Wall clock time and date at job start Mon Mar 30 2020 00:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38252 * 119.99996 * 2 1 4 4 C 1.38219 * 120.00284 * 179.78652 * 3 2 1 5 5 C 1.38258 * 119.99522 * 0.42260 * 4 3 2 6 6 C 1.50703 * 119.99670 * 179.80753 * 5 4 3 7 7 C 1.53000 * 109.46912 * 269.72692 * 6 5 4 8 8 H 1.08990 * 109.47170 * 54.99987 * 7 6 5 9 9 C 1.53002 * 109.46776 * 175.00090 * 7 6 5 10 10 O 1.42897 * 109.47325 * 55.00090 * 9 7 6 11 11 N 1.46901 * 109.47143 * 294.99665 * 7 6 5 12 12 C 1.46900 * 110.99981 * 155.00000 * 11 7 6 13 13 C 1.50705 * 109.47101 * 180.02562 * 12 11 7 14 14 H 1.07997 * 119.99750 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99964 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00225 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00028 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47056 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46911 * 119.99871 * 17 15 13 20 20 H 1.48492 * 109.47132 * 239.99906 * 17 15 13 21 21 C 1.38210 * 120.00186 * 359.53557 * 5 4 3 22 22 C 1.38214 * 120.00304 * 179.97438 * 2 1 3 23 23 C 1.50705 * 120.00158 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.47568 * 270.02022 * 1 2 3 25 25 H 1.08991 * 109.47449 * 30.02379 * 1 2 3 26 26 H 1.09006 * 109.47018 * 150.02801 * 1 2 3 27 27 H 1.08003 * 119.99960 * 0.02562 * 3 2 1 28 28 H 1.07994 * 119.99956 * 180.22917 * 4 3 2 29 29 H 1.09002 * 109.47152 * 149.72463 * 6 5 4 30 30 H 1.09001 * 109.46980 * 29.72564 * 6 5 4 31 31 H 1.08998 * 109.46841 * 174.99620 * 9 7 6 32 32 H 1.08999 * 109.47497 * 294.99680 * 9 7 6 33 33 H 0.96695 * 114.00413 * 180.02562 * 10 9 7 34 34 H 1.00900 * 111.00332 * 278.96049 * 11 7 6 35 35 H 1.08996 * 109.47628 * 300.00315 * 12 11 7 36 36 H 1.09001 * 109.46729 * 60.00435 * 12 11 7 37 37 H 0.97001 * 120.00066 * 179.97438 * 16 15 13 38 38 H 1.08002 * 120.00083 * 180.25974 * 21 5 4 39 39 H 1.09000 * 109.46781 * 270.02481 * 23 22 2 40 40 H 1.09004 * 109.46674 * 30.01973 * 23 22 2 41 41 H 1.08992 * 109.47251 * 150.02097 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0045 5 6 4.2717 0.0000 0.0001 6 6 5.7787 0.0001 0.0006 7 6 6.2891 -0.0012 -1.4418 8 1 5.8546 0.8400 -1.9817 9 6 7.8139 0.1245 -1.4432 10 8 8.3782 -0.9125 -0.6382 11 7 5.9008 -1.2571 -2.0975 12 6 5.8224 -1.0879 -3.5546 13 6 5.4217 -2.3939 -4.1911 14 1 5.2428 -3.2625 -3.5748 15 6 5.2836 -2.4797 -5.5602 16 7 5.5019 -1.4220 -6.3108 17 14 4.7863 -4.0982 -6.3492 18 1 4.6007 -5.1267 -5.2942 19 1 3.5133 -3.9163 -7.0919 20 1 5.8489 -4.5381 -7.2886 21 6 3.5806 -1.1969 0.0010 22 6 2.1981 -1.1969 0.0005 23 6 1.4447 -2.5021 0.0005 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8903 -0.5134 27 1 1.6582 2.1326 0.0004 28 1 4.1203 2.1327 0.0082 29 1 6.1419 -0.8894 0.5154 30 1 6.1418 0.8906 0.5137 31 1 8.1849 0.0344 -2.4642 32 1 8.0989 1.0952 -1.0374 33 1 9.3439 -0.8941 -0.5931 34 1 6.5346 -2.0034 -1.8537 35 1 5.0806 -0.3256 -3.7925 36 1 6.7954 -0.7801 -3.9374 37 1 5.4051 -1.4825 -7.2740 38 1 4.1207 -2.1323 0.0018 39 1 1.2623 -2.8163 1.0282 40 1 0.4926 -2.3720 -0.5140 41 1 2.0341 -3.2619 -0.5125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516570660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:11 Heat of formation + Delta-G solvation = -46.801376 kcal Electronic energy + Delta-G solvation = -19982.398603 eV Core-core repulsion = 17054.121515 eV Total energy + Delta-G solvation = -2928.277088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.33190 -37.56400 -34.99560 -33.65983 -32.35717 -31.72908 -29.86372 -27.59191 -26.59661 -25.65505 -24.30073 -21.89252 -21.50319 -20.37412 -19.38740 -17.17621 -16.33941 -15.51438 -15.44817 -14.74165 -14.67002 -14.47945 -14.07708 -13.97483 -13.45466 -13.06028 -12.73446 -12.54645 -12.40477 -12.29732 -12.12767 -11.78630 -11.65706 -11.40194 -11.29568 -11.03134 -10.81613 -10.62010 -10.52302 -10.37591 -10.26984 -9.89986 -9.66977 -9.12565 -8.44987 -8.21760 -7.92677 -7.15358 -5.99714 -4.00414 1.80667 1.91285 3.32600 3.39775 3.45157 4.17904 4.45187 4.55053 5.10948 5.14902 5.22115 5.30325 5.36668 5.39696 5.47632 5.54867 5.62512 5.68513 5.73777 5.77218 5.89472 5.92202 5.97871 6.06746 6.13325 6.18630 6.26339 6.33252 6.50280 6.64213 6.69118 6.89681 7.08281 7.21213 7.31318 7.48924 7.53642 7.81458 7.86196 8.18851 8.51438 8.71077 9.09641 9.64195 11.11610 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.006737 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.707591 B = 4154.869205 C = 5600.907893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.123 4.123 4 C -0.128 4.128 5 C -0.059 4.059 6 C -0.062 4.062 7 C 0.095 3.905 8 H 0.080 0.920 9 C 0.045 3.955 10 O -0.566 6.566 11 N -0.675 5.675 12 C 0.195 3.805 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.076 4.076 22 C -0.089 4.089 23 C -0.115 4.115 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.372 0.628 34 H 0.337 0.663 35 H 0.025 0.975 36 H -0.017 1.017 37 H 0.259 0.741 38 H 0.122 0.878 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 4.231 14.032 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.059 4.059 6 C -0.100 4.100 7 C -0.016 4.016 8 H 0.098 0.902 9 C -0.034 4.034 10 O -0.371 6.371 11 N -0.305 5.305 12 C 0.069 3.931 13 C -0.545 4.545 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.094 4.094 22 C -0.089 4.089 23 C -0.171 4.171 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.217 0.783 34 H 0.154 0.846 35 H 0.043 0.957 36 H 0.000 1.000 37 H 0.069 0.931 38 H 0.140 0.860 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.939 4.226 14.002 15.147 hybrid contribution 1.378 -0.388 -1.155 1.840 sum -2.561 3.838 12.847 13.650 Atomic orbital electron populations 1.20787 0.92086 1.02477 1.01514 1.19602 0.95390 0.92882 1.02264 1.20805 0.94147 0.96899 1.02275 1.20909 0.94036 0.97360 1.02328 1.19701 0.95473 0.92793 0.97935 1.20504 0.90857 1.01967 0.96700 1.21610 0.89288 0.95928 0.94810 0.90164 1.23034 0.97051 0.89359 0.94006 1.86467 1.24622 1.53763 1.72221 1.60651 1.54118 1.03935 1.11784 1.19559 0.94905 0.97544 0.81114 1.21208 1.45536 0.96387 0.91390 0.92007 1.24975 0.95697 0.96611 0.97339 1.69974 1.50197 1.28785 1.05015 0.86468 0.78056 0.83813 0.79245 1.19651 1.21072 1.21169 1.20846 0.92707 0.98054 0.97825 1.19708 0.93967 0.94479 1.00748 1.20817 1.00069 0.94760 1.01453 0.91907 0.92152 0.91412 0.87001 0.86990 0.90546 0.92181 0.93313 0.94419 0.78270 0.84571 0.95696 0.99977 0.93091 0.85956 0.91919 0.91632 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.60 36.00 0.35 -0.98 16 2 C -0.10 -1.53 5.88 -104.63 -0.62 -2.14 16 3 C -0.12 -1.84 9.70 -39.58 -0.38 -2.22 16 4 C -0.13 -1.99 9.70 -39.58 -0.38 -2.38 16 5 C -0.06 -0.99 4.95 -104.62 -0.52 -1.50 16 6 C -0.06 -0.98 4.75 -27.88 -0.13 -1.11 16 7 C 0.10 1.70 2.40 -67.71 -0.16 1.54 16 8 H 0.08 1.53 7.80 -51.93 -0.41 1.12 16 9 C 0.05 0.70 6.72 37.16 0.25 0.95 16 10 O -0.57 -8.25 12.24 -35.23 -0.43 -8.68 16 11 N -0.67 -14.58 5.62 -107.99 -0.61 -15.19 16 12 C 0.20 5.17 5.24 -4.97 -0.03 5.14 16 13 C -0.51 -14.56 9.32 -34.44 -0.32 -14.88 16 14 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 17 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C -0.08 -1.32 8.96 -39.59 -0.35 -1.67 16 22 C -0.09 -1.43 5.88 -104.62 -0.62 -2.05 16 23 C -0.11 -1.55 9.60 36.01 0.35 -1.20 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.07 0.77 5.95 -51.93 -0.31 0.46 16 27 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.08 1.24 7.67 -51.93 -0.40 0.84 16 30 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 31 H 0.05 0.84 7.35 -51.93 -0.38 0.46 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.37 3.67 9.12 45.56 0.42 4.08 16 34 H 0.34 7.33 7.93 -39.29 -0.31 7.01 16 35 H 0.02 0.72 8.05 -51.93 -0.42 0.31 16 36 H -0.02 -0.49 7.36 -51.93 -0.38 -0.87 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.81 5.95 -51.93 -0.31 0.50 16 41 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -31.86 336.33 -8.76 -40.63 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.84 Total: 8.66 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.67 Total: -21.03 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.13 Total: -41.72 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.43 Total: -8.68 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.86 -8.76 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516570660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.176 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds