Wall clock time and date at job start Mon Mar 30 2020 00:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48495 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47168 * 299.99791 * 3 2 1 6 6 H 1.48502 * 109.47074 * 59.99663 * 3 2 1 7 7 C 1.37873 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00638 * 172.93112 * 7 2 1 9 9 C 1.50710 * 119.99823 * 352.92929 * 7 2 1 10 10 C 1.52998 * 115.54609 * 84.53269 * 9 7 2 11 11 N 1.46492 * 109.47467 * 39.67659 * 10 9 7 12 12 C 1.34782 * 120.00320 * 181.16133 * 11 10 9 13 13 O 1.21284 * 119.99781 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00165 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46836 * 180.02562 * 14 12 11 16 16 H 1.09006 * 109.35745 * 54.72839 * 15 14 12 17 17 C 1.50067 * 109.36225 * 295.00183 * 15 14 12 18 18 C 1.29442 * 124.07625 * 222.68428 * 17 15 14 19 19 C 1.50070 * 124.07778 * 0.44675 * 18 17 15 20 20 C 1.53030 * 110.14343 * 342.86949 * 19 18 17 21 21 C 1.52948 * 109.40888 * 174.08844 * 15 14 12 22 22 C 1.52998 * 117.51838 * 230.23209 * 9 7 2 23 23 C 1.52993 * 117.49895 * 298.86039 * 9 7 2 24 24 H 0.97003 * 120.00219 * 5.03288 * 1 2 3 25 25 H 1.09004 * 109.47037 * 279.67747 * 10 9 7 26 26 H 1.08998 * 109.46809 * 159.68375 * 10 9 7 27 27 H 0.97001 * 120.00262 * 1.17282 * 11 10 9 28 28 H 1.09004 * 109.46910 * 60.00517 * 14 12 11 29 29 H 1.09000 * 109.47586 * 300.00299 * 14 12 11 30 30 H 1.07998 * 117.95609 * 42.66085 * 17 15 14 31 31 H 1.08004 * 117.95868 * 180.47083 * 18 17 15 32 32 H 1.08993 * 109.35615 * 222.66163 * 19 18 17 33 33 H 1.08997 * 109.24325 * 103.00380 * 19 18 17 34 34 H 1.08997 * 109.63928 * 169.11971 * 20 19 18 35 35 H 1.08995 * 109.64200 * 289.53727 * 20 19 18 36 36 H 1.09002 * 109.43884 * 49.82446 * 21 15 14 37 37 H 1.08997 * 109.80730 * 289.21962 * 21 15 14 38 38 H 1.09005 * 117.49540 * 214.97529 * 22 9 7 39 39 H 1.08997 * 117.50085 * 359.97438 * 22 9 7 40 40 H 1.09005 * 117.49948 * 359.97410 * 23 9 7 41 41 H 1.08998 * 117.50193 * 144.99702 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0784 -1.1976 -0.1146 9 6 1.2596 -2.4941 0.1618 10 6 0.6736 -3.0825 -1.1232 11 7 1.6225 -2.8951 -2.2233 12 6 1.3077 -3.3168 -3.4642 13 8 0.2385 -3.8510 -3.6700 14 6 2.2842 -3.1245 -4.5958 15 6 1.6856 -3.6863 -5.8869 16 1 0.7125 -3.2278 -6.0634 17 6 1.5187 -5.1716 -5.7528 18 6 1.8109 -6.0213 -6.6846 19 6 2.3662 -5.6406 -8.0258 20 6 2.1379 -4.1501 -8.2869 21 6 2.6109 -3.3600 -7.0602 22 6 1.7703 -3.4750 1.2192 23 6 0.4721 -2.7011 1.4570 24 1 -0.4850 0.8368 -0.0737 25 1 -0.2624 -2.5767 -1.3606 26 1 0.4857 -4.1469 -0.9827 27 1 2.4776 -2.4676 -2.0588 28 1 3.2126 -3.6480 -4.3674 29 1 2.4884 -2.0613 -4.7229 30 1 1.1312 -5.5554 -4.8207 31 1 1.6441 -7.0694 -6.4845 32 1 1.8694 -6.2235 -8.8012 33 1 3.4355 -5.8511 -8.0447 34 1 2.7065 -3.8405 -9.1637 35 1 1.0768 -3.9659 -8.4545 36 1 3.6313 -3.6496 -6.8089 37 1 2.5724 -2.2921 -7.2751 38 1 1.6886 -4.5395 0.9993 39 1 2.6454 -3.1802 1.7982 40 1 0.4930 -1.8971 2.1927 41 1 -0.4637 -3.2565 1.3938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570265177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:05 Heat of formation + Delta-G solvation = -39.544775 kcal Electronic energy + Delta-G solvation = -19834.685218 eV Core-core repulsion = 16906.722800 eV Total energy + Delta-G solvation = -2927.962418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88628 -39.21765 -38.31723 -34.83660 -34.00645 -33.52715 -31.84107 -29.09950 -27.63094 -26.56932 -23.27476 -22.98726 -22.85600 -21.38125 -20.75331 -18.79283 -18.23310 -17.69889 -16.95377 -16.66721 -16.48498 -16.21308 -15.49342 -15.03691 -14.91138 -14.49010 -14.36720 -13.81820 -13.60416 -13.50936 -13.46135 -13.12494 -12.93784 -12.92527 -12.83453 -12.32598 -12.30080 -12.03156 -11.67894 -11.48759 -11.37499 -11.01306 -10.85633 -10.61600 -10.44678 -10.07795 -9.83613 -9.66529 -8.09766 -6.23926 1.42347 1.45923 1.47219 1.56192 1.84987 2.41937 2.55558 3.19367 3.46067 3.79229 3.85958 3.97645 4.11865 4.26400 4.33137 4.46202 4.51576 4.55727 4.56752 4.67760 4.72404 4.76200 4.85863 4.86765 4.95042 4.99146 5.08684 5.11599 5.13365 5.25177 5.25932 5.47108 5.49333 5.53345 5.60645 5.75456 5.78880 5.86502 6.13419 6.37585 6.83337 6.92304 7.46622 7.51193 8.98034 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.004616 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.976618 B = 6064.142651 C = 6799.569897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.030 3.970 3 Si 0.950 3.050 4 H -0.258 1.258 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.504 4.504 8 H 0.068 0.932 9 C 0.005 3.995 10 C 0.178 3.822 11 N -0.697 5.697 12 C 0.496 3.504 13 O -0.598 6.598 14 C -0.124 4.124 15 C -0.040 4.040 16 H 0.060 0.940 17 C -0.152 4.152 18 C -0.164 4.164 19 C -0.087 4.087 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.180 4.180 23 C -0.164 4.164 24 H 0.258 0.742 25 H 0.024 0.976 26 H 0.036 0.964 27 H 0.411 0.589 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.604 -6.882 -13.354 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.172 4.172 3 Si 0.776 3.224 4 H -0.181 1.181 5 H -0.212 1.212 6 H -0.216 1.216 7 C -0.541 4.541 8 H 0.086 0.914 9 C 0.005 3.995 10 C 0.053 3.947 11 N -0.347 5.347 12 C 0.284 3.716 13 O -0.480 6.480 14 C -0.163 4.163 15 C -0.059 4.059 16 H 0.078 0.922 17 C -0.170 4.170 18 C -0.182 4.182 19 C -0.124 4.124 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.217 4.217 23 C -0.202 4.202 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.248 0.752 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.711 -7.133 -13.399 17.025 hybrid contribution -0.184 1.121 0.786 1.381 sum 7.527 -6.012 -12.613 15.871 Atomic orbital electron populations 1.70131 1.07507 1.27248 1.49497 1.25695 0.95296 1.02052 0.94114 0.85635 0.79695 0.80000 0.77080 1.18131 1.21176 1.21563 1.20614 0.93270 0.89204 1.51047 0.91388 1.19142 0.99217 0.94715 0.86459 1.20472 0.91137 0.95955 0.87108 1.45960 1.21346 1.59603 1.07745 1.21436 0.88166 0.77439 0.84581 1.90611 1.26939 1.46079 1.84401 1.21726 0.98350 1.04596 0.91662 1.19769 0.99131 0.92999 0.93993 0.92210 1.22075 1.00547 0.95420 0.98995 1.22252 1.00750 0.98917 0.96275 1.20492 1.01484 0.96482 0.93955 1.21615 1.01304 0.94787 0.98055 1.21654 0.98977 1.00764 0.93431 1.23077 0.97227 0.96232 1.05213 1.22423 0.93906 1.01489 1.02386 0.93299 0.95782 0.94596 0.75213 0.86852 0.87092 0.90350 0.87986 0.90201 0.89606 0.89573 0.92891 0.90352 0.90500 0.89500 0.89524 0.91826 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.75 12.97 21.45 0.28 -50.47 16 2 C 0.03 1.53 5.39 84.65 0.46 1.99 16 3 Si 0.95 40.86 29.55 68.60 2.03 42.89 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.50 -24.91 7.44 25.60 0.19 -24.72 16 8 H 0.07 3.21 7.82 -2.91 -0.02 3.19 16 9 C 0.01 0.25 1.70 -52.93 -0.09 0.16 16 10 C 0.18 8.29 5.75 86.38 0.50 8.78 16 11 N -0.70 -28.02 5.33 -463.07 -2.47 -30.49 16 12 C 0.50 18.92 7.46 87.66 0.65 19.57 16 13 O -0.60 -27.40 14.29 -3.04 -0.04 -27.44 16 14 C -0.12 -3.33 5.13 29.85 0.15 -3.17 16 15 C -0.04 -1.06 2.10 -11.76 -0.02 -1.09 16 16 H 0.06 1.87 7.94 -2.38 -0.02 1.85 16 17 C -0.15 -4.31 8.42 27.04 0.23 -4.09 16 18 C -0.16 -3.76 9.80 27.04 0.27 -3.50 16 19 C -0.09 -1.47 6.12 29.66 0.18 -1.29 16 20 C -0.12 -2.02 6.00 30.74 0.18 -1.83 16 21 C -0.11 -2.07 5.32 30.71 0.16 -1.90 16 22 C -0.18 -7.29 9.88 30.59 0.30 -6.99 16 23 C -0.16 -7.54 9.51 30.59 0.29 -7.25 16 24 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 25 H 0.02 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.04 1.62 7.94 -2.39 -0.02 1.60 16 27 H 0.41 15.20 7.46 -92.71 -0.69 14.51 16 28 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 29 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.08 2.72 6.53 -2.91 -0.02 2.71 16 31 H 0.10 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 36 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 3.14 8.08 -2.38 -0.02 3.12 16 39 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.06 3.13 8.14 -2.38 -0.02 3.11 16 41 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -62.54 333.30 3.55 -58.99 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.30 Total: 31.83 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 3.45 Total: -25.32 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.19 Total: -80.95 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.04 Total: -27.44 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -62.54 3.55 -58.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570265177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.446 kcal (2) G-P(sol) polarization free energy of solvation -62.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds