Wall clock time and date at job start Mon Mar 30 2020 00:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.47270 * 39.99688 * 8 7 2 10 10 C 1.53004 * 109.47134 * 279.99404 * 8 7 2 11 11 O 1.42895 * 109.47227 * 305.00758 * 10 8 7 12 12 N 1.46899 * 109.46843 * 159.99827 * 8 7 2 13 13 C 1.46906 * 110.99943 * 204.99449 * 12 8 7 14 14 C 1.52998 * 109.46997 * 179.97438 * 13 12 8 15 15 C 1.53001 * 109.47001 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47150 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99892 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00100 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00095 * 359.97438 * 18 16 15 21 21 H 1.48490 * 109.47168 * 90.00392 * 20 18 16 22 22 H 1.48498 * 109.46850 * 210.00396 * 20 18 16 23 23 H 1.48502 * 109.47022 * 330.00319 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 27 27 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 29 29 H 1.08001 * 119.99773 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.00080 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.46654 * 65.00444 * 10 8 7 32 32 H 1.09003 * 109.47107 * 185.00055 * 10 8 7 33 33 H 0.96698 * 114.00260 * 179.97438 * 11 10 8 34 34 H 1.00893 * 111.00185 * 328.95381 * 12 8 7 35 35 H 1.08997 * 109.47256 * 299.99978 * 13 12 8 36 36 H 1.09001 * 109.46488 * 60.00285 * 13 12 8 37 37 H 1.08997 * 109.47701 * 300.00106 * 14 13 12 38 38 H 1.09001 * 109.47192 * 60.00811 * 14 13 12 39 39 H 1.08992 * 109.47692 * 300.00379 * 15 14 13 40 40 H 1.09001 * 109.46436 * 60.00409 * 15 14 13 41 41 H 0.96999 * 120.00898 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0016 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 1 0.5814 -2.4261 -0.6496 10 6 0.9722 -2.8119 1.4335 11 8 2.0917 -2.7963 2.3214 12 7 2.3270 -3.5790 -0.4568 13 6 1.5486 -4.6879 -1.0246 14 6 2.5000 -5.7874 -1.5010 15 6 1.6892 -6.9426 -2.0917 16 6 2.6263 -8.0259 -2.5604 17 1 3.6933 -7.9029 -2.4477 18 6 2.1213 -9.1740 -3.1329 19 7 2.9390 -10.1196 -3.5414 20 14 0.2757 -9.3871 -3.3271 21 1 -0.1500 -8.8420 -4.6411 22 1 -0.0661 -10.8305 -3.2559 23 1 -0.4240 -8.6584 -2.2387 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6583 2.1327 -0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 0.0001 0.0024 30 1 4.1206 -2.1322 0.0029 31 1 0.2486 -2.0598 1.7479 32 1 0.5052 -3.7966 1.4547 33 1 1.8659 -2.9848 3.2425 34 1 2.9999 -3.2310 -1.1233 35 1 0.8803 -5.0900 -0.2632 36 1 0.9617 -4.3251 -1.8684 37 1 3.1680 -5.3851 -2.2625 38 1 3.0873 -6.1503 -0.6574 39 1 1.0215 -7.3449 -1.3299 40 1 1.1017 -6.5800 -2.9351 41 1 2.5838 -10.9275 -3.9439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543840521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:32 Heat of formation + Delta-G solvation = -59.319554 kcal Electronic energy + Delta-G solvation = -19519.687722 eV Core-core repulsion = 16590.867805 eV Total energy + Delta-G solvation = -2928.819917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83643 -38.30716 -36.95581 -35.45887 -34.09785 -33.48089 -31.64952 -29.39289 -27.92131 -27.57266 -24.51158 -23.74764 -22.22368 -21.82145 -20.97924 -18.93608 -18.39429 -17.73558 -16.75793 -16.51979 -16.18252 -15.94578 -15.46021 -15.28203 -14.91540 -14.74065 -14.55230 -14.16544 -13.97122 -13.79784 -13.56857 -13.36652 -13.12167 -12.84732 -12.76152 -12.48399 -12.25861 -11.88100 -11.79597 -11.64607 -11.50582 -11.48688 -11.26216 -10.76560 -10.71456 -9.63580 -9.49186 -9.29659 -8.29317 -6.34004 0.47857 0.55800 1.35752 1.38377 1.50641 2.36709 2.88986 3.05742 3.10046 3.45988 3.77412 4.02203 4.10147 4.18243 4.22086 4.26886 4.35668 4.47527 4.51870 4.58490 4.64654 4.70347 4.76614 4.81107 4.86916 4.93253 4.96146 5.02433 5.10992 5.21039 5.33869 5.50033 5.59282 5.62500 5.66149 5.68395 5.73076 6.12655 6.20747 6.29754 6.40223 6.74366 7.02595 7.30520 8.87906 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029667 B = 0.003666 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.568872 B = 7635.515184 C = 7869.011931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.126 4.126 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.088 4.088 8 C 0.124 3.876 9 H 0.073 0.927 10 C 0.092 3.908 11 O -0.573 6.573 12 N -0.683 5.683 13 C 0.069 3.931 14 C -0.090 4.090 15 C -0.008 4.008 16 C -0.535 4.535 17 H 0.027 0.973 18 C 0.000 4.000 19 N -0.954 5.954 20 Si 0.956 3.044 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.244 1.244 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.386 0.614 34 H 0.341 0.659 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.021 0.979 40 H 0.020 0.980 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 25.296 10.289 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.144 4.144 5 C -0.157 4.157 6 C -0.128 4.128 7 C -0.088 4.088 8 C 0.014 3.986 9 H 0.090 0.910 10 C 0.014 3.986 11 O -0.379 6.379 12 N -0.316 5.316 13 C -0.059 4.059 14 C -0.128 4.128 15 C -0.046 4.046 16 C -0.573 4.573 17 H 0.045 0.955 18 C -0.196 4.196 19 N -0.595 5.595 20 Si 0.779 3.221 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.167 1.167 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.234 0.766 34 H 0.161 0.839 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.224 24.980 10.284 27.964 hybrid contribution -0.552 -0.623 -0.661 1.063 sum -7.776 24.357 9.624 27.319 Atomic orbital electron populations 1.20961 0.89904 1.03750 1.03026 1.20008 0.97157 0.92383 0.99919 1.21269 0.94494 0.97859 1.01090 1.21420 0.94694 0.98477 0.99771 1.21369 1.00656 0.92586 1.01087 1.21096 0.94183 0.98543 0.98967 1.19683 0.93950 0.93800 1.01376 1.20584 0.94467 0.87743 0.95782 0.90965 1.22197 0.87955 0.99627 0.88809 1.86574 1.34708 1.94523 1.22128 1.60547 1.17605 1.09377 1.44024 1.21969 0.95352 0.91291 0.97329 1.21244 0.97777 0.94741 0.99023 1.19478 0.95635 0.93650 0.95875 1.21526 0.93799 1.02573 1.39416 0.95468 1.26105 1.03886 0.95194 0.94451 1.70080 1.37507 1.08897 1.42995 0.85570 0.79066 0.77511 0.79955 1.19033 1.20950 1.16718 0.90590 0.89917 0.91131 0.84029 0.84114 0.85135 0.86403 0.91642 0.93655 0.76589 0.83895 0.91006 0.94782 0.93746 0.93525 0.96023 0.96181 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.27 71.24 0.66 -1.04 16 2 C -0.09 -1.86 5.88 -19.87 -0.12 -1.98 16 3 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 4 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 5 C -0.14 -3.00 10.05 22.27 0.22 -2.77 16 6 C -0.11 -2.77 8.84 22.27 0.20 -2.57 16 7 C -0.09 -2.07 4.52 -19.87 -0.09 -2.16 16 8 C 0.12 2.94 1.95 44.17 0.09 3.02 16 9 H 0.07 1.58 6.94 -2.39 -0.02 1.56 16 10 C 0.09 1.96 6.59 71.98 0.47 2.44 16 11 O -0.57 -13.63 13.06 -148.98 -1.95 -15.58 16 12 N -0.68 -19.67 5.56 -495.45 -2.75 -22.43 16 13 C 0.07 2.19 5.48 86.30 0.47 2.67 16 14 C -0.09 -3.65 5.41 30.59 0.17 -3.48 16 15 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 16 C -0.54 -31.96 9.66 25.60 0.25 -31.72 16 17 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 18 C 0.00 -0.01 5.47 84.66 0.46 0.46 16 19 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 20 Si 0.96 44.75 27.47 68.60 1.88 46.64 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 24 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 26 H 0.07 0.96 4.95 -2.38 -0.01 0.95 16 27 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 28 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.12 3.26 6.69 -2.91 -0.02 3.24 16 31 H 0.07 1.08 6.32 -2.38 -0.02 1.06 16 32 H 0.05 0.98 7.35 -2.39 -0.02 0.96 16 33 H 0.39 5.77 9.12 -74.06 -0.68 5.09 16 34 H 0.34 9.88 6.96 -89.70 -0.62 9.26 16 35 H 0.07 2.20 7.36 -2.39 -0.02 2.18 16 36 H 0.03 1.01 8.06 -2.39 -0.02 0.99 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 40 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 41 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -72.12 329.20 0.50 -71.62 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -0.33 Total: 22.36 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 3.34 Total: -41.60 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -2.45 Total: -83.45 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -1.95 Total: -15.58 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Total: -72.12 0.50 -71.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543840521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.302 kcal (2) G-P(sol) polarization free energy of solvation -72.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds