Wall clock time and date at job start Sun Mar 29 2020 23:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00254 * 2 1 4 4 H 1.48504 * 109.47262 * 270.00213 * 3 2 1 5 5 H 1.48491 * 109.47159 * 30.00302 * 3 2 1 6 6 H 1.48503 * 109.47128 * 150.00711 * 3 2 1 7 7 C 1.37884 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99643 * 171.90761 * 7 2 1 9 9 C 1.50701 * 120.00222 * 351.91281 * 7 2 1 10 10 C 1.52995 * 115.55388 * 84.81256 * 9 7 2 11 11 N 1.46508 * 109.46750 * 40.07646 * 10 9 7 12 12 C 1.34777 * 119.99825 * 186.14800 * 11 10 9 13 13 O 1.21280 * 120.00343 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99813 * 180.02562 * 12 11 10 15 15 H 1.08997 * 115.55476 * 34.33121 * 14 12 11 16 16 C 1.53007 * 117.49689 * 248.62283 * 14 12 11 17 17 C 1.53004 * 59.99964 * 252.51044 * 16 14 12 18 18 H 1.09002 * 117.51573 * 107.47861 * 17 16 14 19 19 C 1.52999 * 117.50023 * 252.51167 * 17 16 14 20 20 C 1.53782 * 113.61519 * 226.11959 * 19 17 16 21 21 C 1.53780 * 87.08259 * 220.01736 * 20 19 17 22 22 C 1.53780 * 113.61700 * 128.62104 * 19 17 16 23 23 C 1.52997 * 117.51528 * 230.51827 * 9 7 2 24 24 C 1.52998 * 60.00294 * 107.47798 * 23 9 7 25 25 H 0.97000 * 119.99749 * 5.02220 * 1 2 3 26 26 H 1.08995 * 109.47653 * 160.07820 * 10 9 7 27 27 H 1.09002 * 109.47374 * 280.08427 * 10 9 7 28 28 H 0.96996 * 120.00306 * 6.15299 * 11 10 9 29 29 H 1.08998 * 117.49850 * 359.97438 * 16 14 12 30 30 H 1.08999 * 117.49797 * 145.02602 * 16 14 12 31 31 H 1.08997 * 112.84793 * 357.42033 * 19 17 16 32 32 H 1.09004 * 113.61092 * 334.56673 * 20 19 17 33 33 H 1.09002 * 113.61718 * 105.46898 * 20 19 17 34 34 H 1.08997 * 113.61485 * 270.88251 * 21 20 19 35 35 H 1.08992 * 113.61663 * 139.97828 * 21 20 19 36 36 H 1.08998 * 113.61434 * 254.52782 * 22 19 17 37 37 H 1.08999 * 113.61397 * 25.43332 * 22 19 17 38 38 H 1.09000 * 117.49639 * 214.96964 * 23 9 7 39 39 H 1.09004 * 117.50006 * 359.97438 * 23 9 7 40 40 H 1.08998 * 117.49917 * 252.50875 * 24 23 9 41 41 H 1.08992 * 117.52036 * 107.47735 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1942 -0.0005 8 1 3.0764 -1.1987 -0.1322 9 6 1.2621 -2.4928 0.1825 10 6 0.6620 -3.0949 -1.0896 11 7 1.6028 -2.9270 -2.2001 12 6 1.2371 -3.2710 -3.4509 13 8 0.1291 -3.7191 -3.6572 14 6 2.2049 -3.0988 -4.5931 15 1 3.2541 -3.2655 -4.3495 16 6 1.8831 -2.0266 -5.6361 17 6 1.7302 -3.5075 -5.9890 18 1 0.7180 -3.9013 -6.0811 19 6 2.7647 -4.1185 -6.9362 20 6 2.1468 -4.9778 -8.0519 21 6 3.3134 -5.9563 -7.8365 22 6 3.4020 -5.4117 -6.4011 23 6 1.7850 -3.4623 1.2444 24 6 0.4891 -2.6866 1.4886 25 1 -0.4850 0.8368 -0.0735 26 1 0.4698 -4.1564 -0.9336 27 1 -0.2731 -2.5872 -1.3258 28 1 2.4888 -2.5683 -2.0352 29 1 0.9712 -1.4461 -5.4964 30 1 2.7208 -1.4877 -6.0788 31 1 3.4913 -3.3901 -7.2961 32 1 1.1736 -5.3951 -7.7932 33 1 2.1557 -4.4962 -9.0297 34 1 4.1901 -5.7309 -8.4438 35 1 3.0194 -7.0045 -7.8885 36 1 4.4242 -5.2804 -6.0462 37 1 2.7719 -5.9476 -5.6912 38 1 1.7016 -4.5290 1.0366 39 1 2.6664 -3.1610 1.8106 40 1 0.5177 -1.8750 2.2155 41 1 -0.4472 -3.2426 1.4414 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564088781.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:53 Heat of formation + Delta-G solvation = 1.288645 kcal Electronic energy + Delta-G solvation = -19747.645105 eV Core-core repulsion = 16821.453357 eV Total energy + Delta-G solvation = -2926.191748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08080 -39.69702 -38.48529 -36.49753 -34.87917 -34.00574 -28.69231 -27.50600 -26.81623 -26.41360 -24.31539 -22.95496 -21.99678 -21.39041 -20.62395 -20.20780 -18.38207 -17.90405 -16.86810 -16.57093 -16.33314 -16.16745 -15.82289 -15.58791 -14.72128 -14.55650 -14.20779 -13.77459 -13.51469 -13.39439 -13.27338 -13.23175 -12.92239 -12.83436 -12.65365 -12.34131 -12.03494 -11.85374 -11.55218 -11.47946 -11.33248 -10.96855 -10.83630 -10.79773 -10.60820 -10.44420 -10.11870 -9.71150 -8.10230 -6.23773 1.42283 1.45982 1.54083 1.62401 2.36125 2.44026 2.90426 3.18383 3.44726 3.65811 3.73809 3.82147 3.99231 4.02544 4.17138 4.21619 4.26462 4.32285 4.51094 4.55816 4.66527 4.71240 4.82305 4.91303 4.92837 4.95448 4.99041 5.03507 5.09158 5.15492 5.15936 5.24649 5.29862 5.42848 5.48179 5.60694 5.70340 5.73346 5.77109 6.36472 6.81460 6.86914 7.43439 7.46536 8.97367 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023323 B = 0.004657 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.247873 B = 6011.173860 C = 6612.061435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.030 3.970 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.067 0.933 9 C 0.004 3.996 10 C 0.177 3.823 11 N -0.688 5.688 12 C 0.525 3.475 13 O -0.606 6.606 14 C -0.186 4.186 15 H 0.146 0.854 16 C -0.143 4.143 17 C -0.102 4.102 18 H 0.090 0.910 19 C -0.078 4.078 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.179 4.179 24 C -0.163 4.163 25 H 0.258 0.742 26 H 0.038 0.962 27 H 0.025 0.975 28 H 0.411 0.589 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.402 -7.058 -13.061 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.172 4.172 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.542 4.542 8 H 0.085 0.915 9 C 0.004 3.996 10 C 0.052 3.948 11 N -0.336 5.336 12 C 0.313 3.687 13 O -0.489 6.489 14 C -0.207 4.207 15 H 0.163 0.837 16 C -0.180 4.180 17 C -0.121 4.121 18 H 0.108 0.892 19 C -0.096 4.096 20 C -0.173 4.173 21 C -0.173 4.173 22 C -0.176 4.176 23 C -0.216 4.216 24 C -0.202 4.202 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.248 0.752 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.478 -7.245 -13.085 17.193 hybrid contribution -0.100 1.254 0.681 1.430 sum 8.378 -5.992 -12.405 16.124 Atomic orbital electron populations 1.70123 1.07502 1.27276 1.49464 1.25692 0.95292 1.02059 0.94114 0.85698 0.78945 0.79692 0.78194 1.20154 1.21894 1.18690 1.20570 0.93421 0.89314 1.50898 0.91494 1.19118 0.99327 0.94799 0.86389 1.20547 0.91295 0.96145 0.86814 1.45794 1.18587 1.62874 1.06354 1.20396 0.87423 0.76657 0.84233 1.90596 1.24411 1.48831 1.85088 1.22226 0.99967 1.09527 0.88997 0.83657 1.23145 1.03777 0.91712 0.99402 1.22364 1.00080 0.96759 0.92881 0.89216 1.22254 0.96187 0.96132 0.95002 1.22956 0.98150 0.97469 0.98707 1.22812 0.98969 0.99113 0.96427 1.22920 1.01035 0.96480 0.97175 1.23086 0.97118 0.96307 1.05071 1.22428 0.94095 1.01446 1.02181 0.93325 0.94340 0.95632 0.75201 0.90536 0.84827 0.87097 0.91185 0.90296 0.88668 0.91400 0.90510 0.91720 0.89303 0.89485 0.91796 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.29 12.99 21.45 0.28 -51.01 16 2 C 0.03 1.55 5.38 84.66 0.46 2.01 16 3 Si 0.95 41.38 29.55 68.60 2.03 43.41 16 4 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.50 -25.25 7.52 25.60 0.19 -25.06 16 8 H 0.07 3.20 7.83 -2.91 -0.02 3.18 16 9 C 0.00 0.20 1.69 -52.93 -0.09 0.12 16 10 C 0.18 8.32 5.76 86.38 0.50 8.81 16 11 N -0.69 -28.52 5.28 -463.06 -2.44 -30.96 16 12 C 0.52 21.16 7.61 87.66 0.67 21.82 16 13 O -0.61 -29.27 16.24 -3.03 -0.05 -29.32 16 14 C -0.19 -5.42 5.71 -11.54 -0.07 -5.49 16 15 H 0.15 3.41 8.14 -2.39 -0.02 3.39 16 16 C -0.14 -3.69 9.92 30.60 0.30 -3.38 16 17 C -0.10 -2.63 5.06 -10.79 -0.05 -2.68 16 18 H 0.09 2.81 7.50 -2.39 -0.02 2.79 16 19 C -0.08 -1.44 3.88 -10.27 -0.04 -1.48 16 20 C -0.14 -2.30 7.63 31.12 0.24 -2.07 16 21 C -0.14 -2.02 8.08 31.12 0.25 -1.77 16 22 C -0.14 -2.51 7.45 31.12 0.23 -2.28 16 23 C -0.18 -7.19 9.88 30.59 0.30 -6.89 16 24 C -0.16 -7.51 9.53 30.59 0.29 -7.22 16 25 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 26 H 0.04 1.74 7.95 -2.39 -0.02 1.72 16 27 H 0.03 1.41 8.12 -2.39 -0.02 1.39 16 28 H 0.41 15.64 7.59 -92.71 -0.70 14.93 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.13 2.54 8.13 -2.39 -0.02 2.52 16 31 H 0.11 1.66 8.07 -2.39 -0.02 1.64 16 32 H 0.07 1.37 7.98 -2.39 -0.02 1.35 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 38 H 0.09 3.17 8.09 -2.39 -0.02 3.15 16 39 H 0.09 3.35 8.14 -2.39 -0.02 3.34 16 40 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -63.30 341.43 3.29 -60.01 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.30 Total: 33.42 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 3.18 Total: -25.56 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -2.16 Total: -81.97 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.05 Total: -29.32 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -63.30 3.29 -60.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564088781.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.300 kcal (2) G-P(sol) polarization free energy of solvation -63.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds