Wall clock time and date at job start Mon Mar 30 2020 00:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.53002 * 109.47152 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46789 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47053 * 179.97438 * 12 11 10 14 14 C 1.46901 * 111.00289 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47016 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99950 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99374 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99322 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00431 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46903 * 90.00248 * 19 17 15 21 21 H 1.48507 * 109.46727 * 210.00074 * 19 17 15 22 22 H 1.48492 * 109.47140 * 330.00014 * 19 17 15 23 23 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 24 24 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 25 25 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 26 26 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 28 28 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 30 30 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 31 31 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 32 32 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 33 33 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 34 34 H 1.08992 * 109.47010 * 300.00255 * 11 10 9 35 35 H 1.08995 * 109.46796 * 60.00374 * 11 10 9 36 36 H 1.08992 * 109.47647 * 299.99981 * 12 11 10 37 37 H 1.09000 * 109.47450 * 60.00422 * 12 11 10 38 38 H 1.00909 * 110.99691 * 56.05000 * 13 12 11 39 39 H 1.08998 * 109.46941 * 300.00430 * 14 13 12 40 40 H 1.09000 * 109.46536 * 60.00213 * 14 13 12 41 41 H 0.97004 * 119.99854 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4398 -4.2587 1.0547 12 6 0.0888 -4.8639 2.4154 13 7 -0.6369 -6.1258 2.2175 14 6 -0.9906 -6.7373 3.5055 15 6 -1.7315 -8.0269 3.2626 16 1 -1.9203 -8.3592 2.2525 17 6 -2.1682 -8.7825 4.3300 18 7 -2.8144 -9.9082 4.1180 19 14 -1.8410 -8.2080 6.0771 20 1 -2.9679 -7.3576 6.5377 21 1 -1.7136 -9.3876 6.9703 22 1 -0.5814 -7.4223 6.1121 23 1 -0.3633 0.0002 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6584 2.1313 -0.0004 27 1 4.1197 2.1327 0.0107 28 1 5.3552 0.0039 0.0106 29 1 4.5238 -2.8172 1.0286 30 1 3.7611 -3.2610 -0.5173 31 1 5.3001 -2.3666 -0.5085 32 1 2.1104 -3.1353 1.8209 33 1 0.5677 -2.2476 1.8171 34 1 -0.4755 -4.0678 0.4945 35 1 1.0676 -4.9550 0.4988 36 1 1.0043 -5.0549 2.9752 37 1 -0.5388 -4.1678 2.9718 38 1 -0.1020 -6.7651 1.6488 39 1 -0.0823 -6.9416 4.0722 40 1 -1.6251 -6.0540 4.0699 41 1 -3.1213 -10.4401 4.8690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568383687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:26 Heat of formation + Delta-G solvation = -51.313740 kcal Electronic energy + Delta-G solvation = -18989.006402 eV Core-core repulsion = 16060.533643 eV Total energy + Delta-G solvation = -2928.472759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19028 -38.56839 -37.43443 -34.88898 -34.52609 -33.17742 -31.82894 -29.36332 -27.90256 -27.55179 -25.51076 -23.10422 -22.63405 -22.42950 -21.83406 -19.03293 -18.57174 -17.67052 -16.90275 -16.61494 -16.33377 -16.07111 -15.46254 -15.27311 -14.97975 -14.59557 -14.28523 -14.16910 -14.07516 -13.88259 -13.84508 -13.58846 -13.14414 -12.86059 -12.72138 -12.52917 -12.42041 -12.38537 -12.21117 -11.92705 -11.83138 -11.78995 -11.50032 -10.82179 -10.77239 -9.54358 -9.46065 -9.19072 -8.31416 -6.36644 0.22541 0.36608 1.34846 1.36528 1.47541 2.33265 2.37848 2.89271 3.02436 3.55932 3.82166 3.87545 3.94508 4.09140 4.19866 4.23019 4.36839 4.38797 4.44291 4.50552 4.61945 4.64289 4.67748 4.72541 4.76658 4.77017 4.87069 4.91542 5.03513 5.11160 5.15637 5.25652 5.32245 5.50018 5.51724 5.51940 5.62173 5.87758 5.92871 6.52158 6.59116 6.64112 6.74148 7.28424 8.85407 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.035687 B = 0.002980 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.406237 B = 9393.690883 C = 9565.711944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.115 4.115 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.112 4.112 8 C 0.066 3.934 9 O -0.344 6.344 10 C 0.078 3.922 11 C -0.102 4.102 12 C 0.063 3.937 13 N -0.692 5.692 14 C 0.174 3.826 15 C -0.532 4.532 16 H 0.036 0.964 17 C 0.006 3.994 18 N -0.948 5.948 19 Si 0.954 3.046 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.250 1.250 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.146 0.854 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.338 0.662 39 H -0.010 1.010 40 H 0.026 0.974 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.716 25.361 -6.372 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.116 4.116 3 C -0.139 4.139 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.116 4.116 7 C -0.169 4.169 8 C 0.023 3.977 9 O -0.262 6.262 10 C 0.003 3.997 11 C -0.140 4.140 12 C -0.066 4.066 13 N -0.323 5.323 14 C 0.046 3.954 15 C -0.570 4.570 16 H 0.055 0.945 17 C -0.191 4.191 18 N -0.588 5.588 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.173 1.173 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.164 0.836 27 H 0.169 0.831 28 H 0.164 0.836 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.156 0.844 39 H 0.007 0.993 40 H 0.044 0.956 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.953 25.410 -6.511 30.194 hybrid contribution 0.543 -0.742 0.999 1.358 sum 15.497 24.667 -5.512 29.648 Atomic orbital electron populations 1.20731 0.90150 1.03069 1.02849 1.20509 0.97488 0.92845 1.00748 1.21253 0.94805 0.97337 1.00512 1.21519 0.94200 0.99026 0.98923 1.21255 1.01010 0.91135 1.00512 1.20504 0.92883 0.97443 1.00766 1.20720 0.99972 0.93504 1.02660 1.18684 0.90162 0.85236 1.03617 1.85966 1.74892 1.35366 1.29968 1.22592 0.98791 0.94337 0.83990 1.21314 1.00581 0.94948 0.97177 1.21827 0.96295 0.92104 0.96400 1.60347 1.47847 1.06610 1.17520 1.19763 0.94210 0.93138 0.88325 1.21355 1.36177 1.05598 0.93880 0.94520 1.25926 0.94229 0.94644 1.04317 1.70062 1.39974 1.15467 1.33282 0.85617 0.80034 0.78354 0.78316 1.18969 1.20545 1.17319 0.90816 0.92386 0.89858 0.83592 0.83053 0.83577 0.90948 0.92156 0.89779 0.92458 0.92397 0.91048 0.91186 0.95055 0.91139 0.84440 0.99285 0.95626 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.79 71.24 0.70 -1.35 16 2 C -0.12 -2.38 5.89 -19.77 -0.12 -2.50 16 3 C -0.12 -1.95 9.70 22.26 0.22 -1.73 16 4 C -0.12 -1.68 10.04 22.28 0.22 -1.46 16 5 C -0.12 -1.93 9.70 22.25 0.22 -1.71 16 6 C -0.12 -2.36 5.89 -19.77 -0.12 -2.47 16 7 C -0.11 -1.99 9.79 71.24 0.70 -1.30 16 8 C 0.07 1.56 5.67 22.51 0.13 1.69 16 9 O -0.34 -8.95 8.33 -92.39 -0.77 -9.72 16 10 C 0.08 1.85 5.69 71.98 0.41 2.26 16 11 C -0.10 -2.77 5.84 30.59 0.18 -2.59 16 12 C 0.06 2.00 5.69 86.30 0.49 2.49 16 13 N -0.69 -28.64 6.49 -517.93 -3.36 -32.00 16 14 C 0.17 8.42 4.51 85.56 0.39 8.80 16 15 C -0.53 -31.37 9.87 25.60 0.25 -31.12 16 16 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 17 C 0.01 0.37 5.47 84.65 0.46 0.84 16 18 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 19 Si 0.95 44.14 27.47 68.60 1.88 46.03 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.20 6.30 -2.39 -0.02 1.19 16 25 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 26 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 27 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 28 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.24 7.53 -2.38 -0.02 1.23 16 31 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.31 7.23 -2.39 -0.02 1.30 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.34 13.69 8.72 -89.69 -0.78 12.90 16 39 H -0.01 -0.49 7.20 -2.39 -0.02 -0.51 16 40 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 41 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -68.75 338.80 2.33 -66.42 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.16 Total: 18.93 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 4.13 Total: -30.14 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -3.06 Total: -91.52 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.77 Total: -9.72 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Total: -68.75 2.33 -66.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568383687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.105 kcal (2) G-P(sol) polarization free energy of solvation -68.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds