Wall clock time and date at job start Sun Mar 29 2020 23:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86798 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47352 * 93.91988 * 3 2 1 5 5 H 1.48497 * 109.46970 * 213.92112 * 3 2 1 6 6 H 1.48499 * 109.47079 * 333.91621 * 3 2 1 7 7 C 1.39078 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99995 * 357.66993 * 7 2 1 9 9 N 1.36818 * 119.99855 * 177.66650 * 7 2 1 10 10 C 1.34780 * 120.00165 * 50.55426 * 9 7 2 11 11 O 1.21664 * 119.99712 * 6.05758 * 10 9 7 12 12 C 1.46947 * 120.00042 * 186.04696 * 10 9 7 13 13 C 1.33123 * 119.99781 * 186.73682 * 12 10 9 14 14 C 1.50701 * 120.00119 * 13.45821 * 13 12 10 15 15 C 1.53001 * 109.46662 * 249.13432 * 14 13 12 16 16 C 1.53000 * 109.46701 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47429 * 60.00141 * 16 15 14 18 18 C 1.53001 * 109.46615 * 299.99933 * 17 16 15 19 19 C 1.52998 * 109.47492 * 60.00079 * 18 17 16 20 20 C 1.46500 * 120.00014 * 230.55853 * 9 7 2 21 21 C 1.52998 * 117.49688 * 3.20236 * 20 9 7 22 22 C 1.52995 * 117.49720 * 294.58136 * 20 9 7 23 23 H 0.97005 * 119.99856 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.00239 * 6.74779 * 12 10 9 25 25 H 1.08002 * 120.00064 * 193.45322 * 13 12 10 26 26 H 1.09002 * 109.47035 * 9.13574 * 14 13 12 27 27 H 1.08991 * 109.47208 * 299.99499 * 15 14 13 28 28 H 1.09001 * 109.46861 * 60.00418 * 15 14 13 29 29 H 1.09002 * 109.47621 * 300.00093 * 16 15 14 30 30 H 1.08997 * 109.47178 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.47295 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46758 * 59.99424 * 17 16 15 33 33 H 1.08993 * 109.47572 * 299.99643 * 18 17 16 34 34 H 1.09010 * 109.46663 * 179.97438 * 18 17 16 35 35 H 1.08997 * 109.47502 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.47087 * 59.99339 * 19 18 17 37 37 H 1.09001 * 115.54740 * 148.90427 * 20 9 7 38 38 H 1.08999 * 117.50029 * 0.02562 * 21 20 9 39 39 H 1.09007 * 117.49960 * 145.02432 * 21 20 9 40 40 H 1.09005 * 117.49707 * 214.97642 * 22 20 9 41 41 H 1.08999 * 117.50056 * 359.97203 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.5779 1.9986 1.3968 5 1 3.5011 1.4654 -0.7813 6 1 1.4060 2.6751 -0.6156 7 6 2.0088 -1.2045 0.0005 8 1 1.4694 -2.1394 0.0390 9 7 3.3761 -1.2050 -0.0477 10 6 4.0812 -0.4451 0.8137 11 8 3.5092 0.1550 1.7041 12 6 5.5407 -0.3417 0.6775 13 6 6.2519 0.2974 1.6037 14 6 5.6232 0.6479 2.9277 15 6 5.4467 2.1647 3.0227 16 6 4.8078 2.5206 4.3666 17 6 5.7113 2.0400 5.5041 18 6 5.8877 0.5232 5.4090 19 6 6.5267 0.1673 4.0651 20 6 4.0739 -2.0315 -1.0358 21 6 3.2176 -2.8133 -2.0340 22 6 3.9421 -3.5502 -0.9058 23 1 -0.4850 0.8401 -0.0004 24 1 6.0362 -0.7839 -0.1741 25 1 7.2796 0.5645 1.4064 26 1 4.6502 0.1631 3.0075 27 1 6.4197 2.6494 2.9429 28 1 4.8027 2.5070 2.2127 29 1 3.8347 2.0359 4.4461 30 1 4.6817 3.6011 4.4342 31 1 5.2558 2.2931 6.4615 32 1 6.6844 2.5247 5.4246 33 1 4.9147 0.0385 5.4884 34 1 6.5318 0.1809 6.2191 35 1 6.6528 -0.9132 3.9975 36 1 7.4997 0.6520 3.9857 37 1 5.0265 -1.6374 -1.3897 38 1 2.1351 -2.7123 -1.9558 39 1 3.6068 -2.9336 -3.0451 40 1 4.8080 -4.1554 -1.1747 41 1 3.3366 -3.9345 -0.0849 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491859859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:51 Heat of formation + Delta-G solvation = -7.936477 kcal Electronic energy + Delta-G solvation = -20894.984517 eV Core-core repulsion = 17968.392737 eV Total energy + Delta-G solvation = -2926.591780 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19989 -39.44410 -38.01935 -35.22748 -34.35459 -33.43975 -31.58290 -30.64191 -27.35796 -24.38180 -23.42714 -23.25586 -22.97408 -22.09251 -20.81745 -20.29418 -18.54022 -17.83373 -17.37190 -16.47747 -16.24331 -15.60658 -15.28186 -15.16217 -15.01188 -14.80074 -14.61450 -14.42345 -13.93010 -13.49168 -13.36793 -13.07511 -13.03291 -12.54567 -12.40488 -12.21542 -12.13057 -12.00600 -11.95957 -11.59479 -11.43407 -11.22940 -11.16655 -10.88932 -10.82110 -10.16177 -9.76199 -9.24045 -8.40818 -6.30046 0.55006 1.23506 1.35388 1.53347 2.25130 2.52311 2.75479 2.94046 3.21779 3.76372 3.89807 3.95966 3.96760 4.06735 4.16350 4.27739 4.32145 4.42852 4.46884 4.63701 4.66229 4.70413 4.75176 4.83820 4.86446 4.93209 4.98001 5.12321 5.20539 5.22621 5.27341 5.32032 5.40258 5.45478 5.50522 5.53038 5.57676 5.67072 5.86908 5.98715 6.75841 6.91939 7.30780 7.87352 8.63734 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.007634 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.401261 B = 3667.126759 C = 4474.618614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.029 3.971 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.322 1.322 7 C -0.318 4.318 8 H 0.060 0.940 9 N -0.457 5.457 10 C 0.475 3.525 11 O -0.568 6.568 12 C -0.228 4.228 13 C -0.057 4.057 14 C -0.106 4.106 15 C -0.095 4.095 16 C -0.121 4.121 17 C -0.108 4.108 18 C -0.120 4.120 19 C -0.100 4.100 20 C 0.043 3.957 21 C -0.173 4.173 22 C -0.177 4.177 23 H 0.272 0.728 24 H 0.153 0.847 25 H 0.160 0.840 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.022 0.978 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.372 0.383 3.416 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.173 4.173 3 Si 0.813 3.187 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.254 1.254 7 C -0.446 4.446 8 H 0.077 0.923 9 N -0.177 5.177 10 C 0.271 3.729 11 O -0.456 6.456 12 C -0.248 4.248 13 C -0.077 4.077 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.158 4.158 17 C -0.146 4.146 18 C -0.157 4.157 19 C -0.137 4.137 20 C -0.061 4.061 21 C -0.210 4.210 22 C -0.215 4.215 23 H 0.081 0.919 24 H 0.170 0.830 25 H 0.177 0.823 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.166 0.834 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.889 0.720 3.831 18.309 hybrid contribution -0.992 0.548 -0.171 1.146 sum 16.898 1.269 3.660 17.336 Atomic orbital electron populations 1.69739 1.07778 1.28601 1.49818 1.26092 0.95663 1.02377 0.93190 0.85251 0.77079 0.78325 0.78036 1.19194 1.19757 1.25384 1.18467 0.80557 0.93346 1.52274 0.92262 1.43272 1.04739 1.40640 1.29011 1.19456 0.89458 0.82344 0.81684 1.90455 1.72169 1.48994 1.34001 1.22891 0.91718 1.06329 1.03900 1.23988 1.00262 0.90494 0.92958 1.21054 1.01663 0.97009 0.92680 1.21311 1.00262 0.95146 0.96519 1.21513 0.98434 1.00360 0.95533 1.21483 1.00034 0.95708 0.97336 1.21531 1.00257 0.96303 0.97623 1.21489 0.98600 1.00530 0.93084 1.22230 0.98512 0.90004 0.95379 1.23156 0.98961 1.03208 0.95695 1.23299 1.03534 0.94323 1.00337 0.91866 0.82954 0.82262 0.89378 0.90127 0.95859 0.95233 0.91621 0.91537 0.90091 0.94481 0.89916 0.92345 0.89894 0.83425 0.90992 0.85483 0.84858 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.29 13.95 21.69 0.30 -58.99 16 2 C 0.03 1.80 5.33 84.97 0.45 2.25 16 3 Si 0.98 53.78 24.30 68.60 1.67 55.44 16 4 H -0.27 -15.20 6.20 99.48 0.62 -14.58 16 5 H -0.27 -14.05 6.78 99.48 0.67 -13.38 16 6 H -0.32 -17.48 7.11 99.48 0.71 -16.77 16 7 C -0.32 -18.71 8.18 84.12 0.69 -18.02 16 8 H 0.06 3.78 7.72 -2.91 -0.02 3.76 16 9 N -0.46 -22.24 2.53 -617.35 -1.56 -23.81 16 10 C 0.47 22.39 5.01 86.52 0.43 22.83 16 11 O -0.57 -30.74 8.60 -4.23 -0.04 -30.77 16 12 C -0.23 -7.84 9.31 23.40 0.22 -7.62 16 13 C -0.06 -1.67 8.83 24.54 0.22 -1.45 16 14 C -0.11 -3.47 1.71 -11.54 -0.02 -3.49 16 15 C -0.09 -3.04 5.10 30.59 0.16 -2.89 16 16 C -0.12 -3.65 5.92 30.60 0.18 -3.47 16 17 C -0.11 -2.48 5.92 30.60 0.18 -2.30 16 18 C -0.12 -2.88 5.92 30.59 0.18 -2.70 16 19 C -0.10 -2.45 5.19 30.59 0.16 -2.29 16 20 C 0.04 1.56 5.92 44.99 0.27 1.83 16 21 C -0.17 -5.91 9.82 30.59 0.30 -5.61 16 22 C -0.18 -5.54 10.36 30.59 0.32 -5.23 16 23 H 0.27 16.60 8.31 -92.70 -0.77 15.83 16 24 H 0.15 4.05 6.20 -2.91 -0.02 4.03 16 25 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 26 H 0.09 3.86 4.76 -21.45 -0.10 3.76 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.15 4.20 6.32 -2.39 -0.02 4.18 16 38 H 0.07 3.08 6.87 -2.39 -0.02 3.06 16 39 H 0.13 3.29 8.14 -2.38 -0.02 3.27 16 40 H 0.13 2.98 8.14 -2.38 -0.02 2.96 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -75.38 316.07 4.88 -70.51 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.78 Total: 15.80 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 3.73 Total: -28.18 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.26 Total: -82.80 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.04 Total: -30.77 kcal Atomic # 14 Polarization: 53.78 SS G_CDS: 1.67 Total: 55.44 kcal Total: -75.38 4.88 -70.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491859859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.569 kcal (2) G-P(sol) polarization free energy of solvation -75.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds