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.07 Total: -40.53 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -69.06 5.10 -63.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491859858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.274 kcal (2) G-P(sol) polarization free energy of solvation -69.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds