Wall clock time and date at job start Mon Mar 30 2020 00:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38288 * 119.97378 * 2 1 4 4 C 1.38239 * 120.11572 * 179.97438 * 3 2 1 5 5 C 1.38170 * 120.05201 * 0.04215 * 4 3 2 6 6 C 1.38705 * 119.94752 * 359.97438 * 5 4 3 7 7 O 1.35898 * 120.06154 * 180.02562 * 6 5 4 8 8 C 1.42902 * 116.99694 * 359.97438 * 7 6 5 9 9 C 1.53001 * 109.47386 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47181 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.46922 * 179.97438 * 10 9 8 12 12 C 1.46901 * 111.00142 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47286 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00032 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99807 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00264 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99745 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47393 * 60.00060 * 17 15 13 19 19 H 1.48502 * 109.47394 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47151 * 300.00043 * 17 15 13 21 21 C 1.38121 * 119.97413 * 180.02562 * 2 1 3 22 22 C 1.50705 * 120.02769 * 0.27127 * 21 2 1 23 23 H 1.09001 * 109.47297 * 269.98097 * 1 2 3 24 24 H 1.09004 * 109.47353 * 29.98231 * 1 2 3 25 25 H 1.09000 * 109.47209 * 149.97656 * 1 2 3 26 26 H 1.08000 * 119.94132 * 359.97438 * 3 2 1 27 27 H 1.07997 * 119.98060 * 180.02562 * 4 3 2 28 28 H 1.08005 * 120.02538 * 180.02562 * 5 4 3 29 29 H 1.08999 * 109.47292 * 300.00273 * 8 7 6 30 30 H 1.08998 * 109.47042 * 60.00021 * 8 7 6 31 31 H 1.08999 * 109.46920 * 300.00247 * 9 8 7 32 32 H 1.09006 * 109.47065 * 60.00159 * 9 8 7 33 33 H 1.08999 * 109.47370 * 299.99940 * 10 9 8 34 34 H 1.08993 * 109.47226 * 60.00294 * 10 9 8 35 35 H 1.00907 * 111.00018 * 56.04887 * 11 10 9 36 36 H 1.09002 * 109.47254 * 300.00445 * 12 11 10 37 37 H 1.08999 * 109.46787 * 59.99659 * 12 11 10 38 38 H 0.96999 * 119.99859 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.47390 * 269.73245 * 22 21 2 40 40 H 1.09008 * 109.46550 * 29.72586 * 22 21 2 41 41 H 1.08995 * 109.47476 * 149.72521 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2751 0.0071 0.0002 6 6 3.5846 -1.1958 -0.0002 7 8 4.2657 -2.3718 0.0000 8 6 5.6927 -2.2949 0.0000 9 6 6.2796 -3.7079 -0.0004 10 6 7.8073 -3.6255 0.0002 11 7 8.3707 -4.9822 0.0004 12 6 9.8392 -4.9424 0.0004 13 6 10.3799 -6.3490 0.0000 14 1 9.7006 -7.1887 -0.0006 15 6 11.7418 -6.5641 -0.0006 16 7 12.5690 -5.5417 -0.0003 17 14 12.4120 -8.3077 -0.0018 18 1 11.9358 -9.0202 -1.2145 19 1 13.8965 -8.2675 -0.0017 20 1 11.9366 -9.0216 1.2105 21 6 2.1970 -1.1965 -0.0005 22 6 1.4435 -2.5016 -0.0073 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6565 2.1324 -0.0004 27 1 4.1176 2.1382 0.0010 28 1 5.3552 0.0103 0.0010 29 1 6.0279 -1.7624 -0.8900 30 1 6.0278 -1.7622 0.8899 31 1 5.9444 -4.2408 0.8894 32 1 5.9444 -4.2403 -0.8906 33 1 8.1428 -3.0925 -0.8894 34 1 8.1421 -3.0934 0.8906 35 1 8.0239 -5.5180 -0.7811 36 1 10.1885 -4.4190 -0.8896 37 1 10.1884 -4.4187 0.8903 38 1 13.5271 -5.6930 -0.0011 39 1 1.2618 -2.8216 1.0187 40 1 0.4911 -2.3686 -0.5205 41 1 2.0326 -3.2586 -0.5251 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514856753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:32 Heat of formation + Delta-G solvation = -35.459808 kcal Electronic energy + Delta-G solvation = -18635.565668 eV Core-core repulsion = 15707.780387 eV Total energy + Delta-G solvation = -2927.785281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.43538 -38.01568 -35.84149 -33.55693 -33.06032 -31.80765 -30.67425 -27.57929 -27.11226 -26.38762 -24.35503 -21.89491 -21.72013 -21.19976 -20.41892 -17.75278 -16.42879 -16.39563 -16.28582 -15.79886 -14.95305 -14.62197 -14.52033 -14.18155 -13.85348 -13.37008 -13.23531 -12.99273 -12.94477 -12.61883 -12.48170 -12.08226 -11.87246 -11.79442 -11.54684 -11.37165 -11.15126 -11.01595 -10.77054 -10.69286 -10.65732 -10.41450 -9.91964 -9.22214 -8.79564 -8.49386 -8.21873 -7.35401 -6.04702 -4.06942 1.13413 1.30055 3.10125 3.33313 3.36944 3.40345 3.55876 4.41972 4.57593 4.61705 4.79870 4.91488 4.97172 5.01049 5.02012 5.17653 5.27847 5.30683 5.31722 5.45204 5.47725 5.56816 5.58164 5.62705 5.68950 5.75879 5.83944 5.99299 6.09853 6.23526 6.29702 6.37399 6.41100 6.45228 6.67892 7.20757 7.35678 7.38664 7.75890 8.10013 8.34935 8.57463 9.01863 9.58001 11.06443 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.052803 B = 0.002544 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.141828 B =11005.618586 C =11492.088174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.054 4.054 3 C -0.161 4.161 4 C -0.082 4.082 5 C -0.213 4.213 6 C 0.138 3.862 7 O -0.311 6.311 8 C 0.062 3.938 9 C -0.114 4.114 10 C 0.063 3.937 11 N -0.690 5.690 12 C 0.194 3.806 13 C -0.516 4.516 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.901 3.099 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.122 4.122 22 C -0.108 4.108 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.129 0.871 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.020 0.980 34 H 0.066 0.934 35 H 0.330 0.670 36 H -0.013 1.013 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.707 13.193 -0.813 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.179 4.179 4 C -0.101 4.101 5 C -0.231 4.231 6 C 0.092 3.908 7 O -0.224 6.224 8 C -0.014 4.014 9 C -0.152 4.152 10 C -0.067 4.067 11 N -0.320 5.320 12 C 0.067 3.933 13 C -0.554 4.554 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.729 3.271 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.123 4.123 22 C -0.164 4.164 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.005 0.995 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.600 12.957 -0.122 26.051 hybrid contribution 1.064 -0.254 -0.888 1.409 sum -21.536 12.703 -1.010 25.024 Atomic orbital electron populations 1.20862 0.90988 1.02946 1.02499 1.19565 0.95885 0.91888 0.98071 1.20876 0.94139 0.97334 1.05535 1.20896 0.94145 0.97373 0.97641 1.21292 1.00478 0.92235 1.09135 1.18841 0.91246 0.84998 0.95700 1.86060 1.20599 1.27719 1.88024 1.22872 0.77359 0.99823 1.01338 1.21533 0.95768 0.93962 1.03957 1.21737 0.91787 0.93177 1.00020 1.60652 1.11480 1.10877 1.49023 1.19563 0.80469 0.97422 0.95822 1.21149 0.91446 0.92293 1.50556 0.91942 1.25003 0.96959 0.97386 0.95287 1.69953 1.02920 1.30143 1.50773 0.86512 0.77529 0.84384 0.78687 1.20232 1.21332 1.20110 1.19090 0.90386 0.95980 1.06808 1.20671 0.99404 0.94001 1.02314 0.90957 0.91517 0.90944 0.86162 0.85931 0.85359 0.92149 0.91890 0.90120 0.91233 0.96189 0.91561 0.85389 0.99549 0.95377 0.92820 0.91422 0.91513 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.61 36.00 0.35 -0.45 16 2 C -0.05 -0.53 5.88 -104.65 -0.62 -1.15 16 3 C -0.16 -1.53 9.70 -39.56 -0.38 -1.91 16 4 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 5 C -0.21 -2.44 9.04 -39.43 -0.36 -2.80 16 6 C 0.14 1.76 6.66 -39.22 -0.26 1.49 16 7 O -0.31 -4.21 9.19 -19.42 -0.18 -4.38 16 8 C 0.06 0.77 4.74 37.16 0.18 0.95 16 9 C -0.11 -1.63 5.84 -26.73 -0.16 -1.79 16 10 C 0.06 1.10 5.69 -3.83 -0.02 1.07 16 11 N -0.69 -14.91 6.49 -115.06 -0.75 -15.65 16 12 C 0.19 5.13 5.44 -4.98 -0.03 5.11 16 13 C -0.52 -14.76 9.32 -34.44 -0.32 -15.08 16 14 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.12 -1.40 5.89 -104.47 -0.62 -2.01 16 22 C -0.11 -1.04 9.38 36.01 0.34 -0.71 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 25 H 0.07 0.45 5.94 -51.93 -0.31 0.14 16 26 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 27 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.13 1.34 6.30 -52.48 -0.33 1.01 16 29 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 30 H 0.06 0.75 7.66 -51.93 -0.40 0.35 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.33 6.76 8.72 -39.29 -0.34 6.42 16 36 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.51 5.94 -51.92 -0.31 0.21 16 41 H 0.07 0.76 7.54 -51.93 -0.39 0.37 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -31.10 337.72 -9.18 -40.28 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.67 Total: 1.17 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -2.39 Total: -17.01 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.01 Total: -41.91 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.18 Total: -4.38 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.10 -9.18 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514856753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.823 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds