Wall clock time and date at job start Mon Mar 30 2020 00:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38145 * 120.02921 * 2 1 4 4 C 1.38265 * 120.05315 * 180.30128 * 3 2 1 5 5 C 1.38267 * 120.11306 * 359.67611 * 4 3 2 6 6 C 1.38145 * 120.05371 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.02657 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94560 * 0.02562 * 6 5 4 9 9 O 1.35906 * 120.05538 * 180.02562 * 8 6 5 10 10 C 1.42899 * 116.99835 * 89.99977 * 9 8 6 11 11 C 1.52997 * 109.46788 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47289 * 175.00239 * 11 10 9 13 13 C 1.53006 * 109.47127 * 55.00286 * 11 10 9 14 14 N 1.46899 * 109.47254 * 295.00152 * 11 10 9 15 15 C 1.46903 * 110.99807 * 205.00073 * 14 11 10 16 16 C 1.50705 * 109.46848 * 179.97438 * 15 14 11 17 17 H 1.07991 * 120.00023 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99539 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00388 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99416 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46943 * 90.00625 * 20 18 16 22 22 H 1.48504 * 109.47012 * 209.99796 * 20 18 16 23 23 H 1.48500 * 109.47488 * 330.00108 * 20 18 16 24 24 H 1.08998 * 109.47289 * 270.29994 * 1 2 3 25 25 H 1.08999 * 109.47118 * 30.29793 * 1 2 3 26 26 H 1.08996 * 109.47037 * 150.29814 * 1 2 3 27 27 H 1.08000 * 119.97187 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.94204 * 179.70447 * 4 3 2 29 29 H 1.07999 * 119.97273 * 180.02562 * 5 4 3 30 30 H 1.08998 * 109.47399 * 269.98454 * 7 6 5 31 31 H 1.09005 * 109.47061 * 29.97936 * 7 6 5 32 32 H 1.09002 * 109.47047 * 149.97664 * 7 6 5 33 33 H 1.09004 * 109.47049 * 60.00423 * 10 9 8 34 34 H 1.08993 * 109.47255 * 300.00000 * 10 9 8 35 35 H 1.09001 * 109.47002 * 299.99574 * 13 11 10 36 36 H 1.08993 * 109.46955 * 60.00011 * 13 11 10 37 37 H 1.09000 * 109.47050 * 179.97438 * 13 11 10 38 38 H 1.00902 * 111.00121 * 81.04671 * 14 11 10 39 39 H 1.09000 * 109.47514 * 299.99609 * 15 14 11 40 40 H 1.08999 * 109.47620 * 60.00050 * 15 14 11 41 41 H 0.97001 * 119.99568 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5810 1.1966 -0.0063 5 6 4.2752 0.0008 -0.0058 6 6 3.5885 -1.1978 0.0004 7 6 4.3458 -2.5008 0.0014 8 6 2.2012 -1.2011 0.0056 9 8 1.5234 -2.3791 0.0123 10 6 1.2046 -2.9369 1.2887 11 6 0.4468 -4.2519 1.0956 12 1 0.2815 -4.7218 2.0651 13 6 1.2691 -5.1889 0.2084 14 7 -0.8474 -3.9818 0.4553 15 6 -1.8216 -5.0346 0.7726 16 6 -3.1341 -4.7236 0.1004 17 1 -3.2343 -3.8332 -0.5024 18 6 -4.2065 -5.5764 0.2544 19 7 -4.0842 -6.6609 0.9881 20 14 -5.8336 -5.1904 -0.5782 21 1 -5.8564 -5.8059 -1.9295 22 1 -6.9482 -5.7399 0.2348 23 1 -5.9897 -3.7188 -0.7018 24 1 -0.3634 0.0054 1.0276 25 1 -0.3633 0.8873 -0.5184 26 1 -0.3633 -0.8926 -0.5092 27 1 1.6584 2.1313 -0.0004 28 1 4.1196 2.1327 -0.0111 29 1 5.3552 0.0039 -0.0103 30 1 4.5242 -2.8182 -1.0259 31 1 5.2999 -2.3660 0.5110 32 1 3.7610 -3.2604 0.5202 33 1 0.5814 -2.2372 1.8456 34 1 2.1241 -3.1250 1.8428 35 1 1.4343 -4.7191 -0.7612 36 1 2.2293 -5.3893 0.6835 37 1 0.7294 -6.1259 0.0712 38 1 -0.7420 -3.8755 -0.5425 39 1 -1.4486 -5.9945 0.4153 40 1 -1.9684 -5.0807 1.8517 41 1 -4.8389 -7.2606 1.0966 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514825334.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:45 Heat of formation + Delta-G solvation = -31.631894 kcal Electronic energy + Delta-G solvation = -19889.626327 eV Core-core repulsion = 16962.007037 eV Total energy + Delta-G solvation = -2927.619290 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13187 -37.60331 -35.65902 -33.54305 -32.77403 -31.07701 -29.91948 -27.24511 -26.61496 -26.08161 -25.65788 -21.87860 -21.73150 -20.83397 -20.14764 -17.51065 -16.46601 -16.32467 -15.44905 -14.98808 -14.70271 -14.40671 -14.10208 -13.69990 -13.51479 -13.16060 -13.01467 -12.96132 -12.73294 -12.59579 -12.13079 -11.84668 -11.76667 -11.54058 -11.37308 -11.24996 -11.16222 -10.85365 -10.71387 -10.67470 -10.44524 -9.84504 -9.53093 -9.13514 -8.59081 -8.46655 -8.41270 -7.22689 -6.01133 -4.02446 1.24075 1.32471 3.33451 3.39404 3.44175 3.49419 4.09069 4.45018 4.78407 4.81432 4.95372 5.10312 5.21498 5.35011 5.37324 5.40982 5.48606 5.55414 5.61523 5.62906 5.72739 5.82249 5.82574 5.86984 5.93531 6.03791 6.11322 6.31324 6.39641 6.42819 6.43993 6.49391 6.66160 6.66915 6.84645 7.28038 7.47498 7.79560 7.84278 8.15824 8.45808 8.66165 9.07422 9.62395 11.09987 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027907 B = 0.004282 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.094780 B = 6536.751081 C = 7328.222508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.119 4.119 4 C -0.126 4.126 5 C -0.120 4.120 6 C -0.104 4.104 7 C -0.110 4.110 8 C 0.101 3.899 9 O -0.322 6.322 10 C 0.083 3.917 11 C 0.085 3.915 12 H 0.085 0.915 13 C -0.175 4.175 14 N -0.679 5.679 15 C 0.193 3.807 16 C -0.511 4.511 17 H 0.062 0.938 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.335 0.665 39 H -0.013 1.013 40 H 0.026 0.974 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.614 11.999 -0.541 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.137 4.137 4 C -0.144 4.144 5 C -0.138 4.138 6 C -0.105 4.105 7 C -0.166 4.166 8 C 0.058 3.942 9 O -0.239 6.239 10 C 0.009 3.991 11 C -0.026 4.026 12 H 0.103 0.897 13 C -0.234 4.234 14 N -0.310 5.310 15 C 0.066 3.934 16 C -0.550 4.550 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.726 3.274 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.153 0.847 39 H 0.005 0.995 40 H 0.044 0.956 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.205 12.141 -0.110 20.249 hybrid contribution -0.486 -0.507 -0.741 1.021 sum 15.718 11.634 -0.850 19.574 Atomic orbital electron populations 1.20739 0.90019 1.03589 1.02756 1.20363 0.97212 0.92376 0.99478 1.20940 0.94104 0.97207 1.01443 1.21069 0.94273 0.97827 1.01202 1.20859 0.99483 0.91617 1.01885 1.20233 0.93207 0.96022 1.01037 1.20699 0.99110 0.94316 1.02525 1.18439 0.89251 0.85835 1.00726 1.86021 1.74268 1.33957 1.29659 1.22909 0.97130 0.95630 0.83468 1.21567 0.90598 0.91423 0.99024 0.89679 1.22407 0.99640 1.00394 1.00964 1.60731 1.05892 1.48949 1.15384 1.19591 0.89606 0.87401 0.96775 1.21192 0.95648 1.07883 1.30288 0.91984 1.24982 0.99058 0.95016 0.95527 1.69963 1.31495 1.12801 1.39612 0.86504 0.83109 0.78609 0.79216 1.20763 1.21301 1.19774 0.91159 0.92001 0.89615 0.85991 0.86216 0.86146 0.91109 0.91974 0.91108 0.92396 0.93871 0.91972 0.93474 0.92501 0.84746 0.99498 0.95616 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.79 36.01 0.35 -1.20 16 2 C -0.09 -1.28 5.89 -104.47 -0.62 -1.89 16 3 C -0.12 -1.37 9.70 -39.61 -0.38 -1.76 16 4 C -0.13 -1.32 10.04 -39.56 -0.40 -1.71 16 5 C -0.12 -1.31 9.70 -39.60 -0.38 -1.69 16 6 C -0.10 -1.31 5.89 -104.47 -0.62 -1.93 16 7 C -0.11 -1.19 9.79 36.01 0.35 -0.83 16 8 C 0.10 1.46 5.67 -39.22 -0.22 1.24 16 9 O -0.32 -5.03 7.39 -19.45 -0.14 -5.17 16 10 C 0.08 1.27 5.53 37.16 0.21 1.48 16 11 C 0.09 1.48 2.99 -67.71 -0.20 1.28 16 12 H 0.09 1.51 7.80 -51.93 -0.40 1.11 16 13 C -0.18 -2.80 8.96 37.16 0.33 -2.47 16 14 N -0.68 -14.44 6.19 -107.99 -0.67 -15.11 16 15 C 0.19 5.01 5.24 -4.97 -0.03 4.99 16 16 C -0.51 -14.51 9.32 -34.44 -0.32 -14.83 16 17 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 20 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.08 1.34 7.53 -51.93 -0.39 0.95 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.07 0.82 6.33 -51.93 -0.33 0.49 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.58 7.26 -51.93 -0.38 0.20 16 35 H 0.06 1.00 7.55 -51.93 -0.39 0.61 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 1.00 7.45 -51.93 -0.39 0.61 16 38 H 0.34 7.15 8.46 -39.29 -0.33 6.81 16 39 H -0.01 -0.35 7.44 -51.93 -0.39 -0.74 16 40 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -30.06 338.60 -8.78 -38.83 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.76 Total: 3.56 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -2.02 Total: -17.84 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.07 Total: -41.29 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.14 Total: -5.17 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.06 -8.78 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514825334.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.203 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds