Wall clock time and date at job start Mon Mar 30 2020 00:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47372 * 2 1 4 4 O 1.42904 * 109.47525 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46755 * 240.00057 * 2 1 3 6 6 N 1.46901 * 109.46735 * 60.00192 * 5 2 1 7 7 C 1.46898 * 110.99963 * 179.97438 * 6 5 2 8 8 C 1.50699 * 109.47400 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00018 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00110 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99834 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00010 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46964 * 60.00611 * 12 10 8 14 14 H 1.48498 * 109.47128 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47703 * 300.00230 * 12 10 8 16 16 C 1.53001 * 109.47353 * 120.00699 * 2 1 3 17 17 C 1.50706 * 109.46589 * 299.99458 * 16 2 1 18 18 C 1.38237 * 119.99744 * 90.00605 * 17 16 2 19 19 C 1.38235 * 119.99712 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00223 * 270.01815 * 17 16 2 23 23 H 1.09001 * 109.46999 * 299.99796 * 1 2 3 24 24 H 1.08998 * 109.47579 * 59.99747 * 1 2 3 25 25 H 1.09006 * 109.47235 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47428 * 300.00340 * 3 2 1 27 27 H 1.09001 * 109.46892 * 60.00139 * 3 2 1 28 28 H 0.96698 * 114.00307 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.46656 * 179.97438 * 5 2 1 30 30 H 1.08993 * 109.47518 * 300.00219 * 5 2 1 31 31 H 1.00900 * 111.00215 * 303.95133 * 6 5 2 32 32 H 1.09008 * 109.46972 * 300.00287 * 7 6 5 33 33 H 1.09007 * 109.47215 * 59.99774 * 7 6 5 34 34 H 0.97007 * 119.99843 * 179.97438 * 11 10 8 35 35 H 1.08998 * 109.47218 * 180.02562 * 16 2 1 36 36 H 1.08993 * 109.47154 * 59.99638 * 16 2 1 37 37 H 1.08005 * 120.00088 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 39 39 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 41 41 H 1.07998 * 119.99975 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 2.0399 -0.7213 -1.2493 6 7 1.5502 -0.0287 -2.4487 7 6 2.0215 -0.6944 -3.6704 8 6 1.5009 0.0430 -4.8771 9 1 0.8821 0.9189 -4.7493 10 6 1.8146 -0.4005 -6.1444 11 7 2.5677 -1.4673 -6.3000 12 14 1.1687 0.5131 -7.6402 13 1 1.6640 1.9129 -7.6172 14 1 1.6443 -0.1605 -8.8752 15 1 -0.3161 0.5130 -7.6174 16 6 2.0400 -0.7214 1.2491 17 6 1.5377 -0.0109 2.4797 18 6 0.3299 -0.3764 3.0441 19 6 -0.1311 0.2756 4.1725 20 6 0.6163 1.2923 4.7371 21 6 1.8217 1.6610 4.1699 22 6 2.2847 1.0062 3.0438 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 3.8624 2.3258 0.0002 29 1 3.1299 -0.7209 -1.2495 30 1 1.6766 -1.7489 -1.2494 31 1 0.5436 0.0415 -2.4401 32 1 3.1115 -0.6939 -3.6870 33 1 1.6584 -1.7220 -3.6874 34 1 2.7881 -1.7796 -7.1916 35 1 3.1300 -0.7210 1.2493 36 1 1.6767 -1.7490 1.2491 37 1 -0.2540 -1.1707 2.6029 38 1 -1.0749 -0.0096 4.6132 39 1 0.2562 1.8014 5.6189 40 1 2.4035 2.4582 4.6084 41 1 3.2280 1.2921 2.6025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572038069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:44 Heat of formation + Delta-G solvation = -40.658189 kcal Electronic energy + Delta-G solvation = -19935.583690 eV Core-core repulsion = 17007.572991 eV Total energy + Delta-G solvation = -2928.010699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85538 -37.80537 -35.33007 -34.01961 -32.29238 -30.96903 -30.67096 -27.03941 -26.77176 -25.69032 -24.02011 -22.49386 -21.68481 -20.90991 -18.54909 -17.00906 -16.64272 -16.40130 -15.34812 -15.27400 -15.13846 -14.76936 -14.43511 -13.74930 -13.47862 -13.39342 -12.95589 -12.80915 -12.63606 -12.27423 -12.14771 -11.93158 -11.55668 -11.32162 -11.24996 -10.96015 -10.88410 -10.70838 -10.55170 -10.35408 -10.15610 -9.81359 -9.52034 -9.11789 -8.91229 -8.62871 -8.43856 -7.18480 -5.99500 -4.01371 1.33450 1.36426 3.35008 3.38816 3.41805 3.74784 4.44614 4.53811 4.81196 4.83666 4.95156 5.07149 5.10732 5.18036 5.36102 5.40185 5.47018 5.51665 5.60501 5.74107 5.75623 5.86018 5.94492 5.99036 6.05489 6.19951 6.22068 6.32005 6.43473 6.44836 6.46575 6.49534 6.69008 6.76705 6.99237 7.34068 7.49269 7.82264 7.98585 8.18779 8.47213 8.68661 9.07922 9.63191 11.11621 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040791 B = 0.003737 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.257720 B = 7490.111242 C = 7608.540953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C 0.095 3.905 4 O -0.566 6.566 5 C 0.074 3.926 6 N -0.686 5.686 7 C 0.195 3.805 8 C -0.513 4.513 9 H 0.060 0.940 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.899 3.101 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.278 1.278 16 C -0.072 4.072 17 C -0.066 4.066 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.132 4.132 21 C -0.124 4.124 22 C -0.113 4.113 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.371 0.629 29 H 0.072 0.928 30 H 0.014 0.986 31 H 0.324 0.676 32 H 0.027 0.973 33 H -0.016 1.016 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.288 4.660 20.911 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.048 4.048 3 C 0.018 3.982 4 O -0.370 6.370 5 C -0.056 4.056 6 N -0.317 5.317 7 C 0.069 3.931 8 C -0.552 4.552 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.727 3.273 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.110 4.110 17 C -0.066 4.066 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.150 4.150 21 C -0.142 4.142 22 C -0.131 4.131 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.216 0.784 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.141 0.859 32 H 0.045 0.955 33 H 0.002 0.998 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.789 4.343 20.747 21.379 hybrid contribution -0.821 0.214 -0.877 1.220 sum -3.610 4.557 19.870 20.703 Atomic orbital electron populations 1.21928 0.94432 1.01959 1.02173 1.20514 0.95023 0.94898 0.94362 1.22101 0.80746 0.96078 0.99312 1.86446 1.20047 1.32846 1.97650 1.21833 1.00563 0.93692 0.89539 1.60676 1.14813 1.54198 1.02025 1.19514 0.96245 0.91845 0.85519 1.21157 1.31484 1.12197 0.90347 0.92143 1.24991 0.95336 0.95159 0.99118 1.69960 1.37363 1.23720 1.22732 0.86554 0.79101 0.79888 0.81787 1.20188 1.21372 1.20319 1.20661 1.01679 0.97999 0.90660 1.19943 0.94365 0.96131 0.96121 1.21109 0.96037 1.00346 0.96088 1.21104 0.99753 0.96795 0.96474 1.21080 0.95496 0.98148 1.00245 1.21138 0.96512 1.00012 0.96529 1.21186 1.00238 0.95936 0.95711 0.92463 0.91664 0.92490 0.92212 0.94838 0.78380 0.90939 0.96771 0.85858 0.95453 0.99836 0.92903 0.90057 0.91356 0.86216 0.86457 0.86603 0.86465 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 7.55 37.16 0.28 -1.68 16 2 C -0.05 -0.69 0.45 -154.51 -0.07 -0.76 16 3 C 0.10 1.36 5.16 37.15 0.19 1.55 16 4 O -0.57 -8.08 11.88 -35.23 -0.42 -8.50 16 5 C 0.07 1.36 4.50 -3.82 -0.02 1.35 16 6 N -0.69 -14.87 5.70 -115.05 -0.66 -15.53 16 7 C 0.20 5.26 5.44 -4.98 -0.03 5.23 16 8 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 9 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 12 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 C -0.07 -0.94 4.31 -27.88 -0.12 -1.06 16 17 C -0.07 -0.78 4.01 -104.62 -0.42 -1.20 16 18 C -0.12 -1.29 7.88 -39.58 -0.31 -1.60 16 19 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 20 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 21 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 22 C -0.11 -1.28 7.88 -39.58 -0.31 -1.59 16 23 H 0.06 0.70 6.17 -51.93 -0.32 0.38 16 24 H 0.06 0.92 6.57 -51.93 -0.34 0.58 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.96 7.60 -51.93 -0.39 0.57 16 27 H 0.03 0.44 6.17 -51.93 -0.32 0.12 16 28 H 0.37 3.81 9.12 45.56 0.42 4.23 16 29 H 0.07 1.46 7.68 -51.93 -0.40 1.06 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.32 6.69 6.76 -39.29 -0.27 6.42 16 32 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 33 H -0.02 -0.46 8.14 -51.93 -0.42 -0.88 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.08 1.12 7.62 -51.93 -0.40 0.73 16 36 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.12 1.19 8.03 -52.48 -0.42 0.77 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.13 1.39 7.59 -52.49 -0.40 0.99 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -31.62 328.11 -8.60 -40.22 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.77 Total: 6.81 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -2.42 Total: -18.28 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.08 Total: -42.11 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.42 Total: -8.50 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.62 -8.60 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572038069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.440 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds