Wall clock time and date at job start Sun Mar 29 2020 23:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00288 * 2 1 4 4 H 1.48503 * 109.46984 * 240.00580 * 3 2 1 5 5 H 1.48497 * 109.47051 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47427 * 120.00581 * 3 2 1 7 7 C 1.37877 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00498 * 172.91664 * 7 2 1 9 9 C 1.50702 * 119.99757 * 352.91172 * 7 2 1 10 10 C 1.53000 * 115.55053 * 84.53978 * 9 7 2 11 11 N 1.46495 * 109.47432 * 39.67657 * 10 9 7 12 12 C 1.34774 * 120.00309 * 181.05036 * 11 10 9 13 13 O 1.21286 * 119.99842 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00016 * 180.02562 * 12 11 10 15 15 H 1.08998 * 115.57712 * 325.74506 * 14 12 11 16 16 C 1.53093 * 117.50914 * 111.49697 * 14 12 11 17 17 C 1.52556 * 117.50755 * 179.97438 * 14 12 11 18 18 C 1.53873 * 120.82643 * 2.74501 * 17 14 12 19 19 C 1.54982 * 104.06018 * 167.64276 * 18 17 14 20 20 C 1.54931 * 102.82013 * 322.42705 * 19 18 17 21 21 C 1.53476 * 121.08790 * 142.11188 * 17 14 12 22 22 C 1.53001 * 117.51595 * 230.23826 * 9 7 2 23 23 C 1.52998 * 60.00174 * 107.48274 * 22 9 7 24 24 H 0.97010 * 119.99919 * 5.02697 * 1 2 3 25 25 H 1.09001 * 109.46461 * 279.67964 * 10 9 7 26 26 H 1.09003 * 109.46914 * 159.68282 * 10 9 7 27 27 H 0.97004 * 120.00070 * 1.04723 * 11 10 9 28 28 H 1.09006 * 117.51415 * 0.02562 * 16 14 12 29 29 H 1.09004 * 117.51044 * 214.91233 * 16 14 12 30 30 H 1.08998 * 110.51084 * 48.99242 * 18 17 14 31 31 H 1.09001 * 110.51160 * 286.28695 * 18 17 14 32 32 H 1.09001 * 110.74362 * 204.09365 * 19 18 17 33 33 H 1.09004 * 110.74559 * 80.75886 * 19 18 17 34 34 H 1.09004 * 110.48151 * 156.41056 * 20 19 18 35 35 H 1.08997 * 110.47724 * 278.90941 * 20 19 18 36 36 H 1.09008 * 110.06950 * 96.68521 * 21 17 14 37 37 H 1.09003 * 110.11296 * 335.18736 * 21 17 14 38 38 H 1.09006 * 117.49757 * 214.96815 * 22 9 7 39 39 H 1.08997 * 117.50397 * 359.97438 * 22 9 7 40 40 H 1.09002 * 117.49431 * 252.50963 * 23 22 9 41 41 H 1.08993 * 117.50208 * 107.48432 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0783 -1.1976 -0.1159 9 6 1.2595 -2.4942 0.1599 10 6 0.6732 -3.0818 -1.1253 11 7 1.6220 -2.8937 -2.2255 12 6 1.3079 -3.3166 -3.4661 13 8 0.2398 -3.8534 -3.6714 14 6 2.2842 -3.1236 -4.5977 15 1 2.8858 -2.2159 -4.5505 16 6 2.9380 -4.3754 -5.1888 17 6 1.8706 -3.6243 -5.9782 18 6 0.4807 -4.2428 -6.2089 19 6 0.3508 -4.3121 -7.7517 20 6 1.0381 -3.0027 -8.2137 21 6 2.2302 -2.8386 -7.2466 22 6 1.7703 -3.4758 1.2166 23 6 0.4721 -2.7021 1.4552 24 1 -0.4850 0.8369 -0.0736 25 1 -0.2627 -2.5757 -1.3621 26 1 0.4853 -4.1464 -0.9854 27 1 2.4763 -2.4647 -2.0613 28 1 2.6615 -5.3384 -4.7594 29 1 3.9696 -4.2910 -5.5304 30 1 -0.2961 -3.6041 -5.7884 31 1 0.4307 -5.2420 -5.7761 32 1 -0.6974 -4.3241 -8.0507 33 1 0.8755 -5.1829 -8.1446 34 1 1.3906 -3.0988 -9.2407 35 1 0.3527 -2.1600 -8.1239 36 1 3.1354 -3.2473 -7.6958 37 1 2.3749 -1.7852 -7.0066 38 1 1.6886 -4.5402 0.9962 39 1 2.6456 -3.1815 1.7957 40 1 0.4933 -1.8986 2.1915 41 1 -0.4636 -3.2573 1.3917 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566745228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:54 Heat of formation + Delta-G solvation = -8.473337 kcal Electronic energy + Delta-G solvation = -20062.007202 eV Core-core repulsion = 17135.392143 eV Total energy + Delta-G solvation = -2926.615060 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.89068 -37.86582 -36.52782 -33.95191 -33.11682 -32.03087 -28.59789 -26.90474 -25.56005 -25.08828 -23.03220 -21.16278 -20.63283 -19.68351 -19.37138 -18.44933 -16.53938 -16.09955 -15.32181 -15.27419 -14.77183 -14.45788 -14.26903 -13.91360 -13.35075 -13.05446 -12.90681 -12.59800 -12.21471 -11.95724 -11.83575 -11.62194 -11.08158 -11.03543 -10.94610 -10.92385 -10.76089 -10.57200 -10.48125 -10.25195 -10.06331 -9.63677 -9.62895 -9.05973 -8.85317 -8.53204 -8.31246 -7.88918 -6.11738 -4.21260 3.12072 3.23136 3.30130 3.31228 3.89215 4.06355 4.31363 4.60492 4.74318 4.96108 5.01496 5.15724 5.22051 5.25607 5.35678 5.57866 5.61948 5.72107 5.78337 5.86379 5.86935 5.99222 6.04756 6.06018 6.15704 6.20898 6.29313 6.31494 6.48865 6.49714 6.56947 6.68139 6.72116 6.93495 7.08897 7.31851 7.39875 7.52630 7.76735 8.31432 8.49938 8.80473 9.06514 9.46115 10.95977 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021829 B = 0.005158 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.373195 B = 5427.397425 C = 6062.869274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.078 3.922 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.166 3.834 11 N -0.691 5.691 12 C 0.531 3.469 13 O -0.559 6.559 14 C -0.176 4.176 15 H 0.119 0.881 16 C -0.144 4.144 17 C -0.097 4.097 18 C -0.074 4.074 19 C -0.128 4.128 20 C -0.122 4.122 21 C -0.089 4.089 22 C -0.211 4.211 23 C -0.152 4.152 24 H 0.263 0.737 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.404 0.596 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 -5.917 -11.746 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.028 3.972 10 C 0.042 3.958 11 N -0.339 5.339 12 C 0.317 3.683 13 O -0.439 6.439 14 C -0.197 4.197 15 H 0.137 0.863 16 C -0.182 4.182 17 C -0.097 4.097 18 C -0.111 4.111 19 C -0.166 4.166 20 C -0.160 4.160 21 C -0.126 4.126 22 C -0.248 4.248 23 C -0.190 4.190 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.240 0.760 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.790 -6.149 -11.780 13.818 hybrid contribution 0.893 1.334 0.313 1.635 sum 4.683 -4.815 -11.466 13.289 Atomic orbital electron populations 1.69969 1.05960 1.27073 1.47521 1.24980 0.94748 0.98895 0.94115 0.86716 0.79694 0.83224 0.78703 1.20195 1.21270 1.20134 1.20251 0.92876 0.88615 1.52551 0.92171 1.19036 0.98237 0.93954 0.86013 1.20834 0.92111 0.96645 0.86216 1.45921 1.21604 1.58922 1.07477 1.19522 0.86752 0.78796 0.83274 1.90615 1.24684 1.44955 1.83627 1.22330 1.02822 1.00251 0.94291 0.86287 1.22981 0.97554 0.95181 1.02465 1.21704 0.96774 1.00794 0.90462 1.21837 0.94520 1.01044 0.93730 1.22573 1.00051 0.97231 0.96716 1.22329 0.97184 0.98274 0.98166 1.21661 0.98149 0.99547 0.93264 1.23080 0.98367 0.95637 1.07710 1.22493 0.92541 1.01184 1.02820 0.92745 0.91547 0.94707 0.75972 0.88459 0.88260 0.89788 0.91624 0.91804 0.91926 0.91969 0.91602 0.91557 0.91493 0.91633 0.90410 0.89941 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.97 12.97 55.43 0.72 -23.25 16 2 C 0.08 2.03 5.39 -17.82 -0.10 1.93 16 3 Si 0.89 20.21 29.55 -169.99 -5.02 15.19 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.51 -12.75 7.43 -34.44 -0.26 -13.00 16 8 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 9 C 0.03 0.67 1.71 -155.66 -0.27 0.40 16 10 C 0.17 3.80 5.75 -4.04 -0.02 3.77 16 11 N -0.69 -14.23 5.33 -60.30 -0.32 -14.55 16 12 C 0.53 10.41 7.61 -10.99 -0.08 10.33 16 13 O -0.56 -12.40 13.70 5.55 0.08 -12.32 16 14 C -0.18 -2.70 6.06 -91.95 -0.56 -3.25 16 15 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 16 C -0.14 -1.84 9.94 -26.92 -0.27 -2.11 16 17 C -0.10 -1.32 2.44 -154.28 -0.38 -1.70 16 18 C -0.07 -1.08 4.77 -25.23 -0.12 -1.20 16 19 C -0.13 -1.46 6.91 -24.67 -0.17 -1.63 16 20 C -0.12 -1.29 6.84 -24.99 -0.17 -1.46 16 21 C -0.09 -1.00 6.54 -25.76 -0.17 -1.17 16 22 C -0.21 -4.44 9.88 -26.73 -0.26 -4.70 16 23 C -0.15 -3.49 9.51 -26.73 -0.25 -3.75 16 24 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 25 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 26 H 0.03 0.77 7.95 -51.93 -0.41 0.36 16 27 H 0.40 7.95 7.45 -40.82 -0.30 7.65 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.45 6.97 -51.93 -0.36 1.09 16 31 H 0.07 1.01 8.00 -51.93 -0.42 0.59 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 39 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -28.16 334.10 -9.54 -37.71 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.96 Total: 9.73 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -3.07 Total: -17.55 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.40 Total: -37.79 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.16 -9.54 -37.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566745228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.236 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds