Wall clock time and date at job start Mon Mar 30 2020 00:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38288 * 119.97378 * 2 1 4 4 C 1.38239 * 120.11572 * 179.97438 * 3 2 1 5 5 C 1.38170 * 120.05201 * 0.04215 * 4 3 2 6 6 C 1.38705 * 119.94752 * 359.97438 * 5 4 3 7 7 O 1.35898 * 120.06154 * 180.02562 * 6 5 4 8 8 C 1.42902 * 116.99694 * 359.97438 * 7 6 5 9 9 C 1.53001 * 109.47386 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47181 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.46922 * 179.97438 * 10 9 8 12 12 C 1.46901 * 111.00142 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47286 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00032 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99807 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00264 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99745 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47393 * 60.00060 * 17 15 13 19 19 H 1.48502 * 109.47394 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47151 * 300.00043 * 17 15 13 21 21 C 1.38121 * 119.97413 * 180.02562 * 2 1 3 22 22 C 1.50705 * 120.02769 * 0.27127 * 21 2 1 23 23 H 1.09001 * 109.47297 * 269.98097 * 1 2 3 24 24 H 1.09004 * 109.47353 * 29.98231 * 1 2 3 25 25 H 1.09000 * 109.47209 * 149.97656 * 1 2 3 26 26 H 1.08000 * 119.94132 * 359.97438 * 3 2 1 27 27 H 1.07997 * 119.98060 * 180.02562 * 4 3 2 28 28 H 1.08005 * 120.02538 * 180.02562 * 5 4 3 29 29 H 1.08999 * 109.47292 * 300.00273 * 8 7 6 30 30 H 1.08998 * 109.47042 * 60.00021 * 8 7 6 31 31 H 1.08999 * 109.46920 * 300.00247 * 9 8 7 32 32 H 1.09006 * 109.47065 * 60.00159 * 9 8 7 33 33 H 1.08999 * 109.47370 * 299.99940 * 10 9 8 34 34 H 1.08993 * 109.47226 * 60.00294 * 10 9 8 35 35 H 1.00907 * 111.00018 * 56.04887 * 11 10 9 36 36 H 1.09002 * 109.47254 * 300.00445 * 12 11 10 37 37 H 1.08999 * 109.46787 * 59.99659 * 12 11 10 38 38 H 0.96999 * 119.99859 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.47390 * 269.73245 * 22 21 2 40 40 H 1.09008 * 109.46550 * 29.72586 * 22 21 2 41 41 H 1.08995 * 109.47476 * 149.72521 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2751 0.0071 0.0002 6 6 3.5846 -1.1958 -0.0002 7 8 4.2657 -2.3718 0.0000 8 6 5.6927 -2.2949 0.0000 9 6 6.2796 -3.7079 -0.0004 10 6 7.8073 -3.6255 0.0002 11 7 8.3707 -4.9822 0.0004 12 6 9.8392 -4.9424 0.0004 13 6 10.3799 -6.3490 0.0000 14 1 9.7006 -7.1887 -0.0006 15 6 11.7418 -6.5641 -0.0006 16 7 12.5690 -5.5417 -0.0003 17 14 12.4120 -8.3077 -0.0018 18 1 11.9358 -9.0202 -1.2145 19 1 13.8965 -8.2675 -0.0017 20 1 11.9366 -9.0216 1.2105 21 6 2.1970 -1.1965 -0.0005 22 6 1.4435 -2.5016 -0.0073 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6565 2.1324 -0.0004 27 1 4.1176 2.1382 0.0010 28 1 5.3552 0.0103 0.0010 29 1 6.0279 -1.7624 -0.8900 30 1 6.0278 -1.7622 0.8899 31 1 5.9444 -4.2408 0.8894 32 1 5.9444 -4.2403 -0.8906 33 1 8.1428 -3.0925 -0.8894 34 1 8.1421 -3.0934 0.8906 35 1 8.0239 -5.5180 -0.7811 36 1 10.1885 -4.4190 -0.8896 37 1 10.1884 -4.4187 0.8903 38 1 13.5271 -5.6930 -0.0011 39 1 1.2618 -2.8216 1.0187 40 1 0.4911 -2.3686 -0.5205 41 1 2.0326 -3.2586 -0.5251 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514856753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:31 Heat of formation + Delta-G solvation = -53.974101 kcal Electronic energy + Delta-G solvation = -18636.368508 eV Core-core repulsion = 15707.780387 eV Total energy + Delta-G solvation = -2928.588121 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28419 -38.92074 -37.47725 -34.97284 -34.28849 -33.16964 -31.77138 -28.84646 -28.28278 -27.28681 -25.82348 -23.53141 -22.76061 -22.57122 -21.31206 -18.77715 -18.40065 -17.44498 -17.25697 -16.72338 -16.60321 -16.25388 -15.47145 -15.15799 -15.01512 -14.78740 -14.25119 -14.19349 -13.92713 -13.69437 -13.57813 -13.35613 -13.09147 -12.91516 -12.74019 -12.63140 -12.47651 -12.31199 -12.20138 -12.15159 -11.93898 -11.56860 -11.54985 -11.33388 -10.67100 -9.55264 -9.18749 -9.06446 -8.24273 -6.35849 0.35628 0.48823 1.41185 1.44986 1.52998 2.12700 2.40021 2.77209 3.09018 3.54416 3.85126 3.86028 3.90376 4.09136 4.13679 4.15635 4.27606 4.33584 4.41651 4.48747 4.53801 4.63808 4.71714 4.79043 4.87119 4.89074 4.98954 5.00733 5.08613 5.15452 5.18979 5.24738 5.39155 5.44542 5.52825 5.59380 5.67941 5.91995 5.99105 6.39486 6.45770 6.68292 6.85707 7.35131 8.87230 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.052803 B = 0.002544 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.141828 B =11005.618586 C =11492.088174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.162 4.162 4 C -0.089 4.089 5 C -0.227 4.227 6 C 0.109 3.891 7 O -0.325 6.325 8 C 0.068 3.932 9 C -0.100 4.100 10 C 0.065 3.935 11 N -0.691 5.691 12 C 0.207 3.793 13 C -0.539 4.539 14 H 0.065 0.935 15 C 0.000 4.000 16 N -0.934 5.934 17 Si 0.976 3.024 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.268 1.268 21 C -0.140 4.140 22 C -0.105 4.105 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.132 0.868 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.337 0.663 36 H -0.037 1.037 37 H 0.001 0.999 38 H 0.266 0.734 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.236 13.350 -0.975 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.059 4.059 3 C -0.180 4.180 4 C -0.107 4.107 5 C -0.246 4.246 6 C 0.064 3.936 7 O -0.239 6.239 8 C -0.008 4.008 9 C -0.138 4.138 10 C -0.065 4.065 11 N -0.322 5.322 12 C 0.079 3.921 13 C -0.577 4.577 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.800 3.200 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.193 1.193 21 C -0.141 4.141 22 C -0.161 4.161 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.164 0.836 27 H 0.162 0.838 28 H 0.150 0.850 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.154 0.846 36 H -0.019 1.019 37 H 0.019 0.981 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.163 13.124 -0.288 27.498 hybrid contribution 1.461 -0.191 -0.834 1.693 sum -22.702 12.933 -1.121 26.152 Atomic orbital electron populations 1.20929 0.88788 1.04038 1.03411 1.19972 0.97566 0.91426 0.96967 1.21263 0.94159 0.98346 1.04266 1.21225 0.94761 0.97699 0.96999 1.21468 1.00882 0.92562 1.09689 1.19152 0.91978 0.84986 0.97484 1.86002 1.20588 1.28670 1.88626 1.22723 0.77488 0.98487 1.02070 1.21304 0.93301 0.95299 1.03873 1.21765 0.93755 0.90899 1.00086 1.60514 1.08656 1.13544 1.49504 1.19222 0.83324 0.96138 0.93369 1.21528 0.92136 0.93166 1.50911 0.91649 1.25989 0.97242 1.02118 0.94488 1.70082 1.03347 1.32644 1.51336 0.85344 0.76850 0.78646 0.79210 1.19002 1.20734 1.19309 1.19426 0.90224 0.97287 1.07170 1.20676 0.99940 0.93005 1.02525 0.89990 0.89966 0.90354 0.83631 0.83813 0.85044 0.91334 0.91315 0.90694 0.90804 0.95713 0.91839 0.84566 1.01907 0.98078 0.92535 0.91206 0.89471 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.61 71.23 0.68 -0.60 16 2 C -0.06 -1.06 5.88 -19.88 -0.12 -1.18 16 3 C -0.16 -2.73 9.70 22.28 0.22 -2.51 16 4 C -0.09 -1.64 10.04 22.25 0.22 -1.42 16 5 C -0.23 -5.10 9.04 22.37 0.20 -4.90 16 6 C 0.11 2.76 6.66 22.51 0.15 2.91 16 7 O -0.32 -8.83 9.19 -92.40 -0.85 -9.67 16 8 C 0.07 1.69 4.74 71.98 0.34 2.03 16 9 C -0.10 -2.83 5.84 30.59 0.18 -2.65 16 10 C 0.06 2.26 5.69 86.30 0.49 2.75 16 11 N -0.69 -30.21 6.49 -517.95 -3.36 -33.57 16 12 C 0.21 11.28 5.44 85.56 0.47 11.74 16 13 C -0.54 -31.16 9.32 25.60 0.24 -30.93 16 14 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 16 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 17 Si 0.98 44.49 29.54 68.60 2.03 46.51 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 C -0.14 -3.11 5.89 -19.77 -0.12 -3.23 16 22 C -0.11 -1.97 9.38 71.24 0.67 -1.30 16 23 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.08 0.67 8.09 -2.38 -0.02 0.65 16 25 H 0.08 0.78 5.94 -2.39 -0.01 0.76 16 26 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 27 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 28 H 0.13 2.71 6.30 -2.91 -0.02 2.69 16 29 H 0.07 1.58 7.66 -2.39 -0.02 1.57 16 30 H 0.07 1.62 7.66 -2.39 -0.02 1.60 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.34 13.85 8.72 -89.69 -0.78 13.07 16 36 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 16 37 H 0.00 0.06 8.14 -2.39 -0.02 0.05 16 38 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.21 5.94 -2.38 -0.01 1.20 16 41 H 0.06 1.21 7.54 -2.39 -0.02 1.19 16 Total: -1.00 -66.88 337.72 2.41 -64.47 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.22 Total: 17.64 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 4.09 Total: -28.83 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -3.08 Total: -90.12 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.85 Total: -9.67 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -66.88 2.41 -64.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514856753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.495 kcal (2) G-P(sol) polarization free energy of solvation -66.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds