Wall clock time and date at job start Sun Mar 29 2020 23:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99665 * 2 1 4 4 H 1.48505 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47199 * 299.99847 * 3 2 1 6 6 H 1.48500 * 109.47533 * 60.00152 * 3 2 1 7 7 C 1.37871 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00156 * 187.35206 * 7 2 1 9 9 C 1.50704 * 119.99904 * 7.34218 * 7 2 1 10 10 C 1.52994 * 115.55078 * 271.48682 * 9 7 2 11 11 N 1.46493 * 109.47332 * 278.98914 * 10 9 7 12 12 C 1.34781 * 119.99885 * 175.50010 * 11 10 9 13 13 O 1.21279 * 120.00285 * 4.92946 * 12 11 10 14 14 C 1.50700 * 120.00004 * 184.92552 * 12 11 10 15 15 C 1.55932 * 115.92217 * 298.11027 * 14 12 11 16 16 C 1.58476 * 103.90568 * 199.43051 * 15 14 12 17 17 C 1.55931 * 103.90651 * 359.97438 * 16 15 14 18 18 C 1.55930 * 104.49636 * 289.45646 * 17 16 15 19 19 C 1.54577 * 104.64442 * 71.08716 * 18 17 16 20 20 C 1.56955 * 101.40968 * 33.75191 * 17 16 15 21 21 C 1.52998 * 117.51147 * 57.19323 * 9 7 2 22 22 C 1.52996 * 117.49350 * 125.81759 * 9 7 2 23 23 H 0.96996 * 119.99820 * 4.99732 * 1 2 3 24 24 H 1.09005 * 109.47156 * 158.98913 * 10 9 7 25 25 H 1.09007 * 109.47064 * 38.99637 * 10 9 7 26 26 H 0.97000 * 120.00201 * 355.23127 * 11 10 9 27 27 H 1.09004 * 110.39853 * 318.76067 * 15 14 12 28 28 H 1.08997 * 110.39961 * 81.17659 * 15 14 12 29 29 H 1.09004 * 110.98338 * 241.33923 * 16 15 14 30 30 H 1.08993 * 110.62601 * 118.48642 * 16 15 14 31 31 H 1.09000 * 115.91844 * 160.57021 * 17 16 15 32 32 H 1.08999 * 110.40272 * 312.29276 * 18 17 16 33 33 H 1.09004 * 110.49539 * 189.92858 * 18 17 16 34 34 H 1.09002 * 110.40007 * 241.20930 * 19 18 17 35 35 H 1.08998 * 110.50449 * 118.84069 * 19 18 17 36 36 H 1.08999 * 112.02748 * 189.49822 * 20 17 16 37 37 H 1.08997 * 112.02545 * 62.97476 * 20 17 16 38 38 H 1.09008 * 117.49271 * 214.96740 * 21 9 7 39 39 H 1.08997 * 117.50535 * 359.97438 * 21 9 7 40 40 H 1.08999 * 117.50426 * 359.97438 * 22 9 7 41 41 H 1.09007 * 117.49855 * 144.97501 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0780 -1.1978 0.1192 9 6 1.2604 -2.4937 -0.1679 10 6 0.7509 -3.1336 1.1250 11 7 1.8444 -3.8617 1.7734 12 6 1.6520 -4.4327 2.9790 13 8 0.5507 -4.4213 3.4867 14 6 2.8055 -5.0856 3.6962 15 6 3.4627 -6.2978 2.9681 16 6 4.2351 -7.0619 4.1218 17 6 3.9438 -6.2107 5.3954 18 6 4.7554 -4.8967 5.1807 19 6 4.0019 -4.1514 4.0554 20 6 2.4875 -5.7032 5.1032 21 6 0.4035 -2.6607 -1.4244 22 6 1.7184 -3.4308 -1.2872 23 1 -0.4850 0.8368 -0.0732 24 1 -0.0591 -3.8253 0.8935 25 1 0.3842 -2.3561 1.7953 26 1 2.7056 -3.9361 1.3334 27 1 2.6979 -6.9312 2.5187 28 1 4.1639 -5.9506 2.2092 29 1 5.3062 -7.0911 3.9215 30 1 3.8441 -8.0722 4.2418 31 1 4.0959 -6.7143 6.3500 32 1 5.7742 -5.1260 4.8686 33 1 4.7634 -4.2997 6.0927 34 1 4.6504 -4.0144 3.1900 35 1 3.6378 -3.1882 4.4127 36 1 2.1671 -4.9463 5.8191 37 1 1.7741 -6.5246 5.0369 38 1 -0.5234 -3.2266 -1.3298 39 1 0.3775 -1.8304 -2.1300 40 1 2.5577 -3.1071 -1.9028 41 1 1.6571 -4.5033 -1.1024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582397290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:41 Heat of formation + Delta-G solvation = -24.979637 kcal Electronic energy + Delta-G solvation = -20432.160584 eV Core-core repulsion = 17504.829757 eV Total energy + Delta-G solvation = -2927.330826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.46526 -38.21359 -36.60749 -33.28110 -31.94586 -30.30418 -29.82193 -27.62726 -26.31151 -25.10827 -22.24854 -21.66813 -21.04021 -19.56865 -19.30930 -18.49394 -16.99654 -15.99021 -15.34586 -15.19361 -14.96409 -14.67248 -14.27275 -14.01319 -13.46079 -12.84572 -12.58591 -12.56081 -12.03092 -11.86663 -11.70397 -11.51859 -11.25134 -11.07097 -11.01541 -10.95386 -10.88027 -10.82768 -10.54091 -10.38009 -10.27292 -9.96331 -9.65403 -9.24227 -8.96335 -8.48342 -8.22541 -8.14293 -6.08962 -4.16493 3.14878 3.25282 3.34565 3.36832 3.84261 4.36321 4.36620 4.47726 4.54309 5.04470 5.12688 5.18139 5.19934 5.29718 5.36901 5.41050 5.41954 5.47110 5.72447 5.81066 5.89618 5.94632 6.01789 6.02640 6.07975 6.20684 6.22150 6.28968 6.31956 6.33611 6.43592 6.58285 6.65756 6.86876 7.07675 7.26925 7.43865 7.50896 7.81420 8.28873 8.34039 8.83741 8.89970 9.50548 10.99753 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.005346 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.725672 B = 5235.910138 C = 5669.438395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.496 4.496 8 H 0.060 0.940 9 C 0.026 3.974 10 C 0.162 3.838 11 N -0.705 5.705 12 C 0.533 3.467 13 O -0.552 6.552 14 C -0.101 4.101 15 C -0.108 4.108 16 C -0.117 4.117 17 C -0.109 4.109 18 C -0.118 4.118 19 C -0.108 4.108 20 C -0.093 4.093 21 C -0.145 4.145 22 C -0.211 4.211 23 H 0.261 0.739 24 H 0.037 0.963 25 H 0.073 0.927 26 H 0.397 0.603 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 -11.450 6.701 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.132 4.132 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.534 4.534 8 H 0.078 0.922 9 C 0.026 3.974 10 C 0.040 3.960 11 N -0.353 5.353 12 C 0.318 3.682 13 O -0.431 6.431 14 C -0.105 4.105 15 C -0.146 4.146 16 C -0.154 4.154 17 C -0.127 4.127 18 C -0.155 4.155 19 C -0.146 4.146 20 C -0.131 4.131 21 C -0.183 4.183 22 C -0.249 4.249 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.230 0.770 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.047 -11.262 7.102 15.558 hybrid contribution 0.753 1.038 -0.408 1.346 sum 8.800 -10.224 6.694 15.059 Atomic orbital electron populations 1.70040 1.05858 1.26869 1.48245 1.24972 0.94784 0.98957 0.94443 0.86614 0.80237 0.83976 0.77648 1.19724 1.20925 1.21025 1.20410 0.92928 0.88792 1.51276 0.92170 1.19076 0.98814 0.94166 0.85374 1.21120 0.86713 0.93239 0.94975 1.46055 1.16730 1.53506 1.18981 1.19678 0.88525 0.78565 0.81394 1.90654 1.25591 1.59840 1.67015 1.22952 0.94164 0.96547 0.96796 1.23223 0.98801 0.95458 0.97102 1.23241 0.99707 0.98195 0.94264 1.23569 0.95624 0.95867 0.97612 1.22611 0.98446 0.96050 0.98425 1.22576 0.95161 0.98067 0.98807 1.23291 0.95705 0.99797 0.94329 1.22475 0.91835 1.00774 1.03193 1.23004 0.99155 0.95682 1.07052 0.92945 0.94498 0.90851 0.76970 0.91447 0.91098 0.91512 0.91823 0.88445 0.91653 0.91797 0.91057 0.91252 0.90814 0.90961 0.91704 0.89760 0.90282 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.45 12.80 55.43 0.71 -23.74 16 2 C 0.07 1.93 5.36 -17.82 -0.10 1.84 16 3 Si 0.89 20.70 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.50 -12.92 8.84 -34.44 -0.30 -13.23 16 8 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 9 C 0.03 0.62 1.42 -155.66 -0.22 0.40 16 10 C 0.16 3.72 5.57 -4.05 -0.02 3.70 16 11 N -0.70 -13.56 5.51 -60.30 -0.33 -13.90 16 12 C 0.53 10.09 7.20 -10.98 -0.08 10.01 16 13 O -0.55 -12.60 16.52 5.56 0.09 -12.51 16 14 C -0.10 -1.44 1.27 -150.38 -0.19 -1.63 16 15 C -0.11 -1.26 6.07 -22.14 -0.13 -1.39 16 16 C -0.12 -1.11 6.41 -22.14 -0.14 -1.25 16 17 C -0.11 -1.08 5.14 -85.35 -0.44 -1.52 16 18 C -0.12 -1.20 6.21 -24.34 -0.15 -1.35 16 19 C -0.11 -1.37 5.86 -24.31 -0.14 -1.52 16 20 C -0.09 -1.21 5.68 -22.47 -0.13 -1.34 16 21 C -0.14 -3.30 9.21 -26.73 -0.25 -3.55 16 22 C -0.21 -4.33 9.81 -26.73 -0.26 -4.59 16 23 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 24 H 0.04 0.85 7.94 -51.93 -0.41 0.44 16 25 H 0.07 1.94 8.12 -51.92 -0.42 1.52 16 26 H 0.40 6.87 8.39 -40.82 -0.34 6.52 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.76 7.80 -51.93 -0.41 0.36 16 29 H 0.07 0.56 7.82 -51.93 -0.41 0.16 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.59 7.81 -51.93 -0.41 0.18 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.85 7.80 -51.93 -0.41 0.45 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.41 8.08 -51.92 -0.42 0.99 16 39 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -29.29 331.06 -9.11 -38.41 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.99 Total: 6.50 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.56 Total: -15.42 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.38 Total: -37.64 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.29 -9.11 -38.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582397290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.426 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds